Rroxscaffold_7G00186220

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013130
Physical Location & Seq
Forward (+)
25598351 .. 25598836
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00186220.1

Sequence Viewer

Length: 486 bp
ATGGCGATGGCCTCTCTTCGCTCCCAAATCCACCGCCTCCCTTCCCTCTCCAAGTCCCTAATCTCCAGATCCTCCGCCACCGCCACCGCCGCCGCCCCAGCCTCCTCCACCTCCTCCTCCAGGAAAGTCTCCGACCGCATCGTCAAGCTCTTCGCAATCGACGTCGACGGCCGGAAGCGCGAGATAGTGGGGCTCTCCGGCCAAACCCTCCTGAAAGCCCTAGCCAACAGCGGCCTGATCGAGCCGGCCTCCCACCGCCTCGAAGACATCGACGCCTGCTCCTCCGAGTGCGAGGTCAACATCGCTCAGGAGTGGTTCGATAAGCTGCCGCCGCGGACCTACGACGAGGAGTACTTGCTCAAGAAGTACGCTAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGATCGTCCTCACCAATGAGCTCCAAGGTATGGTGGTTGCGATCCCCGAGCCCAAACCCTGGGACATTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.7

Weight (kDa)

9.07

Isoelectric Point (pI)

57.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 2 cut(s) 442, 471
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 180, 334
AclWI GGATC 2 cut(s) 63, 448
AcoI YGGCCR 2 cut(s) 169, 199
AcyI GRCGYC 2 cut(s) 162, 273
AfaI GTAC 2 cut(s) 353, 368
AfiI CCNNNNNNNGG 3 cut(s) 120, 442, 471
AjnI CCWGG 3 cut(s) 119, 398, 470
AluBI AGCT 3 cut(s) 148, 325, 433
AluI AGCT 3 cut(s) 148, 325, 433
Alw21I GWGCWC 1 cut(s) 435
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 2 cut(s) 63, 448
Ama87I CYCGRG 1 cut(s) 458
AoxI GGCC 5 cut(s) 9, 169, 199, 232, 246
ApeKI GCWGC 1 cut(s) 325
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 1 cut(s) 415
AvaI CYCGRG 1 cut(s) 458
AvaII GGWCC 1 cut(s) 336
BanII GRGCYC 3 cut(s) 195, 435, 465
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 435
BbvI GCAGC 1 cut(s) 312
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 3 cut(s) 121, 400, 472
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 3 cut(s) 221, 372, 378
BisI GCNGC 6 cut(s) 90, 93, 232, 326, 329, 332
BlsI GCNGC 6 cut(s) 91, 94, 233, 327, 330, 333
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 3 cut(s) 121, 400, 472
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 458
BmgT120I GGNCC 1 cut(s) 336
BmrFI CCNGG 3 cut(s) 121, 400, 472
BmsI GCATC 2 cut(s) 147, 398
BpiI GAAGAC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BpmI CTGGAG 3 cut(s) 49, 103, 382
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 344
BsaHI GRCGYC 2 cut(s) 162, 273
BsaJI CCNNGG 4 cut(s) 332, 436, 470, 471
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 380, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 442, 471
Bse118I RCCGGY 1 cut(s) 244
BseBI CCWGG 3 cut(s) 121, 400, 472
BseDI CCNNGG 4 cut(s) 332, 436, 470, 471
BseGI GGATG 1 cut(s) 413
BseLI CCNNNNNNNGG 3 cut(s) 120, 442, 471
BseMII CTCAG 1 cut(s) 320
BseRI GAGGAG 5 cut(s) 94, 103, 106, 271, 362
BseX3I CGGCCG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 312
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 180, 334
Bsh1285I CGRYCG 2 cut(s) 136, 172
BshFI GGCC 5 cut(s) 11, 171, 201, 234, 248
BsiEI CGRYCG 2 cut(s) 136, 172
BsiHKAI GWGCWC 1 cut(s) 435
BsiHKCI CYCGRG 1 cut(s) 458
BsiSI CCGG 3 cut(s) 172, 198, 245
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 3 cut(s) 120, 442, 471
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 11, 171, 201, 234, 248
BsoBI CYCGRG 1 cut(s) 458
Bsp1286I GDGCHC 3 cut(s) 195, 435, 465
Bsp143I GATC 4 cut(s) 68, 237, 414, 453
BspANI GGCC 5 cut(s) 11, 171, 201, 234, 248
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 2 cut(s) 180, 334
BspPI GGATC 2 cut(s) 63, 448
BspQI GCTCTTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 244
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 4 cut(s) 332, 436, 470, 471
BssMI GATC 4 cut(s) 68, 237, 414, 453
BssNI GRCGYC 2 cut(s) 162, 273
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 3 cut(s) 121, 400, 472
Bst6I CTCTTC 2 cut(s) 21, 155
BstACI GRCGYC 2 cut(s) 162, 273
BstC8I GCNNGC 2 cut(s) 246, 277
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 332
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 413
BstFNI CGCG 2 cut(s) 180, 334
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 4 cut(s) 71, 240, 417, 456
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 4 cut(s) 68, 237, 414, 453
BstMCI CGRYCG 2 cut(s) 136, 172
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 177, 331, 400
BstNI CCWGG 3 cut(s) 121, 400, 472
BstSCI CCNGG 3 cut(s) 119, 398, 470
BstUI CGCG 2 cut(s) 180, 334
BstV1I GCAGC 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 169
BsuRI GGCC 5 cut(s) 11, 171, 201, 234, 248
BtgI CCRYGG 1 cut(s) 332
BtgZI GCGATG 2 cut(s) 20, 286
BtsCI GGATG 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 246, 277
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 336
Cfr42I CCGCGG 1 cut(s) 335
CseI GACGC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 352, 367
CviQI GTAC 2 cut(s) 352, 367
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 70, 239, 416, 455
DpnII GATC 4 cut(s) 68, 237, 414, 453
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 2 cut(s) 169, 199
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 21, 155
EarI CTCTTC 2 cut(s) 21, 155
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 3 cut(s) 195, 435, 465
Eco47I GGWCC 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 433
Eco88I CYCGRG 1 cut(s) 458
EcoICRI GAGCTC 1 cut(s) 433
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoRII CCWGG 3 cut(s) 119, 398, 470
EcoT14I CCWWGG 1 cut(s) 436
EcoT38I GRGCYC 3 cut(s) 195, 435, 465
ErhI CCWWGG 1 cut(s) 436
FaiI YATR 1 cut(s) 443
FaqI GGGAC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 6 cut(s) 90, 93, 232, 326, 329, 332
FokI GGATG 1 cut(s) 420
FriOI GRGCYC 3 cut(s) 195, 435, 465
Fsp4HI GCNGC 6 cut(s) 90, 93, 232, 326, 329, 332
FspBI CTAG 3 cut(s) 221, 372, 378
GlaI GCGC 1 cut(s) 179
GluI GCNGC 6 cut(s) 90, 93, 232, 326, 329, 332
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 3 cut(s) 49, 103, 382
HaeIII GGCC 5 cut(s) 11, 171, 201, 234, 248
HapII CCGG 3 cut(s) 172, 198, 245
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 2 cut(s) 162, 273
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 2 cut(s) 166, 298
HindII GTYRAC 2 cut(s) 166, 298
HpaII CCGG 3 cut(s) 172, 198, 245
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 2 cut(s) 166, 298
Hpy188I TCNGA 3 cut(s) 133, 286, 407
Hpy188III TCNNGA 4 cut(s) 66, 211, 308, 361
Hpy8I GTNNAC 2 cut(s) 166, 298
Hpy99I CGWCG 5 cut(s) 164, 167, 170, 275, 347
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 177, 331, 400
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 2 cut(s) 162, 273
HspAI GCGC 1 cut(s) 178
KroI GCCGGC 1 cut(s) 244
KroNI GCCGGC 1 cut(s) 246
KspI CCGCGG 1 cut(s) 335
Kzo9I GATC 4 cut(s) 68, 237, 414, 453
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 26, 284, 438
Lsp1109I GCAGC 1 cut(s) 312
LweI GCATC 2 cut(s) 147, 398
MaeI CTAG 3 cut(s) 221, 372, 378
MaeII ACGT 1 cut(s) 162
MalI GATC 4 cut(s) 70, 239, 416, 455
MboI GATC 4 cut(s) 68, 237, 414, 453
MboII GAAGA 3 cut(s) 8, 142, 275
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 3 cut(s) 195, 435, 465
MmeI TCCRAC 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 244
MspA1I CMGCKG 2 cut(s) 231, 334
MspI CCGG 3 cut(s) 172, 198, 245
MspR9I CCNGG 3 cut(s) 121, 400, 472
MvaI CCWGG 3 cut(s) 121, 400, 472
MvnI CGCG 2 cut(s) 180, 334
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 177, 331, 400
NaeI GCCGGC 1 cut(s) 246
NdeII GATC 4 cut(s) 68, 237, 414, 453
NgoMIV GCCGGC 1 cut(s) 244
PasI CCCWGGG 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 267
PdiI GCCGGC 1 cut(s) 246
PflMI CCANNNNNTGG 2 cut(s) 442, 471
PfoI TCCNGGA 1 cut(s) 119
PkrI GCNGC 6 cut(s) 91, 94, 233, 327, 330, 333
Psp124BI GAGCTC 1 cut(s) 435
Psp6I CCWGG 3 cut(s) 119, 398, 470
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 3 cut(s) 119, 398, 470
PspPI GGNCC 1 cut(s) 336
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 2 cut(s) 353, 368
RsaNI GTAC 2 cut(s) 352, 367
SacI GAGCTC 1 cut(s) 435
SacII CCGCGG 1 cut(s) 335
SalI GTCGAC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 155
SatI GCNGC 6 cut(s) 90, 93, 232, 326, 329, 332
Sau3AI GATC 4 cut(s) 68, 237, 414, 453
Sau96I GGNCC 1 cut(s) 336
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 3 cut(s) 121, 400, 472
SduI GDGCHC 3 cut(s) 195, 435, 465
SetI ASST 8 cut(s) 113, 150, 165, 297, 327, 341, 435, 442
SfaNI GCATC 2 cut(s) 147, 398
Sfr303I CCGCGG 1 cut(s) 335
SgrBI CCGCGG 1 cut(s) 335
SgrDI CGTCGACG 1 cut(s) 164
SinI GGWCC 1 cut(s) 336
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SspMI CTAG 3 cut(s) 221, 372, 378
SstI GAGCTC 1 cut(s) 435
StyD4I CCNGG 3 cut(s) 119, 398, 470
StyI CCWWGG 1 cut(s) 436
TaiI ACGT 1 cut(s) 165
TaqI TCGA 6 cut(s) 159, 165, 240, 261, 270, 318
TatI WGTACW 1 cut(s) 351
TauI GCSGC 5 cut(s) 92, 95, 234, 331, 334
TseI GCWGC 1 cut(s) 325
TspGWI ACGGA 1 cut(s) 471
Van91I CCANNNNNTGG 2 cut(s) 442, 471
VpaK11BI GGWCC 1 cut(s) 336
XagI CCTNNNNNAGG 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 3 cut(s) 221, 372, 378
ZraI GACGTC 1 cut(s) 163
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.