MD10G1150500.v1.1

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013130
Physical Location & Seq
Reverse (-)
23731364 .. 23732089
726 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1150500.v1.1.491

Sequence Viewer

Length: 468 bp
ATGGCGATGGCGAGCCTTCAGAGACTCCGTCACTCCCAAATCCTCCACCGCCTCCCTTCCCTCTCCCTCATCTCCAGATCCTCCGCCTCCTCCACCCACTCCGCCAAAGTCTCCGACCGAATCGTCAAGCTCTTCGCGATCGACGTCGACGGCCGCAAGCTGGAGGTCGTGGGCCTATCGGGCCACACTCTCCTCAAGGCCCTGGCCCAGGGCGGCCTTATCGAACCGGCCTCCCACCGGCTCGAGGACATCGACGCCTGCTCCGCCGAGTGCGAAGTCAACATCGCTCAGGAATGGTTCGACAAGCTCCCGCCGCGGTCCTACGACGAGGAGTACGTGCTGAAGAGGAACTCGAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGGTCGTCCTCACTCCGGAGCTTCAAGGTATGGTGGTTGCTGTCCCTGAGGCCAAACCCTGGGACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.17

Weight (kDa)

8.51

Isoelectric Point (pI)

56.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AatII GACGTC 1 cut(s) 147
AccB7I CCANNNNNTGG 1 cut(s) 453
AccI GTMKAC 1 cut(s) 147
AccII CGCG 2 cut(s) 137, 316
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 9 cut(s) 49, 84, 102, 154, 213, 264, 311, 314, 316
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 2 cut(s) 144, 255
AfaI GTAC 1 cut(s) 335
AfiI CCNNNNNNNGG 6 cut(s) 160, 208, 237, 244, 409, 453
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 5 cut(s) 201, 207, 380, 393, 452
AluBI AGCT 4 cut(s) 130, 160, 307, 415
AluI AGCT 4 cut(s) 130, 160, 307, 415
Alw26I GTCTC 2 cut(s) 16, 115
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 2 cut(s) 242, 352
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 8 cut(s) 151, 172, 181, 198, 204, 214, 228, 444
AspS9I GGNCC 5 cut(s) 172, 181, 199, 205, 318
AvaI CYCGRG 2 cut(s) 242, 352
AvaII GGWCC 1 cut(s) 318
AxyI CCTNAGG 1 cut(s) 441
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 5 cut(s) 203, 209, 382, 395, 454
BcoDI GTCTC 2 cut(s) 16, 115
BfaI CTAG 1 cut(s) 360
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 3 cut(s) 154, 214, 314
BlsI GCNGC 3 cut(s) 155, 215, 315
Bme1390I CCNGG 5 cut(s) 203, 209, 382, 395, 454
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 2 cut(s) 242, 352
BmgT120I GGNCC 5 cut(s) 172, 181, 199, 205, 318
BmrFI CCNGG 5 cut(s) 203, 209, 382, 395, 454
BmsI GCATC 1 cut(s) 380
BpmI CTGGAG 3 cut(s) 58, 182, 364
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 337
BsaHI GRCGYC 2 cut(s) 144, 255
BsaJI CCNNGG 6 cut(s) 201, 207, 208, 314, 452, 453
BsaWI WCCGGW 1 cut(s) 409
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 362, 392
Bsc4I CCNNNNNNNGG 6 cut(s) 160, 208, 237, 244, 409, 453
Bse118I RCCGGY 2 cut(s) 226, 237
Bse21I CCTNAGG 1 cut(s) 441
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 5 cut(s) 203, 209, 382, 395, 454
BseDI CCNNGG 6 cut(s) 201, 207, 208, 314, 452, 453
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 6 cut(s) 160, 208, 237, 244, 409, 453
BseMII CTCAG 2 cut(s) 302, 432
BseRI GAGGAG 3 cut(s) 79, 182, 344
BseX3I CGGCCG 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 137, 316
Bsh1285I CGRYCG 3 cut(s) 118, 141, 154
BshFI GGCC 8 cut(s) 153, 174, 183, 200, 206, 216, 230, 446
BsiEI CGRYCG 3 cut(s) 118, 141, 154
BsiHKCI CYCGRG 2 cut(s) 242, 352
BsiSI CCGG 3 cut(s) 227, 238, 410
BslFI GGGAC 1 cut(s) 422
BslI CCNNNNNNNGG 6 cut(s) 160, 208, 237, 244, 409, 453
BsmAI GTCTC 2 cut(s) 16, 115
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 8 cut(s) 153, 174, 183, 200, 206, 216, 230, 446
BsoBI CYCGRG 2 cut(s) 242, 352
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 2 cut(s) 77, 138
Bsp68I TCGCGA 1 cut(s) 137
BspACI CCGC 9 cut(s) 49, 84, 102, 154, 213, 264, 311, 314, 316
BspANI GGCC 8 cut(s) 153, 174, 183, 200, 206, 216, 230, 446
BspCNI CTCAG 2 cut(s) 301, 433
BspEI TCCGGA 1 cut(s) 409
BspFNI CGCG 2 cut(s) 137, 316
BspPI GGATC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 226, 237
BssAI RCCGGY 2 cut(s) 226, 237
BssECI CCNNGG 6 cut(s) 201, 207, 208, 314, 452, 453
BssMI GATC 2 cut(s) 77, 138
BssNI GRCGYC 2 cut(s) 144, 255
Bst2UI CCWGG 5 cut(s) 203, 209, 382, 395, 454
Bst6I CTCTTC 2 cut(s) 137, 338
BstACI GRCGYC 2 cut(s) 144, 255
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 3 cut(s) 13, 158, 259
BstDEI CTNAG 2 cut(s) 288, 441
BstDSI CCRYGG 1 cut(s) 314
BstENI CCTNNNNNAGG 1 cut(s) 206
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 2 cut(s) 137, 316
BstKTI GATC 2 cut(s) 80, 141
BstMAI GTCTC 2 cut(s) 16, 115
BstMBI GATC 2 cut(s) 77, 138
BstMCI CGRYCG 3 cut(s) 118, 141, 154
BstMWI GCNNNNNNNGC 4 cut(s) 180, 263, 313, 382
BstNI CCWGG 5 cut(s) 203, 209, 382, 395, 454
BstSCI CCNGG 5 cut(s) 201, 207, 380, 393, 452
BstUI CGCG 2 cut(s) 137, 316
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 151
Bsu36I CCTNAGG 1 cut(s) 441
BsuRI GGCC 8 cut(s) 153, 174, 183, 200, 206, 216, 230, 446
BtgI CCRYGG 1 cut(s) 314
BtgZI GCGATG 2 cut(s) 20, 268
BtsCI GGATG 1 cut(s) 395
BtuMI TCGCGA 1 cut(s) 137
Cac8I GCNNGC 3 cut(s) 13, 158, 259
Cfr10I RCCGGY 2 cut(s) 226, 237
Cfr13I GGNCC 5 cut(s) 172, 181, 199, 205, 318
Cfr42I CCGCGG 1 cut(s) 317
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 334
CviQI GTAC 1 cut(s) 334
DdeI CTNAG 2 cut(s) 288, 441
DpnI GATC 2 cut(s) 79, 140
DpnII GATC 2 cut(s) 77, 138
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 137, 338
EarI CTCTTC 2 cut(s) 137, 338
EciI GGCGGA 3 cut(s) 73, 91, 253
EclXI CGGCCG 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 318
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 441
Eco88I CYCGRG 2 cut(s) 242, 352
EcoNI CCTNNNNNAGG 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 199
EcoRII CCWGG 5 cut(s) 201, 207, 380, 393, 452
FaiI YATR 2 cut(s) 425, 466
FaqI GGGAC 1 cut(s) 422
FauI CCCGC 1 cut(s) 318
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 3 cut(s) 154, 214, 314
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 3 cut(s) 154, 214, 314
FspBI CTAG 1 cut(s) 360
GluI GCNGC 3 cut(s) 154, 214, 314
GsuI CTGGAG 3 cut(s) 58, 182, 364
HaeIII GGCC 8 cut(s) 153, 174, 183, 200, 206, 216, 230, 446
HapII CCGG 3 cut(s) 227, 238, 410
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 2 cut(s) 144, 255
HincII GTYRAC 2 cut(s) 148, 280
HindII GTYRAC 2 cut(s) 148, 280
HinfI GANTC 2 cut(s) 24, 120
HpaII CCGG 3 cut(s) 227, 238, 410
Hpy166II GTNNAC 2 cut(s) 148, 280
Hpy188I TCNGA 3 cut(s) 21, 115, 389
Hpy188III TCNNGA 4 cut(s) 75, 136, 290, 410
Hpy8I GTNNAC 2 cut(s) 148, 280
Hpy99I CGWCG 5 cut(s) 146, 149, 152, 257, 329
HpyAV CCTTC 2 cut(s) 26, 66
HpyCH4IV ACGT 2 cut(s) 144, 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 263, 313, 382
HpyF3I CTNAG 2 cut(s) 288, 441
HpySE526I ACGT 2 cut(s) 144, 336
Hsp92I GRCGYC 2 cut(s) 144, 255
Kpn2I TCCGGA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 317
Kzo9I GATC 2 cut(s) 77, 138
LguI GCTCTTC 1 cut(s) 137
LmnI GCTCC 3 cut(s) 266, 312, 412
LweI GCATC 1 cut(s) 380
MaeI CTAG 1 cut(s) 360
MaeII ACGT 2 cut(s) 144, 336
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 79, 140
MboI GATC 2 cut(s) 77, 138
MboII GAAGA 2 cut(s) 124, 355
MflI RGATCY 1 cut(s) 77
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 138
MroI TCCGGA 1 cut(s) 409
MspA1I CMGCKG 1 cut(s) 316
MspI CCGG 3 cut(s) 227, 238, 410
MspR9I CCNGG 5 cut(s) 203, 209, 382, 395, 454
MvaI CCWGG 5 cut(s) 203, 209, 382, 395, 454
MvnI CGCG 2 cut(s) 137, 316
MwoI GCNNNNNNNGC 4 cut(s) 180, 263, 313, 382
NdeII GATC 2 cut(s) 77, 138
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 29
NruI TCGCGA 1 cut(s) 137
PaeR7I CTCGAG 2 cut(s) 242, 352
PasI CCCWGGG 2 cut(s) 208, 453
PciSI GCTCTTC 1 cut(s) 137
PcsI WCGNNNNNNNCGW 3 cut(s) 141, 249, 333
PfeI GAWTC 1 cut(s) 120
PflFI GACNNNGTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 453
PkrI GCNGC 3 cut(s) 155, 215, 315
Ple19I CGATCG 1 cut(s) 141
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 337
Psp6I CCWGG 5 cut(s) 201, 207, 380, 393, 452
PspGI CCWGG 5 cut(s) 201, 207, 380, 393, 452
PspPI GGNCC 5 cut(s) 172, 181, 199, 205, 318
PspXI VCTCGAGB 2 cut(s) 242, 352
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 27
PvuI CGATCG 1 cut(s) 141
RruI TCGCGA 1 cut(s) 137
RsaI GTAC 1 cut(s) 335
RsaNI GTAC 1 cut(s) 334
SacII CCGCGG 1 cut(s) 317
SalI GTCGAC 1 cut(s) 146
SapI GCTCTTC 1 cut(s) 137
SatI GCNGC 3 cut(s) 154, 214, 314
Sau3AI GATC 2 cut(s) 77, 138
Sau96I GGNCC 5 cut(s) 172, 181, 199, 205, 318
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 5 cut(s) 203, 209, 382, 395, 454
SetI ASST 9 cut(s) 132, 147, 162, 168, 309, 339, 399, 417, 424
SfaNI GCATC 1 cut(s) 380
SfiI GGCCNNNNNGGCC 1 cut(s) 180
Sfr274I CTCGAG 2 cut(s) 242, 352
Sfr303I CCGCGG 1 cut(s) 317
SgrBI CCGCGG 1 cut(s) 317
SgrDI CGTCGACG 1 cut(s) 146
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 2 cut(s) 242, 352
SmlI CTYRAG 3 cut(s) 194, 242, 352
SmoI CTYRAG 3 cut(s) 194, 242, 352
SsiI CCGC 9 cut(s) 49, 84, 102, 154, 213, 264, 311, 314, 316
SspMI CTAG 1 cut(s) 360
StyD4I CCNGG 5 cut(s) 201, 207, 380, 393, 452
TaiI ACGT 2 cut(s) 147, 339
TaqI TCGA 7 cut(s) 141, 147, 222, 243, 252, 300, 353
TaqII GACCGA 1 cut(s) 132
TauI GCSGC 3 cut(s) 156, 216, 316
TfiI GAWTC 1 cut(s) 120
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 453
VpaK11BI GGWCC 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 206
XhoI CTCGAG 2 cut(s) 242, 352
XmiI GTMKAC 1 cut(s) 147
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.