Rh6CG263500

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013130
Physical Location & Seq
Reverse (-)
43633912 .. 43636249
2338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG263500.1

Sequence Viewer

Length: 483 bp
ATGGCGATGGCCTCCCTTCGCTCCCAAATCCACCGCCTCCCTTCCCTCTCCAAGTCCCTAATCTCCCGATCCTCCGCCACCGCCACCGCCGCCGCCCCCGCCCCATCCTCCGCCAGGAAAGTCTCTGACCGCATCGTCAAGCTCTTCGCGATCGACGTCGACGGCCGGAAGCGCGAGATAGTGGGGCTCTCCGGCCAAACCCTCCTGAAAGCCCTAGCCAACAGCGGCCTGATCGAGCCGGCCTCCCACCGCCTCGAAGACATCGAAGCCTGCTCCTCCGAGTGCGAGGTCAACATCGCTCAGGAGTGGTTCGATAAGCTGCCGCCGCGGACCTACGACGAGGAGTACTTGCTCAAGAAGTACGCTAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGATCGTCCTCACCAATGAGCTTCAAGGTATGGTGGTCGCGATCCCCGAGCCCAAACCCTGGGACATTCCGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.68

Weight (kDa)

9.05

Isoelectric Point (pI)

59.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
AatII GACGTC 1 cut(s) 159
AccB7I CCANNNNNTGG 1 cut(s) 465
AccI GTMKAC 1 cut(s) 159
AccII CGCG 4 cut(s) 149, 174, 328, 446
AclWI GGATC 2 cut(s) 63, 442
AcoI YGGCCR 2 cut(s) 163, 193
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 347, 362
AfiI CCNNNNNNNGG 2 cut(s) 114, 465
AgsI TTSAA 1 cut(s) 431
AjnI CCWGG 3 cut(s) 113, 392, 464
AluBI AGCT 3 cut(s) 142, 319, 427
AluI AGCT 3 cut(s) 142, 319, 427
Alw26I GTCTC 1 cut(s) 127
AlwI GGATC 2 cut(s) 63, 442
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 5 cut(s) 9, 163, 193, 226, 240
ApeKI GCWGC 1 cut(s) 319
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 330
AsuHPI GGTGA 1 cut(s) 409
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 330
BanII GRGCYC 2 cut(s) 189, 459
BbsI GAAGAC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 306
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 3 cut(s) 115, 394, 466
BcoDI GTCTC 1 cut(s) 127
BfaI CTAG 3 cut(s) 215, 366, 372
BisI GCNGC 6 cut(s) 90, 93, 226, 320, 323, 326
BlsI GCNGC 6 cut(s) 91, 94, 227, 321, 324, 327
BmcAI AGTACT 1 cut(s) 347
Bme1390I CCNGG 3 cut(s) 115, 394, 466
Bme18I GGWCC 1 cut(s) 330
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 330
BmrFI CCNGG 3 cut(s) 115, 394, 466
BmsI GCATC 2 cut(s) 141, 392
BpiI GAAGAC 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 227, 259
BpmI CTGGAG 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 3 cut(s) 326, 464, 465
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 465
Bse118I RCCGGY 1 cut(s) 238
BseBI CCWGG 3 cut(s) 115, 394, 466
BseDI CCNNGG 3 cut(s) 326, 464, 465
BseGI GGATG 2 cut(s) 104, 407
BseLI CCNNNNNNNGG 2 cut(s) 114, 465
BseMII CTCAG 1 cut(s) 314
BseRI GAGGAG 2 cut(s) 265, 356
BseX3I CGGCCG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 4 cut(s) 149, 174, 328, 446
Bsh1285I CGRYCG 2 cut(s) 153, 166
BshFI GGCC 5 cut(s) 11, 165, 195, 228, 242
BsiEI CGRYCG 2 cut(s) 153, 166
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 3 cut(s) 166, 192, 239
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 114, 465
BsmAI GTCTC 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 11, 165, 195, 228, 242
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 189, 459
Bsp143I GATC 5 cut(s) 68, 150, 231, 408, 447
Bsp68I TCGCGA 2 cut(s) 149, 446
BspANI GGCC 5 cut(s) 11, 165, 195, 228, 242
BspCNI CTCAG 1 cut(s) 313
BspFNI CGCG 4 cut(s) 149, 174, 328, 446
BspPI GGATC 2 cut(s) 63, 442
BspQI GCTCTTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 3 cut(s) 326, 464, 465
BssMI GATC 5 cut(s) 68, 150, 231, 408, 447
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 3 cut(s) 115, 394, 466
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 2 cut(s) 240, 271
BstDEI CTNAG 1 cut(s) 300
BstDSI CCRYGG 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 112
BstF5I GGATG 2 cut(s) 104, 407
BstFNI CGCG 4 cut(s) 149, 174, 328, 446
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 71, 153, 234, 411, 450
BstMAI GTCTC 1 cut(s) 127
BstMBI GATC 5 cut(s) 68, 150, 231, 408, 447
BstMCI CGRYCG 2 cut(s) 153, 166
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 171, 325, 394
BstNI CCWGG 3 cut(s) 115, 394, 466
BstSCI CCNGG 3 cut(s) 113, 392, 464
BstUI CGCG 4 cut(s) 149, 174, 328, 446
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 1 cut(s) 264
BstZI CGGCCG 1 cut(s) 163
BsuRI GGCC 5 cut(s) 11, 165, 195, 228, 242
BtgI CCRYGG 1 cut(s) 326
BtgZI GCGATG 2 cut(s) 20, 280
BtsCI GGATG 2 cut(s) 104, 407
BtuMI TCGCGA 2 cut(s) 149, 446
Cac8I GCNNGC 2 cut(s) 240, 271
CfoI GCGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 330
Cfr42I CCGCGG 1 cut(s) 329
Csp6I GTAC 2 cut(s) 346, 361
CviQI GTAC 2 cut(s) 346, 361
DdeI CTNAG 1 cut(s) 300
DpnI GATC 5 cut(s) 70, 152, 233, 410, 449
DpnII GATC 5 cut(s) 68, 150, 231, 408, 447
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EaeI YGGCCR 2 cut(s) 163, 193
EagI CGGCCG 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 64, 100
EclXI CGGCCG 1 cut(s) 163
Eco24I GRGCYC 2 cut(s) 189, 459
Eco47I GGWCC 1 cut(s) 330
Eco52I CGGCCG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 452
EcoNI CCTNNNNNAGG 1 cut(s) 112
EcoRII CCWGG 3 cut(s) 113, 392, 464
EcoT38I GRGCYC 2 cut(s) 189, 459
FaiI YATR 1 cut(s) 437
FaqI GGGAC 1 cut(s) 40
FauI CCCGC 1 cut(s) 106
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 6 cut(s) 90, 93, 226, 320, 323, 326
FokI GGATG 2 cut(s) 91, 414
FriOI GRGCYC 2 cut(s) 189, 459
Fsp4HI GCNGC 6 cut(s) 90, 93, 226, 320, 323, 326
FspBI CTAG 3 cut(s) 215, 366, 372
GlaI GCGC 1 cut(s) 173
GluI GCNGC 6 cut(s) 90, 93, 226, 320, 323, 326
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 5 cut(s) 11, 165, 195, 228, 242
HapII CCGG 3 cut(s) 166, 192, 239
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 160, 292
HindII GTYRAC 2 cut(s) 160, 292
HpaII CCGG 3 cut(s) 166, 192, 239
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 2 cut(s) 160, 292
Hpy188I TCNGA 3 cut(s) 127, 280, 401
Hpy188III TCNNGA 6 cut(s) 66, 148, 205, 302, 355, 445
Hpy8I GTNNAC 2 cut(s) 160, 292
Hpy99I CGWCG 4 cut(s) 158, 161, 164, 341
HpyAV CCTTC 2 cut(s) 26, 51
HpyCH4IV ACGT 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 171, 325, 394
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 172
KroI GCCGGC 1 cut(s) 238
KroNI GCCGGC 1 cut(s) 240
KspI CCGCGG 1 cut(s) 329
Kzo9I GATC 5 cut(s) 68, 150, 231, 408, 447
LguI GCTCTTC 1 cut(s) 149
LmnI GCTCC 2 cut(s) 26, 278
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 2 cut(s) 141, 392
MaeI CTAG 3 cut(s) 215, 366, 372
MaeII ACGT 1 cut(s) 156
MalI GATC 5 cut(s) 70, 152, 233, 410, 449
MboI GATC 5 cut(s) 68, 150, 231, 408, 447
MboII GAAGA 2 cut(s) 136, 269
MhlI GDGCHC 2 cut(s) 189, 459
MroNI GCCGGC 1 cut(s) 238
MspA1I CMGCKG 2 cut(s) 225, 328
MspI CCGG 3 cut(s) 166, 192, 239
MspR9I CCNGG 3 cut(s) 115, 394, 466
MvaI CCWGG 3 cut(s) 115, 394, 466
MvnI CGCG 4 cut(s) 149, 174, 328, 446
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 171, 325, 394
NaeI GCCGGC 1 cut(s) 240
NdeII GATC 5 cut(s) 68, 150, 231, 408, 447
NgoMIV GCCGGC 1 cut(s) 238
NruI TCGCGA 2 cut(s) 149, 446
PasI CCCWGGG 1 cut(s) 465
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 3 cut(s) 153, 261, 450
PdiI GCCGGC 1 cut(s) 240
PflMI CCANNNNNTGG 1 cut(s) 465
PkrI GCNGC 6 cut(s) 91, 94, 227, 321, 324, 327
Ple19I CGATCG 1 cut(s) 153
Psp6I CCWGG 3 cut(s) 113, 392, 464
PspGI CCWGG 3 cut(s) 113, 392, 464
PspPI GGNCC 1 cut(s) 330
PvuI CGATCG 1 cut(s) 153
RruI TCGCGA 2 cut(s) 149, 446
RsaI GTAC 2 cut(s) 347, 362
RsaNI GTAC 2 cut(s) 346, 361
SacII CCGCGG 1 cut(s) 329
SalI GTCGAC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 149
SatI GCNGC 6 cut(s) 90, 93, 226, 320, 323, 326
Sau3AI GATC 5 cut(s) 68, 150, 231, 408, 447
Sau96I GGNCC 1 cut(s) 330
ScaI AGTACT 1 cut(s) 347
ScrFI CCNGG 3 cut(s) 115, 394, 466
SduI GDGCHC 2 cut(s) 189, 459
SetI ASST 7 cut(s) 144, 159, 291, 321, 335, 429, 436
SfaNI GCATC 2 cut(s) 141, 392
Sfr303I CCGCGG 1 cut(s) 329
SgrBI CCGCGG 1 cut(s) 329
SgrDI CGTCGACG 1 cut(s) 158
SinI GGWCC 1 cut(s) 330
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SspMI CTAG 3 cut(s) 215, 366, 372
StyD4I CCNGG 3 cut(s) 113, 392, 464
TaiI ACGT 1 cut(s) 159
TaqI TCGA 6 cut(s) 153, 159, 234, 255, 264, 312
TatI WGTACW 1 cut(s) 345
TauI GCSGC 5 cut(s) 92, 95, 228, 325, 328
TseI GCWGC 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 465
Van91I CCANNNNNTGG 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 330
XagI CCTNNNNNAGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 159
XspI CTAG 3 cut(s) 215, 366, 372
ZraI GACGTC 1 cut(s) 157
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.