RchiOBHm_Chr6g0282621

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0013130
Physical Location & Seq
Reverse (-)
45852125 .. 45852933
809 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25339

Sequence Viewer

Length: 477 bp
ATGGCGATGGCCTCCCTCCGCTCCCAAATCCACCGCCTCCCTTCCCTCTCCAAGTCCCTAATCTCCAGATCCTCCGCCACCGCCACCGCCACCGCCGCCCCATCCTCCTCCAGGAAAGTCTCCGACCGAATCGTCAAGCTCTTCGCGATCGACGTCGACGGCCGGAAGCGCGAGATAGTGGGGCTCTCCGGCCAAACCCTCCTGAAAGCCCTAGCCAACAGCGGCCTGATCGAACCGGCCTCCCACCGCCTCGAAGAAATCGACGCCTGCTCCTCCGAGTGCGAGGTCAACATCGCTCAGGAGTGGTTCGATAAGCTGCCGCCGCGGACCTACGACGAGGAGTACTTGCTCAAGAAGTACGCTAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGATCGTCCTCACCAATGAGCTTCAAGGTATGGTGGTTGCGATCCCCGAGCCCAAACCCTGGGACATTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.47

Weight (kDa)

9.07

Isoelectric Point (pI)

59.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AatII GACGTC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 462
AccBSI CCGCTC 1 cut(s) 21
AccI GTMKAC 1 cut(s) 156
AccII CGCG 3 cut(s) 146, 171, 325
AclWI GGATC 2 cut(s) 63, 439
AcoI YGGCCR 2 cut(s) 160, 190
AcyI GRCGYC 2 cut(s) 153, 264
AfaI GTAC 2 cut(s) 344, 359
AfiI CCNNNNNNNGG 2 cut(s) 111, 462
AgsI TTSAA 1 cut(s) 428
AjnI CCWGG 3 cut(s) 110, 389, 461
AluBI AGCT 3 cut(s) 139, 316, 424
AluI AGCT 3 cut(s) 139, 316, 424
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 2 cut(s) 63, 439
Ama87I CYCGRG 1 cut(s) 449
AoxI GGCC 5 cut(s) 9, 160, 190, 223, 237
ApeKI GCWGC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 406
AvaI CYCGRG 1 cut(s) 449
AvaII GGWCC 1 cut(s) 327
BanII GRGCYC 2 cut(s) 186, 456
BbvI GCAGC 1 cut(s) 303
BccI CCATC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 175
BciT130I CCWGG 3 cut(s) 112, 391, 463
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 3 cut(s) 212, 363, 369
BisI GCNGC 5 cut(s) 96, 223, 317, 320, 323
BlsI GCNGC 5 cut(s) 97, 224, 318, 321, 324
BmcAI AGTACT 1 cut(s) 344
Bme1390I CCNGG 3 cut(s) 112, 391, 463
Bme18I GGWCC 1 cut(s) 327
BmeT110I CYCGRG 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 112, 391, 463
BmsI GCATC 1 cut(s) 389
BpmI CTGGAG 3 cut(s) 49, 94, 373
Bpu10I CCTNAGC 1 cut(s) 297
BpuEI CTTGAG 1 cut(s) 335
BsaHI GRCGYC 2 cut(s) 153, 264
BsaJI CCNNGG 3 cut(s) 323, 461, 462
BsaXI ACNNNNNCTCC 4 cut(s) 254, 284, 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 462
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 3 cut(s) 112, 391, 463
BseDI CCNNGG 3 cut(s) 323, 461, 462
BseGI GGATG 2 cut(s) 101, 404
BseLI CCNNNNNNNGG 2 cut(s) 111, 462
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 3 cut(s) 97, 262, 353
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 303
Bsh1236I CGCG 3 cut(s) 146, 171, 325
Bsh1285I CGRYCG 3 cut(s) 127, 150, 163
BshFI GGCC 5 cut(s) 11, 162, 192, 225, 239
BsiEI CGRYCG 3 cut(s) 127, 150, 163
BsiHKCI CYCGRG 1 cut(s) 449
BsiSI CCGG 3 cut(s) 163, 189, 236
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 111, 462
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 11, 162, 192, 225, 239
BsoBI CYCGRG 1 cut(s) 449
Bsp1286I GDGCHC 2 cut(s) 186, 456
Bsp143I GATC 5 cut(s) 68, 147, 228, 405, 444
Bsp68I TCGCGA 1 cut(s) 146
BspANI GGCC 5 cut(s) 11, 162, 192, 225, 239
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 3 cut(s) 146, 171, 325
BspPI GGATC 2 cut(s) 63, 439
BspQI GCTCTTC 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 21
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 323, 461, 462
BssMI GATC 5 cut(s) 68, 147, 228, 405, 444
BssNI GRCGYC 2 cut(s) 153, 264
Bst2UI CCWGG 3 cut(s) 112, 391, 463
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 2 cut(s) 153, 264
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 101, 404
BstFNI CGCG 3 cut(s) 146, 171, 325
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 5 cut(s) 71, 150, 231, 408, 447
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 5 cut(s) 68, 147, 228, 405, 444
BstMCI CGRYCG 3 cut(s) 127, 150, 163
BstMWI GCNNNNNNNGC 4 cut(s) 95, 168, 322, 391
BstNI CCWGG 3 cut(s) 112, 391, 463
BstSCI CCNGG 3 cut(s) 110, 389, 461
BstUI CGCG 3 cut(s) 146, 171, 325
BstV1I GCAGC 1 cut(s) 303
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 160
BsuRI GGCC 5 cut(s) 11, 162, 192, 225, 239
BtgI CCRYGG 1 cut(s) 323
BtgZI GCGATG 2 cut(s) 20, 277
BtsCI GGATG 2 cut(s) 101, 404
BtuMI TCGCGA 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 268
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 327
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 343, 358
CviQI GTAC 2 cut(s) 343, 358
DdeI CTNAG 1 cut(s) 297
DpnI GATC 5 cut(s) 70, 149, 230, 407, 446
DpnII GATC 5 cut(s) 68, 147, 228, 405, 444
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
EaeI YGGCCR 2 cut(s) 160, 190
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 160
Eco24I GRGCYC 2 cut(s) 186, 456
Eco47I GGWCC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 160
Eco88I CYCGRG 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 110, 389, 461
EcoT38I GRGCYC 2 cut(s) 186, 456
FaiI YATR 1 cut(s) 434
FaqI GGGAC 1 cut(s) 40
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 5 cut(s) 96, 223, 317, 320, 323
FokI GGATG 2 cut(s) 88, 411
FriOI GRGCYC 2 cut(s) 186, 456
Fsp4HI GCNGC 5 cut(s) 96, 223, 317, 320, 323
FspBI CTAG 3 cut(s) 212, 363, 369
GlaI GCGC 1 cut(s) 170
GluI GCNGC 5 cut(s) 96, 223, 317, 320, 323
GsuI CTGGAG 3 cut(s) 49, 94, 373
HaeIII GGCC 5 cut(s) 11, 162, 192, 225, 239
HapII CCGG 3 cut(s) 163, 189, 236
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 2 cut(s) 153, 264
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 2 cut(s) 157, 289
HindII GTYRAC 2 cut(s) 157, 289
HinfI GANTC 1 cut(s) 129
HpaII CCGG 3 cut(s) 163, 189, 236
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 2 cut(s) 157, 289
Hpy188I TCNGA 3 cut(s) 124, 277, 398
Hpy188III TCNNGA 5 cut(s) 66, 145, 202, 299, 352
Hpy8I GTNNAC 2 cut(s) 157, 289
Hpy99I CGWCG 5 cut(s) 155, 158, 161, 266, 338
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 168, 322, 391
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 2 cut(s) 153, 264
HspAI GCGC 1 cut(s) 169
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 5 cut(s) 68, 147, 228, 405, 444
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 26, 275
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 1 cut(s) 389
MaeI CTAG 3 cut(s) 212, 363, 369
MaeII ACGT 1 cut(s) 153
MalI GATC 5 cut(s) 70, 149, 230, 407, 446
MbiI CCGCTC 1 cut(s) 21
MboI GATC 5 cut(s) 68, 147, 228, 405, 444
MboII GAAGA 2 cut(s) 133, 266
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 2 cut(s) 186, 456
MmeI TCCRAC 1 cut(s) 147
MspA1I CMGCKG 2 cut(s) 222, 325
MspI CCGG 3 cut(s) 163, 189, 236
MspR9I CCNGG 3 cut(s) 112, 391, 463
MvaI CCWGG 3 cut(s) 112, 391, 463
MvnI CGCG 3 cut(s) 146, 171, 325
MwoI GCNNNNNNNGC 4 cut(s) 95, 168, 322, 391
NdeII GATC 5 cut(s) 68, 147, 228, 405, 444
NruI TCGCGA 1 cut(s) 146
PasI CCCWGGG 1 cut(s) 462
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 258
PfeI GAWTC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 110
PkrI GCNGC 5 cut(s) 97, 224, 318, 321, 324
Ple19I CGATCG 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 110, 389, 461
PspGI CCWGG 3 cut(s) 110, 389, 461
PspPI GGNCC 1 cut(s) 327
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 150
RruI TCGCGA 1 cut(s) 146
RsaI GTAC 2 cut(s) 344, 359
RsaNI GTAC 2 cut(s) 343, 358
SacII CCGCGG 1 cut(s) 326
SalI GTCGAC 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 5 cut(s) 96, 223, 317, 320, 323
Sau3AI GATC 5 cut(s) 68, 147, 228, 405, 444
Sau96I GGNCC 1 cut(s) 327
ScaI AGTACT 1 cut(s) 344
ScrFI CCNGG 3 cut(s) 112, 391, 463
SduI GDGCHC 2 cut(s) 186, 456
SetI ASST 7 cut(s) 141, 156, 288, 318, 332, 426, 433
SfaNI GCATC 1 cut(s) 389
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SgrDI CGTCGACG 1 cut(s) 155
SinI GGWCC 1 cut(s) 327
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
SspMI CTAG 3 cut(s) 212, 363, 369
StyD4I CCNGG 3 cut(s) 110, 389, 461
TaiI ACGT 1 cut(s) 156
TaqI TCGA 6 cut(s) 150, 156, 231, 252, 261, 309
TaqII GACCGA 1 cut(s) 141
TatI WGTACW 1 cut(s) 342
TauI GCSGC 4 cut(s) 98, 225, 322, 325
TfiI GAWTC 1 cut(s) 129
TseI GCWGC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 462
VpaK11BI GGWCC 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 3 cut(s) 212, 363, 369
ZraI GACGTC 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.