Rw6G022590

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0013130
Physical Location & Seq
Reverse (-)
44550269 .. 44550742
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G022590.1

Sequence Viewer

Length: 474 bp
ATGGCGATGGCCTCCCTTCGCTCCCAAATCCACCGCCTCCCTTCCCTCTCCAAGTCCCTAATCTCCAGATCCTCTGCCACCGCCACCGCCGCCGCCCCATCCTCCTCCAGGAAAGTCTCCGACCGCATCGTCAAGCTCTTCGCGATCGACGTTGACGGCCGGAAGCGCGAGATAGTGGGTCTCTCCGGCCAAACCCTCCTGAAAGCCCTAGCCAACAGCGGCCTGATCGAGCCGGCCTCCCACCGCCTCGAAGACATCGACGCCTGCTCCTCCGAGTGCGAGGTCAACATCGCTCAGGAGTGGTTCGATAAGCTGCCGCCGCGGACCTACGACGAGGAGTACTTGCTCAAGAAGTACGCTAGGGCTAGGGTTCTCAACAAGCACTCCAGGCTCGGATGCCAGATCGTCCTCACCAATGAGCTTCAAGGAATGGTGGTCGCGATCCCCGAGCCCAAACCCTGGGACATTCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.35

Weight (kDa)

9.07

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 459
AccII CGCG 4 cut(s) 143, 168, 322, 440
AclWI GGATC 2 cut(s) 63, 436
AcoI YGGCCR 2 cut(s) 157, 187
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 2 cut(s) 341, 356
AfiI CCNNNNNNNGG 2 cut(s) 108, 459
AgsI TTSAA 1 cut(s) 425
AjnI CCWGG 3 cut(s) 107, 386, 458
AluBI AGCT 3 cut(s) 136, 313, 421
AluI AGCT 3 cut(s) 136, 313, 421
Alw26I GTCTC 2 cut(s) 121, 185
AlwI GGATC 2 cut(s) 63, 436
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 5 cut(s) 9, 157, 187, 220, 234
ApeKI GCWGC 1 cut(s) 313
AspLEI GCGC 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 324
BanII GRGCYC 1 cut(s) 453
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 300
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 172
BciT130I CCWGG 3 cut(s) 109, 388, 460
BcoDI GTCTC 2 cut(s) 121, 185
BfaI CTAG 3 cut(s) 209, 360, 366
BisI GCNGC 6 cut(s) 90, 93, 220, 314, 317, 320
BlsI GCNGC 6 cut(s) 91, 94, 221, 315, 318, 321
BmcAI AGTACT 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 109, 388, 460
Bme18I GGWCC 1 cut(s) 324
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 3 cut(s) 109, 388, 460
BmsI GCATC 2 cut(s) 135, 386
BpiI GAAGAC 1 cut(s) 258
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 3 cut(s) 49, 91, 370
Bpu10I CCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 320, 458, 459
BsaXI ACNNNNNCTCC 4 cut(s) 251, 281, 368, 398
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 459
Bse118I RCCGGY 1 cut(s) 232
BseBI CCWGG 3 cut(s) 109, 388, 460
BseDI CCNNGG 3 cut(s) 320, 458, 459
BseGI GGATG 2 cut(s) 98, 401
BseLI CCNNNNNNNGG 2 cut(s) 108, 459
BseMII CTCAG 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 94, 259, 350
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 300
Bsh1236I CGCG 4 cut(s) 143, 168, 322, 440
Bsh1285I CGRYCG 3 cut(s) 124, 147, 160
BshFI GGCC 5 cut(s) 11, 159, 189, 222, 236
BsiEI CGRYCG 3 cut(s) 124, 147, 160
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 3 cut(s) 160, 186, 233
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 2 cut(s) 108, 459
BsmAI GTCTC 2 cut(s) 121, 185
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 5 cut(s) 11, 159, 189, 222, 236
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 1 cut(s) 453
Bsp143I GATC 5 cut(s) 68, 144, 225, 402, 441
Bsp68I TCGCGA 2 cut(s) 143, 440
BspANI GGCC 5 cut(s) 11, 159, 189, 222, 236
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 4 cut(s) 143, 168, 322, 440
BspPI GGATC 2 cut(s) 63, 436
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 320, 458, 459
BssMI GATC 5 cut(s) 68, 144, 225, 402, 441
BssNI GRCGYC 1 cut(s) 261
Bst2UI CCWGG 3 cut(s) 109, 388, 460
Bst6I CTCTTC 1 cut(s) 143
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 234, 265
BstDEI CTNAG 1 cut(s) 294
BstDSI CCRYGG 1 cut(s) 320
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 2 cut(s) 98, 401
BstFNI CGCG 4 cut(s) 143, 168, 322, 440
BstHHI GCGC 1 cut(s) 168
BstKTI GATC 5 cut(s) 71, 147, 228, 405, 444
BstMAI GTCTC 2 cut(s) 121, 185
BstMBI GATC 5 cut(s) 68, 144, 225, 402, 441
BstMCI CGRYCG 3 cut(s) 124, 147, 160
BstMWI GCNNNNNNNGC 4 cut(s) 89, 165, 319, 388
BstNI CCWGG 3 cut(s) 109, 388, 460
BstSCI CCNGG 3 cut(s) 107, 386, 458
BstUI CGCG 4 cut(s) 143, 168, 322, 440
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 5 cut(s) 11, 159, 189, 222, 236
BtgI CCRYGG 1 cut(s) 320
BtgZI GCGATG 2 cut(s) 20, 274
BtsCI GGATG 2 cut(s) 98, 401
BtuMI TCGCGA 2 cut(s) 143, 440
Cac8I GCNNGC 2 cut(s) 234, 265
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 324
Cfr42I CCGCGG 1 cut(s) 323
CseI GACGC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 340, 355
CviQI GTAC 2 cut(s) 340, 355
DdeI CTNAG 1 cut(s) 294
DpnI GATC 5 cut(s) 70, 146, 227, 404, 443
DpnII GATC 5 cut(s) 68, 144, 225, 402, 441
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
EaeI YGGCCR 2 cut(s) 157, 187
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 453
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 324
Eco52I CGGCCG 1 cut(s) 157
Eco88I CYCGRG 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 107, 386, 458
EcoT38I GRGCYC 1 cut(s) 453
FaqI GGGAC 1 cut(s) 40
Fnu4HI GCNGC 6 cut(s) 90, 93, 220, 314, 317, 320
FokI GGATG 2 cut(s) 85, 408
FriOI GRGCYC 1 cut(s) 453
Fsp4HI GCNGC 6 cut(s) 90, 93, 220, 314, 317, 320
FspBI CTAG 3 cut(s) 209, 360, 366
GlaI GCGC 1 cut(s) 167
GluI GCNGC 6 cut(s) 90, 93, 220, 314, 317, 320
GsuI CTGGAG 3 cut(s) 49, 91, 370
HaeIII GGCC 5 cut(s) 11, 159, 189, 222, 236
HapII CCGG 3 cut(s) 160, 186, 233
HgaI GACGC 1 cut(s) 269
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 261
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 2 cut(s) 154, 286
HindII GTYRAC 2 cut(s) 154, 286
HpaII CCGG 3 cut(s) 160, 186, 233
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 2 cut(s) 154, 286
Hpy188I TCNGA 3 cut(s) 121, 274, 395
Hpy188III TCNNGA 6 cut(s) 66, 142, 199, 296, 349, 439
Hpy8I GTNNAC 2 cut(s) 154, 286
Hpy99I CGWCG 3 cut(s) 152, 263, 335
HpyAV CCTTC 2 cut(s) 26, 51
HpyCH4IV ACGT 1 cut(s) 150
HpyF10VI GCNNNNNNNGC 4 cut(s) 89, 165, 319, 388
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 261
HspAI GCGC 1 cut(s) 166
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
KspI CCGCGG 1 cut(s) 323
Kzo9I GATC 5 cut(s) 68, 144, 225, 402, 441
LguI GCTCTTC 1 cut(s) 143
LmnI GCTCC 2 cut(s) 26, 272
Lsp1109I GCAGC 1 cut(s) 300
LweI GCATC 2 cut(s) 135, 386
MaeI CTAG 3 cut(s) 209, 360, 366
MaeII ACGT 1 cut(s) 150
MalI GATC 5 cut(s) 70, 146, 227, 404, 443
MboI GATC 5 cut(s) 68, 144, 225, 402, 441
MboII GAAGA 2 cut(s) 130, 263
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 453
MmeI TCCRAC 1 cut(s) 144
MroNI GCCGGC 1 cut(s) 232
MspA1I CMGCKG 2 cut(s) 219, 322
MspI CCGG 3 cut(s) 160, 186, 233
MspR9I CCNGG 3 cut(s) 109, 388, 460
MvaI CCWGG 3 cut(s) 109, 388, 460
MvnI CGCG 4 cut(s) 143, 168, 322, 440
MwoI GCNNNNNNNGC 4 cut(s) 89, 165, 319, 388
NaeI GCCGGC 1 cut(s) 234
NdeII GATC 5 cut(s) 68, 144, 225, 402, 441
NgoMIV GCCGGC 1 cut(s) 232
NruI TCGCGA 2 cut(s) 143, 440
PasI CCCWGGG 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 3 cut(s) 147, 255, 444
PdiI GCCGGC 1 cut(s) 234
PflMI CCANNNNNTGG 1 cut(s) 459
PfoI TCCNGGA 1 cut(s) 107
PkrI GCNGC 6 cut(s) 91, 94, 221, 315, 318, 321
Ple19I CGATCG 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 107, 386, 458
PspGI CCWGG 3 cut(s) 107, 386, 458
PspPI GGNCC 1 cut(s) 324
PsuI RGATCY 1 cut(s) 68
PvuI CGATCG 1 cut(s) 147
RruI TCGCGA 2 cut(s) 143, 440
RsaI GTAC 2 cut(s) 341, 356
RsaNI GTAC 2 cut(s) 340, 355
SacII CCGCGG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 143
SatI GCNGC 6 cut(s) 90, 93, 220, 314, 317, 320
Sau3AI GATC 5 cut(s) 68, 144, 225, 402, 441
Sau96I GGNCC 1 cut(s) 324
ScaI AGTACT 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 109, 388, 460
SduI GDGCHC 1 cut(s) 453
SetI ASST 6 cut(s) 138, 153, 285, 315, 329, 423
SfaNI GCATC 2 cut(s) 135, 386
Sfr303I CCGCGG 1 cut(s) 323
SgrBI CCGCGG 1 cut(s) 323
SinI GGWCC 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
SspMI CTAG 3 cut(s) 209, 360, 366
StyD4I CCNGG 3 cut(s) 107, 386, 458
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 147, 228, 249, 258, 306
TatI WGTACW 1 cut(s) 339
TauI GCSGC 5 cut(s) 92, 95, 222, 319, 322
TseI GCWGC 1 cut(s) 313
TspGWI ACGGA 1 cut(s) 459
Van91I CCANNNNNTGG 1 cut(s) 459
VpaK11BI GGWCC 1 cut(s) 324
XagI CCTNNNNNAGG 1 cut(s) 106
XspI CTAG 3 cut(s) 209, 360, 366
ZrmI AGTACT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.