pycom05g14940

Adrenodoxin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0013130
Physical Location & Seq
Reverse (-)
18522187 .. 18522672
486 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g14940.1

Sequence Viewer

Length: 486 bp
ATGGCGATGGCGAGCCTTCAGAGACTCCGTCACTCTCAAATGCTCCACCGCCTCCCTTCCATCTCCTTAATCTCCAGATCCTCCGCCTCCTCCGCCTCCACATCCTCCCCCACTCACTCCGCCAAAGTCTCCGACCGAATCGTCAAGCTCTTCGCGATCGACGTCGACGGCCGCAAGCGCGAGGTGGTGGGCCTATCGGGCCACACTCTCCTCAAGGCCCTGGCCCAGAGGGGCCTGATCGACCCGGCCTCCCACCGGCTCGAGGACATCGACGCCTGCTCCGCCGAGTGCGAAGTCAACATTGCTCAGGAATGGTTCGACAAGCTCCCGCCGCGTTCCTACGACGAGGAGTACGTGCTGAAGAGGAACTCTAGGGCTAGGGTTCTCAACAAGCATTCCAGGCTGGGATGCCAGGTCGTCCTCACTCCAGAGCTTCAAGGTATGGTGGTTGCTGTCCCTGAGGCCAAACCCTGGGACATTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.85

Weight (kDa)

9.15

Isoelectric Point (pI)

54.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07480
fragaria_vesca FvH4_2g17650
malus_domestica MD10G1150500.v1.1
prunus_persica Prupe.8G188900_v2.0.a1 Prupe.8G188900_v2.0.a1
pyrus_communis pycom05g14940
rosa_chinensis RchiOBHm_Chr6g0282621
rosa_laevigata RLG00000012881
rosa_multiflora Rmu_co8059372.1_g000001 Rmu_sc0000283.1_g000001 Rmu_sc0005697.1_g000001
rosa_roxburghii Rroxscaffold_7G00186220
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6AG261200 Rh6BG264400 Rh6CG263500 Rh6DG255500
rosa_wichuraiana Rw6G022590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 1 cut(s) 165
AccB7I CCANNNNNTGG 1 cut(s) 471
AccI GTMKAC 1 cut(s) 165
AccII CGCG 3 cut(s) 155, 180, 334
AciI CCGC 8 cut(s) 49, 84, 93, 120, 172, 282, 329, 332
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 380
AcyI GRCGYC 2 cut(s) 162, 273
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 255, 262, 471
AgsI TTSAA 1 cut(s) 437
AjnI CCWGG 4 cut(s) 219, 398, 411, 470
AluBI AGCT 3 cut(s) 148, 325, 433
AluI AGCT 3 cut(s) 148, 325, 433
Alw26I GTCTC 2 cut(s) 16, 133
AlwI GGATC 1 cut(s) 72
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 8 cut(s) 169, 190, 199, 216, 222, 232, 246, 462
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 5 cut(s) 190, 199, 217, 223, 232
AsuC2I CCSGG 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 459
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 4 cut(s) 221, 400, 413, 472
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 16, 133
BfaI CTAG 2 cut(s) 372, 378
BglI GCCNNNNNGGC 1 cut(s) 198
BisI GCNGC 2 cut(s) 172, 332
BlsI GCNGC 2 cut(s) 173, 333
Bme1390I CCNGG 5 cut(s) 221, 245, 400, 413, 472
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 5 cut(s) 190, 199, 217, 223, 232
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 5 cut(s) 221, 245, 400, 413, 472
BmsI GCATC 1 cut(s) 398
BpmI CTGGAG 2 cut(s) 58, 411
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 355
BsaHI GRCGYC 2 cut(s) 162, 273
BsaJI CCNNGG 3 cut(s) 219, 470, 471
BsaXI ACNNNNNCTCC 4 cut(s) 233, 263, 263, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 255, 262, 471
Bse118I RCCGGY 1 cut(s) 255
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 300
BseBI CCWGG 4 cut(s) 221, 400, 413, 472
BseDI CCNNGG 3 cut(s) 219, 470, 471
BseGI GGATG 2 cut(s) 101, 413
BseLI CCNNNNNNNGG 3 cut(s) 255, 262, 471
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 2 cut(s) 320, 450
BseRI GAGGAG 3 cut(s) 79, 200, 362
BseX3I CGGCCG 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 403
Bsh1236I CGCG 3 cut(s) 155, 180, 334
Bsh1285I CGRYCG 3 cut(s) 136, 159, 172
BshFI GGCC 8 cut(s) 171, 192, 201, 218, 224, 234, 248, 464
BsiEI CGRYCG 3 cut(s) 136, 159, 172
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 2 cut(s) 245, 256
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 3 cut(s) 255, 262, 471
BsmAI GTCTC 2 cut(s) 16, 133
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 8 cut(s) 171, 192, 201, 218, 224, 234, 248, 464
BsoBI CYCGRG 1 cut(s) 260
Bsp143I GATC 3 cut(s) 77, 156, 237
Bsp68I TCGCGA 1 cut(s) 155
BspACI CCGC 8 cut(s) 49, 84, 93, 120, 172, 282, 329, 332
BspANI GGCC 8 cut(s) 171, 192, 201, 218, 224, 234, 248, 464
BspCNI CTCAG 2 cut(s) 319, 451
BspFNI CGCG 3 cut(s) 155, 180, 334
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 255
BssECI CCNNGG 3 cut(s) 219, 470, 471
BssMI GATC 3 cut(s) 77, 156, 237
BssNI GRCGYC 2 cut(s) 162, 273
Bst2UI CCWGG 4 cut(s) 221, 400, 413, 472
Bst6I CTCTTC 2 cut(s) 155, 356
BstACI GRCGYC 2 cut(s) 162, 273
BstBAI YACGTR 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 13, 176, 277
BstDEI CTNAG 2 cut(s) 306, 459
BstF5I GGATG 2 cut(s) 101, 413
BstFNI CGCG 3 cut(s) 155, 180, 334
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 80, 159, 240
BstMAI GTCTC 2 cut(s) 16, 133
BstMBI GATC 3 cut(s) 77, 156, 237
BstMCI CGRYCG 3 cut(s) 136, 159, 172
BstMWI GCNNNNNNNGC 6 cut(s) 92, 177, 198, 281, 331, 400
BstNI CCWGG 4 cut(s) 221, 400, 413, 472
BstSCI CCNGG 5 cut(s) 219, 243, 398, 411, 470
BstUI CGCG 3 cut(s) 155, 180, 334
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BstZI CGGCCG 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 8 cut(s) 171, 192, 201, 218, 224, 234, 248, 464
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 2 cut(s) 101, 413
BtuMI TCGCGA 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 13, 176, 277
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 5 cut(s) 190, 199, 217, 223, 232
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 352
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 306, 459
DpnI GATC 3 cut(s) 79, 158, 239
DpnII GATC 3 cut(s) 77, 156, 237
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 169
EagI CGGCCG 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 155, 356
EarI CTCTTC 2 cut(s) 155, 356
EciI GGCGGA 4 cut(s) 73, 82, 109, 271
EclXI CGGCCG 1 cut(s) 169
Eco52I CGGCCG 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 2 cut(s) 217, 232
EcoRII CCWGG 4 cut(s) 219, 398, 411, 470
FaiI YATR 2 cut(s) 443, 484
FaqI GGGAC 1 cut(s) 440
FauI CCCGC 1 cut(s) 336
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 172, 332
FokI GGATG 2 cut(s) 88, 420
Fsp4HI GCNGC 2 cut(s) 172, 332
FspBI CTAG 2 cut(s) 372, 378
GlaI GCGC 1 cut(s) 179
GluI GCNGC 2 cut(s) 172, 332
GsaI CCCAGC 1 cut(s) 407
GsuI CTGGAG 2 cut(s) 58, 411
HaeIII GGCC 8 cut(s) 171, 192, 201, 218, 224, 234, 248, 464
HapII CCGG 2 cut(s) 245, 256
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 2 cut(s) 162, 273
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 2 cut(s) 166, 298
HindII GTYRAC 2 cut(s) 166, 298
HinfI GANTC 2 cut(s) 24, 138
HpaII CCGG 2 cut(s) 245, 256
Hpy166II GTNNAC 2 cut(s) 166, 298
Hpy188I TCNGA 2 cut(s) 21, 133
Hpy188III TCNNGA 4 cut(s) 75, 154, 308, 428
Hpy8I GTNNAC 2 cut(s) 166, 298
Hpy99I CGWCG 5 cut(s) 164, 167, 170, 275, 347
HpyAV CCTTC 2 cut(s) 26, 66
HpyCH4IV ACGT 2 cut(s) 162, 354
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 177, 198, 281, 331, 400
HpyF3I CTNAG 2 cut(s) 306, 459
HpySE526I ACGT 2 cut(s) 162, 354
Hsp92I GRCGYC 2 cut(s) 162, 273
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 77, 156, 237
LguI GCTCTTC 1 cut(s) 155
LmnI GCTCC 3 cut(s) 48, 284, 330
LweI GCATC 1 cut(s) 398
MaeI CTAG 2 cut(s) 372, 378
MaeII ACGT 2 cut(s) 162, 354
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 79, 158, 239
MboI GATC 3 cut(s) 77, 156, 237
MboII GAAGA 2 cut(s) 142, 373
MflI RGATCY 1 cut(s) 77
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 156
MseI TTAA 1 cut(s) 68
MspI CCGG 2 cut(s) 245, 256
MspR9I CCNGG 5 cut(s) 221, 245, 400, 413, 472
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 4 cut(s) 221, 400, 413, 472
MvnI CGCG 3 cut(s) 155, 180, 334
MwoI GCNNNNNNNGC 6 cut(s) 92, 177, 198, 281, 331, 400
NciI CCSGG 1 cut(s) 245
NdeII GATC 3 cut(s) 77, 156, 237
NlaIV GGNNCC 1 cut(s) 233
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 29
NruI TCGCGA 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 260
PasI CCCWGGG 1 cut(s) 471
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 3 cut(s) 159, 267, 351
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 27
PflMI CCANNNNNTGG 1 cut(s) 471
PkrI GCNGC 2 cut(s) 173, 333
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 1 cut(s) 18
PpsI GAGTC 1 cut(s) 18
Ppu21I YACGTR 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 219, 398, 411, 470
PspFI CCCAGC 1 cut(s) 403
PspGI CCWGG 4 cut(s) 219, 398, 411, 470
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 5 cut(s) 190, 199, 217, 223, 232
PspXI VCTCGAGB 1 cut(s) 260
PsuI RGATCY 1 cut(s) 77
PsyI GACNNNGTC 1 cut(s) 27
PvuI CGATCG 1 cut(s) 159
RruI TCGCGA 1 cut(s) 155
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SalI GTCGAC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 172, 332
Sau3AI GATC 3 cut(s) 77, 156, 237
Sau96I GGNCC 5 cut(s) 190, 199, 217, 223, 232
SchI GAGTC 1 cut(s) 18
ScrFI CCNGG 5 cut(s) 221, 245, 400, 413, 472
SetI ASST 8 cut(s) 150, 165, 186, 327, 357, 417, 435, 442
SfaNI GCATC 1 cut(s) 398
SfiI GGCCNNNNNGGCC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 260
SgrDI CGTCGACG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 212, 260
SmoI CTYRAG 2 cut(s) 212, 260
SsiI CCGC 8 cut(s) 49, 84, 93, 120, 172, 282, 329, 332
SspMI CTAG 2 cut(s) 372, 378
StyD4I CCNGG 5 cut(s) 219, 243, 398, 411, 470
TaiI ACGT 2 cut(s) 165, 357
TaqI TCGA 6 cut(s) 159, 165, 240, 261, 270, 318
TaqII GACCGA 1 cut(s) 150
TauI GCSGC 2 cut(s) 174, 334
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 2 cut(s) 372, 378
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.