Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012876

Physical Location & Seq

Genomic Coordinates Forward (+)

2391122 .. 2391908

Gene Structure 787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGATCAAGCGGAGCTTGCCAGGATCTTCCAAATGTTCGACAGGAACGGTGATGGCAAAATCACGAAGCAAGAGCTGAATGATTCATTGGAGAATCTAGGAATCTACATTCCAGACAAAGACTTGGTGCAGATGATCGAGAAGATTGATCTCAACGGTGATGGGTACGTGGACATCGAAGAGTTTGGAGGGTTGTACCAGACGATAATGGAGGAAAGAGACGAGGAGGAAGACATGAGAGAGGCTTTCAACGTGTTTGATCAGAACCGGGACGGGTTCATCACGGTGGAAGAGCTAAGGTCTGTGTTAGCTTCCTTGGGGCTCAAACAAGGAAGAACCCTAGAGGATTGCAAGAGGATGATAAGCAAAGTTGACGTTGATGGAGATGGCATGGTGAATTTCAAAGAGTTTAAACAAATGATGAAAGGTGGTGGATTTGCCGCCTTAGGATCAAACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005777 GO:0010008 GO:0012505 GO:0016020 GO:0016021 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031302 GO:0031303 GO:0031410 GO:0031982 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5

Protein Analysis

153

Amino Acids

17.39

Weight (kDa)

4.33

Isoelectric Point (pI)

32.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	5 - 28	3.1e-07	EF hand domain
EF-hand_7	PF13499	5 - 66	1.3e-13	EF-hand domain pair
EF-hand_6	PF13405	5 - 34	1.8e-07	EF-hand domain
EF-hand_5	PF13202	9 - 27	2.6e-07	EF hand
EF-hand_1	PF00036	42 - 65	5.9e-06	EF hand domain
EF-hand_7	PF13499	76 - 142	4.8e-17	EF-hand domain pair
EF-hand_6	PF13405	78 - 107	2.8e-09	EF-hand domain
EF-hand_1	PF00036	79 - 106	3.5e-08	EF hand domain
EF-hand_5	PF13202	80 - 103	9e-08	EF hand
EF-hand_8	PF13833	94 - 142	2e-08	EF-hand domain pair
EF-hand_1	PF00036	116 - 142	2e-08	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012876)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07490 AT4G12860
fragaria_vesca	FvH4_2g17620
malus_domestica	MD05G1156600.v1.1 MD10G1150400.v1.1
prunus_persica	Prupe.8G188800_v2.0.a1
pyrus_communis	pycom05g14920 pycom10g12960
rosa_chinensis	RchiOBHm_Chr6g0282601
rosa_laevigata	RLG00000012882
rosa_multiflora	Rmu_co8242345.1_g000002 Rmu_sc0000283.1_g000002 Rmu_sc0005697.1_g000002
rosa_roxburghii	Rroxscaffold_7G00186230
rosa_rugosa	Rorug06G0148000
rosa_samantha	Rh6BG264300 Rh6CG263400 Rh6DG255400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 441
AclWI	GGATC	3 cut(s)	12, 32, 457
AcsI	RAATTY	1 cut(s)	397
AfaI	GTAC	2 cut(s)	167, 197
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	2 cut(s)	250, 403
AjnI	CCWGG	1 cut(s)	20
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	16, 76, 295, 311
AluI	AGCT	4 cut(s)	16, 76, 295, 311
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	3 cut(s)	12, 32, 457
ApoI	RAATTY	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	3 cut(s)	62, 170, 406
AxyI	CCTNAGG	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	237
BccI	CCATC	4 cut(s)	47, 155, 374, 380
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	2 cut(s)	98, 341
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	2 cut(s)	22, 269
BmrFI	CCNGG	2 cut(s)	22, 269
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	315
Bse21I	CCTNAGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	363
BseRI	GAGGAG	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	284
BsmAI	GTCTC	1 cut(s)	213
BsmBI	CGTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	284
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
BspACI	CCGC	2 cut(s)	11, 441
BspPI	GGATC	3 cut(s)	12, 32, 457
BspQI	GCTCTTC	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	50, 158, 286
Bst6I	CTCTTC	2 cut(s)	174, 285
BstBAI	YACGTR	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	296, 445
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	6 cut(s)	7, 27, 138, 151, 262, 452
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	20, 267
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	445
BtsCI	GGATG	1 cut(s)	363
Cac8I	GCNNGC	1 cut(s)	18
Csp6I	GTAC	2 cut(s)	166, 196
CviAII	CATG	2 cut(s)	235, 391
CviJI	RGCY	6 cut(s)	16, 76, 245, 295, 311, 322
CviKI_1	RGCY	6 cut(s)	16, 76, 245, 295, 311, 322
CviQI	GTAC	2 cut(s)	166, 196
DdeI	CTNAG	2 cut(s)	296, 445
DpnI	GATC	6 cut(s)	6, 26, 137, 150, 261, 451
DpnII	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	2 cut(s)	174, 285
EarI	CTCTTC	2 cut(s)	174, 285
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	1 cut(s)	315
Esp3I	CGTCTC	1 cut(s)	213
FaeI	CATG	2 cut(s)	238, 394
FaiI	YATR	2 cut(s)	236, 392
FalI	AAGNNNNNCTT	1 cut(s)	32
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	2 cut(s)	234, 390
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	98, 341
GluI	GCNGC	1 cut(s)	441
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	2 cut(s)	238, 394
HincII	GTYRAC	1 cut(s)	373
HindII	GTYRAC	1 cut(s)	373
HinfI	GANTC	3 cut(s)	83, 94, 102
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	3 cut(s)	62, 170, 406
Hpy166II	GTNNAC	2 cut(s)	172, 373
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	3 cut(s)	64, 113, 139
Hpy8I	GTNNAC	2 cut(s)	172, 373
HpyCH4III	ACNGT	3 cut(s)	50, 158, 286
HpyCH4IV	ACGT	3 cut(s)	168, 252, 375
HpyCH4V	TGCA	2 cut(s)	130, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	296, 445
HpySE526I	ACGT	3 cut(s)	168, 252, 375
Hsp92II	CATG	2 cut(s)	238, 394
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	1 cut(s)	13
LpnPI	CCDG	6 cut(s)	7, 28, 34, 126, 212, 281
MaeI	CTAG	2 cut(s)	98, 341
MaeII	ACGT	3 cut(s)	168, 252, 375
MalI	GATC	6 cut(s)	6, 26, 137, 150, 261, 451
MboI	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
MboII	GAAGA	6 cut(s)	19, 154, 191, 242, 302, 345
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	397
MnlI	CCTC	7 cut(s)	182, 205, 217, 220, 235, 337, 348
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	2 cut(s)	22, 269
MssI	GTTTAAAC	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	22
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	269
NdeII	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
NlaIII	CATG	2 cut(s)	238, 394
PciSI	GCTCTTC	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	83, 94, 102
PkrI	GCNGC	1 cut(s)	442
PmeI	GTTTAAAC	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	2 cut(s)	167, 197
RsaNI	GTAC	2 cut(s)	166, 196
RseI	CAYNNNNRTG	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	6 cut(s)	4, 24, 135, 148, 259, 449
ScrFI	CCNGG	2 cut(s)	22, 269
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	9 cut(s)	18, 78, 171, 255, 297, 302, 313, 378, 430
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	1 cut(s)	397
SsiI	CCGC	2 cut(s)	11, 441
SspMI	CTAG	2 cut(s)	98, 341
StyD4I	CCNGG	2 cut(s)	20, 267
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	50, 158, 286
TaiI	ACGT	3 cut(s)	171, 255, 378
TaqI	TCGA	3 cut(s)	39, 138, 177
TasI	AATT	1 cut(s)	397
TauI	GCSGC	1 cut(s)	443
TfiI	GAWTC	3 cut(s)	83, 94, 102
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TspDTI	ATGAA	3 cut(s)	75, 268, 437
XapI	RAATTY	1 cut(s)	397
XspI	CTAG	2 cut(s)	98, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.