MD10G1150400.v1.1

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012876
Physical Location & Seq
Reverse (-)
23725140 .. 23726375
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1150400.v1.1.491

Sequence Viewer

Length: 588 bp
ATGGACAAGGCGGAGCTACGGCGGGTTTTCCATATGTTTGATCAGAACGGGGACGGACGGATCACGAAGAAGGAGATGAGGGACTCGTTGGAGAAGCTGGGGATTTACATTCCGGACAAGGACTTGATCCAGATGATCGAAAAAATCGATGTGAATGGAGATGGGTTCGTGGACATGGATGAGTTCGGGGCGTTGTACCAGACGATCATGGACGAGAGGGACGAGGAGGAGGACATGAGGGAGGCGTTCAATGTGTTTGATCAGAACGGAGACGGGTTCATCACGGTGGACGAGCTGCGGTCGGTTTTGTCTTCCTTGGGGCTCAAGCAAGGGAAGACATTGGAGGATTGCACGATCATGATAAAGAAGGTTGATGTGGATGGTGATGGGAGGGTGAATTTCAAGGAGTTTAAGCAGATGATGAAAGGTGCTAACAGTATCAATCCGTACAAAAAAGAAGAAGAAGGAATCAAACGGAAGTTCAAACCTCAAGAGCAACAAGAGAAAAACAAAGAATCAAAATTCGACCACAACAACCCCACAGCTAGTATACACACTAAACAAACTGTTTCACTTGGGGTCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

196

Amino Acids

22.5

Weight (kDa)

4.95

Isoelectric Point (pI)

30.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 4 - 66 3.7e-14 EF-hand domain pair
EF-hand_1 PF00036 5 - 32 9.8e-07 EF hand domain
EF-hand_6 PF13405 5 - 34 5e-08 EF-hand domain
EF-hand_5 PF13202 6 - 27 9.2e-06 EF hand
EF-hand_7 PF13499 76 - 142 1e-17 EF-hand domain pair
EF-hand_6 PF13405 78 - 107 1.2e-09 EF-hand domain
EF-hand_1 PF00036 79 - 106 2.1e-08 EF hand domain
EF-hand_5 PF13202 80 - 103 1.4e-07 EF hand
EF-hand_8 PF13833 92 - 142 2.9e-10 EF-hand domain pair
EF-hand_1 PF00036 120 - 142 1e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07490 AT4G12860
fragaria_vesca FvH4_2g17620
malus_domestica MD05G1156600.v1.1 MD10G1150400.v1.1
prunus_persica Prupe.8G188800_v2.0.a1
pyrus_communis pycom05g14920 pycom10g12960
rosa_chinensis RchiOBHm_Chr6g0282601
rosa_laevigata RLG00000012882
rosa_multiflora Rmu_co8242345.1_g000002 Rmu_sc0000283.1_g000002 Rmu_sc0005697.1_g000002
rosa_roxburghii Rroxscaffold_7G00186230
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6BG264300 Rh6CG263400 Rh6DG255400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 550
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 3 cut(s) 11, 22, 298
AclWI GGATC 2 cut(s) 68, 121
AcsI RAATTY 2 cut(s) 397, 521
AfaI GTAC 2 cut(s) 197, 449
AgsI TTSAA 3 cut(s) 250, 403, 484
AluBI AGCT 4 cut(s) 16, 97, 295, 545
AluI AGCT 4 cut(s) 16, 97, 295, 545
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 68, 121
Aor13HI TCCGGA 1 cut(s) 112
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 2 cut(s) 397, 521
AsuHPI GGTGA 2 cut(s) 395, 406
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 2 cut(s) 303, 341
BbvI GCAGC 1 cut(s) 282
BccI CCATC 3 cut(s) 155, 374, 380
BceAI ACGGC 1 cut(s) 35
BclI TGATCA 2 cut(s) 40, 259
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 546
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
BpiI GAAGAC 2 cut(s) 303, 341
BpuEI CTTGAG 2 cut(s) 308, 474
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 2 cut(s) 184, 385
BseRI GAGGAG 2 cut(s) 239, 242
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 3 cut(s) 65, 95, 233
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 3 cut(s) 65, 95, 233
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BspACI CCGC 3 cut(s) 11, 22, 298
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 112
BspHI TCATGA 1 cut(s) 357
BspPI GGATC 2 cut(s) 68, 121
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BssNAI GTATAC 1 cut(s) 551
BssT1I CCWWGG 1 cut(s) 315
Bst1107I GTATAC 1 cut(s) 551
Bst4CI ACNGT 3 cut(s) 286, 437, 568
BstF5I GGATG 2 cut(s) 184, 385
BstKTI GATC 7 cut(s) 43, 63, 129, 138, 207, 262, 357
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BstMCI CGRYCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 303, 341
BstZ17I GTATAC 1 cut(s) 551
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 2 cut(s) 184, 385
CciI TCATGA 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 2 cut(s) 196, 448
CviAII CATG 4 cut(s) 175, 208, 235, 358
CviJI RGCY 5 cut(s) 16, 97, 295, 322, 545
CviKI_1 RGCY 5 cut(s) 16, 97, 295, 322, 545
CviQI GTAC 2 cut(s) 196, 448
DpnI GATC 7 cut(s) 42, 62, 128, 137, 206, 261, 356
DpnII GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
EciI GGCGGA 1 cut(s) 26
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 4 cut(s) 178, 211, 238, 361
FaiI YATR 7 cut(s) 33, 35, 176, 209, 236, 359, 551
FaqI GGGAC 3 cut(s) 65, 95, 233
FatI CATG 4 cut(s) 174, 207, 234, 357
FauI CCCGC 1 cut(s) 15
FauNDI CATATG 1 cut(s) 33
FbaI TGATCA 2 cut(s) 40, 259
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 191, 392
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 1 cut(s) 546
GluI GCNGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 101
HapII CCGG 1 cut(s) 113
Hin1II CATG 4 cut(s) 178, 211, 238, 361
HinfI GANTC 3 cut(s) 83, 468, 515
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 395, 406
Hpy166II GTNNAC 3 cut(s) 172, 289, 551
Hpy188I TCNGA 2 cut(s) 45, 264
Hpy188III TCNNGA 5 cut(s) 64, 113, 130, 358, 491
Hpy8I GTNNAC 3 cut(s) 172, 289, 551
HpyAV CCTTC 3 cut(s) 64, 361, 458
HpyCH4III ACNGT 3 cut(s) 286, 437, 568
HpyCH4V TGCA 1 cut(s) 351
Hsp92II CATG 4 cut(s) 178, 211, 238, 361
Kpn2I TCCGGA 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 40, 259
Kzo9I GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 83, 126, 143, 212
Lsp1109I GCAGC 1 cut(s) 282
MaeI CTAG 1 cut(s) 546
MalI GATC 7 cut(s) 42, 62, 128, 137, 206, 261, 356
MboI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
MboII GAAGA 5 cut(s) 79, 303, 346, 470, 473
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 397, 521
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 69
MroI TCCGGA 1 cut(s) 112
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 2 cut(s) 284, 356
MspI CCGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 33
NdeII GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
NlaIII CATG 4 cut(s) 178, 211, 238, 361
PagI TCATGA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 219
PfeI GAWTC 2 cut(s) 468, 515
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 97
RsaI GTAC 2 cut(s) 197, 449
RsaNI GTAC 2 cut(s) 196, 448
RseI CAYNNNNRTG 2 cut(s) 284, 356
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 324
SetI ASST 7 cut(s) 18, 99, 297, 372, 430, 490, 547
SmiMI CAYNNNNRTG 2 cut(s) 284, 356
SmlI CTYRAG 2 cut(s) 323, 489
SmoI CTYRAG 2 cut(s) 323, 489
Sse9I AATT 2 cut(s) 397, 521
SsiI CCGC 3 cut(s) 11, 22, 298
SspMI CTAG 1 cut(s) 546
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 3 cut(s) 286, 437, 568
TaqI TCGA 4 cut(s) 138, 147, 525, 582
TasI AATT 2 cut(s) 397, 521
TfiI GAWTC 2 cut(s) 468, 515
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 268, 437
TspGWI ACGGA 5 cut(s) 69, 73, 282, 435, 490
XapI RAATTY 2 cut(s) 397, 521
XmiI GTMKAC 1 cut(s) 550
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.