Prupe.8G188800_v2.0.a1

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0012876
Physical Location & Seq
Reverse (-)
18476552 .. 18478150
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G188800.1

Sequence Viewer

Length: 462 bp
ATGGACAACAGGGCAGAGGTAAAACGAGTTTTTCAGATGTTTGATCGAAACGGAGACGGGAAGATCACCAAGAAGGAGCTCAGGGACTCTTTAGAGAACCTGGGGATCTACATTCCTGACAAGGACTTGATCCAGATTATCGAAAAAATCGACGTGAACGGAGATGGGTTCGTGGATATCGACGAATTCGGGGCCTTGTACCAGACGATCATGGACGAGAGGGATGAAGAGGAGGACATGAGGGAAGCATTCAACGTGTTTGATCAAAATGGAGATGGGTTCATTACAGTGGATGAGTTGAGGTCAGTTTTGTCATCTTTGGGGCTGAAGCAGGGGAGGACATTGGAGGATTGCAAGATAATGATAAAGAAGGTGGATGTTGATGGAGATGGGAGGGTTAATTACAAGGAATTTAAGCAGATGATGAAAGGTGGTGGATTTGCTGCTTTAGGTTCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

154

Amino Acids

17.37

Weight (kDa)

4.53

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07490 AT4G12860
fragaria_vesca FvH4_2g17620
malus_domestica MD05G1156600.v1.1 MD10G1150400.v1.1
prunus_persica Prupe.8G188800_v2.0.a1
pyrus_communis pycom05g14920 pycom10g12960
rosa_chinensis RchiOBHm_Chr6g0282601
rosa_laevigata RLG00000012882
rosa_multiflora Rmu_co8242345.1_g000002 Rmu_sc0000283.1_g000002 Rmu_sc0005697.1_g000002
rosa_roxburghii Rroxscaffold_7G00186230
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6BG264300 Rh6CG263400 Rh6DG255400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 113, 124
AcsI RAATTY 2 cut(s) 185, 410
AcuI CTGAAG 1 cut(s) 347
AfaI GTAC 1 cut(s) 200
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 253, 456
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 48
AlwI GGATC 2 cut(s) 113, 124
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 185, 410
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 430
BccI CCATC 4 cut(s) 158, 269, 377, 383
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 48
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 101
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 193
BmrFI CCNGG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 229, 298, 382
BseMII CTCAG 1 cut(s) 94
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 81
BslFI GGGAC 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 48
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 248
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 81
Bsp143I GATC 6 cut(s) 43, 63, 105, 129, 207, 262
BspANI GGCC 1 cut(s) 194
BspCNI CTCAG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 193
BspPI GGATC 2 cut(s) 113, 124
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 6 cut(s) 43, 63, 105, 129, 207, 262
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 3 cut(s) 229, 298, 382
BstKTI GATC 6 cut(s) 46, 66, 108, 132, 210, 265
BstMAI GTCTC 1 cut(s) 48
BstMBI GATC 6 cut(s) 43, 63, 105, 129, 207, 262
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 194
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 229, 298, 382
BtsIMutI CAGTG 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 211, 238
CviJI RGCY 3 cut(s) 79, 194, 325
CviKI_1 RGCY 3 cut(s) 79, 194, 325
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 80
DpnI GATC 6 cut(s) 45, 65, 107, 131, 209, 264
DpnII GATC 6 cut(s) 43, 63, 105, 129, 207, 262
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 178
Eco53kI GAGCTC 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 347
EcoICRI GAGCTC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 2 cut(s) 214, 241
FaiI YATR 2 cut(s) 212, 239
FaqI GGGAC 1 cut(s) 98
FatI CATG 2 cut(s) 210, 237
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 3 cut(s) 236, 305, 389
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 444
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 2 cut(s) 214, 241
HinfI GANTC 1 cut(s) 86
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 116, 133
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 2 cut(s) 155, 185
HpyAV CCTTC 2 cut(s) 67, 364
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 153, 255
HpyCH4V TGCA 1 cut(s) 354
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 153, 255
Hsp92II CATG 2 cut(s) 214, 241
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 6 cut(s) 43, 63, 105, 129, 207, 262
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 7 cut(s) 67, 86, 113, 129, 146, 215, 317
Lsp1109I GCAGC 1 cut(s) 430
MaeII ACGT 2 cut(s) 153, 255
MalI GATC 6 cut(s) 45, 65, 107, 131, 209, 264
MboI GATC 6 cut(s) 43, 63, 105, 129, 207, 262
MboII GAAGA 2 cut(s) 73, 239
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 3 cut(s) 185, 400, 410
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 9 cut(s) 10, 213, 223, 226, 234, 294, 330, 340, 387
MseI TTAA 2 cut(s) 399, 414
MslI CAYNNNNRTG 1 cut(s) 287
MspR9I CCNGG 1 cut(s) 101
Mva1269I GAATGC 1 cut(s) 248
MvaI CCWGG 1 cut(s) 101
NdeII GATC 6 cut(s) 43, 63, 105, 129, 207, 262
NlaIII CATG 2 cut(s) 214, 241
NlaIV GGNNCC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 177
PctI GAATGC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 193
PspPI GGNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
RseI CAYNNNNRTG 1 cut(s) 287
SacI GAGCTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 399, 414
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 6 cut(s) 43, 63, 105, 129, 207, 262
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 81
SetI ASST 9 cut(s) 21, 81, 102, 156, 258, 305, 375, 433, 454
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 3 cut(s) 185, 400, 410
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 156, 258
TaqI TCGA 4 cut(s) 46, 141, 150, 180
TasI AATT 3 cut(s) 185, 400, 410
Tru1I TTAA 2 cut(s) 399, 414
Tru9I TTAA 2 cut(s) 399, 414
TscAI CASTG 1 cut(s) 294
TseI GCWGC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 240, 271, 440
TspGWI ACGGA 2 cut(s) 66, 174
TspRI CASTG 1 cut(s) 294
XapI RAATTY 2 cut(s) 185, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.