AT3G07950

Eukaryotic integral membrane protein (DUF1751)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015038
Physical Location & Seq
Forward (+)
2531773 .. 2534545
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07950.1

Sequence Viewer

Length: 915 bp
ATGAGTTCTCCGGGAACGAGTATGTTCACCAATTTCACTAAGCTCTGCAAAGGACTTGCCCTGGTACTTGTGGTGGGACACCTCGTGGTTCAGTTCATTCCCGCTACCGTCCCATACCTTGCTCTGATTCCGGCGAGGACTATTCCTTTTGCCTGGAATCTGATAACAAGCGGCTATTTTGAACTCTCAGTATATGGGGTTGTCTTCAGCACCGTTTCTCTCCTTTTTATGGGAAAGTTCCTGGAACCTGTCTGGGGTTCCACGGAGTTCCTTAAGTTCATCTTTGTGGTGAACTTCCTTACGTATCTCTGTGTTTTCGTTACAGCCATTGCCTTATACTACATAACGAGGCTGGAAGTTTACCTATATATGCCCTTTGCTGGTTTTCATGGTGTCTTGGCAGGCCTTCTTGTAGGGATAAAGCAGATAATACCTGACCAGGAGATATTGCTGTTAAAGATAAAAGCAAAGTGGTTGCCCTCAATTATGCTAATTTTGTCAATAGCCTCAAGCTTCTTCACACTAGATTCAGCAGCATATCTTCCCACTTTGATATTTGGTACATATATGGGCTGGTTATACCTCAGGTACCTACAGAGGAGACCAGAAACAAAGCTCAGAGGTGATCCAAGTGATGACTTTGCCTTCTCTACTTTCTTTCCTGAACTTCTCAGGCCAGTAATTGACCCCATTGCCTTAATCTTTCACCGGATGCTTTGTGGAAGATCAAATGCCACCAGTGAAGACCATGATTATTCTACCAGTGGTGCACCATTGCCAGGTTCTGATTCTGCTGAAGCATCCAGGAGGAGAGAAAGAGGGGCAAGAGCTCTAGAGGAGAGACTAGGAACGGAAAGATTGGTTCCTGCAAGGAACAAAGATGAATTGCAGAGTGATGGTTTAGATAACGTATAA

Protein Analysis

304

Amino Acids

34.08

Weight (kDa)

7.69

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 44 - 142 2.5e-31 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 588
AccB1I GGYRCC 1 cut(s) 588
AciI CCGC 2 cut(s) 102, 171
AclWI GGATC 1 cut(s) 620
AcuI CTGAAG 2 cut(s) 190, 816
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 3 cut(s) 66, 562, 590
AfiI CCNNNNNNNGG 4 cut(s) 229, 254, 380, 779
AflII CTTAAG 1 cut(s) 272
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 6 cut(s) 60, 152, 240, 438, 778, 803
AluBI AGCT 4 cut(s) 43, 513, 616, 830
AluI AGCT 4 cut(s) 43, 513, 616, 830
Alw21I GWGCWC 2 cut(s) 772, 832
Alw26I GTCTC 2 cut(s) 595, 835
Alw44I GTGCAC 1 cut(s) 768
AlwI GGATC 1 cut(s) 620
AlwNI CAGNNNCTG 1 cut(s) 785
AoxI GGCC 2 cut(s) 403, 674
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 1 cut(s) 533
Asp718I GGTACC 1 cut(s) 588
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 4 cut(s) 19, 301, 635, 698
AxyI CCTNAGG 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 832
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 2 cut(s) 196, 750
Bbv12I GWGCWC 2 cut(s) 772, 832
BbvI GCAGC 1 cut(s) 545
BccI CCATC 1 cut(s) 890
BciT130I CCWGG 6 cut(s) 62, 154, 242, 440, 780, 805
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 595, 835
BfaI CTAG 3 cut(s) 524, 833, 845
BfmI CTRYAG 1 cut(s) 593
BfrI CTTAAG 1 cut(s) 272
BisI GCNGC 2 cut(s) 172, 534
BlsI GCNGC 2 cut(s) 173, 535
Bme1390I CCNGG 7 cut(s) 12, 62, 154, 242, 440, 780, 805
BmiI GGNNCC 4 cut(s) 246, 259, 590, 864
BmrFI CCNGG 7 cut(s) 12, 62, 154, 242, 440, 780, 805
BmsI GCATC 2 cut(s) 702, 809
BpiI GAAGAC 2 cut(s) 196, 750
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 12
BsaAI YACGTR 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 595
BsaJI CCNNGG 2 cut(s) 60, 261
BsaWI WCCGGW 1 cut(s) 708
Bsc4I CCNNNNNNNGG 4 cut(s) 229, 254, 380, 779
Bse1I ACTGG 3 cut(s) 677, 738, 762
Bse21I CCTNAGG 1 cut(s) 584
Bse3DI GCAATG 3 cut(s) 327, 690, 773
BseBI CCWGG 6 cut(s) 62, 154, 242, 440, 780, 805
BseDI CCNNGG 2 cut(s) 60, 261
BseGI GGATG 2 cut(s) 717, 800
BseLI CCNNNNNNNGG 4 cut(s) 229, 254, 380, 779
BseMI GCAATG 3 cut(s) 327, 690, 773
BseMII CTCAG 4 cut(s) 201, 598, 631, 685
BseNI ACTGG 3 cut(s) 677, 738, 762
BseRI GAGGAG 3 cut(s) 613, 823, 851
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 1 cut(s) 545
BshFI GGCC 2 cut(s) 405, 676
BshNI GGYRCC 1 cut(s) 588
BsiHKAI GWGCWC 2 cut(s) 772, 832
BsiSI CCGG 3 cut(s) 11, 131, 709
BslFI GGGAC 2 cut(s) 90, 95
BslI CCNNNNNNNGG 4 cut(s) 229, 254, 380, 779
BsmAI GTCTC 2 cut(s) 595, 835
BsmFI GGGAC 2 cut(s) 90, 95
BsnI GGCC 2 cut(s) 405, 676
Bso31I GGTCTC 1 cut(s) 595
Bsp1286I GDGCHC 2 cut(s) 772, 832
Bsp143I GATC 2 cut(s) 625, 725
BspACI CCGC 2 cut(s) 102, 171
BspANI GGCC 2 cut(s) 405, 676
BspCNI CTCAG 4 cut(s) 200, 597, 630, 684
BspLI GGNNCC 4 cut(s) 246, 259, 590, 864
BspPI GGATC 1 cut(s) 620
BspT107I GGYRCC 1 cut(s) 588
BspTI CTTAAG 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 595
BsrDI GCAATG 3 cut(s) 327, 690, 773
BsrI ACTGG 3 cut(s) 677, 738, 762
BssECI CCNNGG 2 cut(s) 60, 261
BssMI GATC 2 cut(s) 625, 725
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 6 cut(s) 62, 154, 242, 440, 780, 805
Bst4CI ACNGT 2 cut(s) 109, 214
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 403
BstDEI CTNAG 5 cut(s) 39, 187, 584, 617, 671
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 717, 800
BstKTI GATC 2 cut(s) 628, 728
BstMAI GTCTC 2 cut(s) 595, 835
BstMBI GATC 2 cut(s) 625, 725
BstNI CCWGG 6 cut(s) 62, 154, 242, 440, 780, 805
BstSCI CCNGG 7 cut(s) 10, 60, 152, 240, 438, 778, 803
BstSFI CTRYAG 1 cut(s) 593
BstSLI GKGCMC 1 cut(s) 772
BstSNI TACGTA 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 545
BstV2I GAAGAC 2 cut(s) 196, 750
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 2 cut(s) 405, 676
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 717, 800
BtsIMutI CAGTG 2 cut(s) 745, 769
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 785
Csp6I GTAC 3 cut(s) 65, 561, 589
CviAII CATG 2 cut(s) 389, 749
CviQI GTAC 3 cut(s) 65, 561, 589
DdeI CTNAG 5 cut(s) 39, 187, 584, 617, 671
DpnI GATC 2 cut(s) 627, 727
DpnII GATC 2 cut(s) 625, 725
DraIII CACNNNGTG 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 830
Eco105I TACGTA 1 cut(s) 303
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 832
Eco31I GGTCTC 1 cut(s) 595
Eco53kI GAGCTC 1 cut(s) 830
Eco57I CTGAAG 2 cut(s) 190, 816
Eco81I CCTNAGG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 830
EcoRII CCWGG 6 cut(s) 60, 152, 240, 438, 778, 803
EcoT38I GRGCYC 1 cut(s) 832
FaeI CATG 2 cut(s) 392, 752
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FaqI GGGAC 2 cut(s) 90, 95
FatI CATG 2 cut(s) 388, 748
FauI CCCGC 1 cut(s) 109
Fnu4HI GCNGC 2 cut(s) 172, 534
FokI GGATG 2 cut(s) 724, 787
FriOI GRGCYC 1 cut(s) 832
Fsp4HI GCNGC 2 cut(s) 172, 534
FspBI CTAG 3 cut(s) 524, 833, 845
GluI GCNGC 2 cut(s) 172, 534
HaeIII GGCC 2 cut(s) 405, 676
HapII CCGG 3 cut(s) 11, 131, 709
Hin1II CATG 2 cut(s) 392, 752
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 4 cut(s) 127, 157, 527, 788
HpaII CCGG 3 cut(s) 11, 131, 709
HphI GGTGA 4 cut(s) 19, 301, 635, 698
Hpy166II GTNNAC 4 cut(s) 27, 292, 361, 770
Hpy188I TCNGA 4 cut(s) 126, 162, 620, 787
Hpy188III TCNNGA 2 cut(s) 662, 833
Hpy8I GTNNAC 4 cut(s) 27, 292, 361, 770
HpyAV CCTTC 2 cut(s) 416, 655
HpyCH4III ACNGT 2 cut(s) 109, 214
HpyCH4IV ACGT 2 cut(s) 302, 909
HpyCH4V TGCA 4 cut(s) 48, 770, 869, 889
HpyF3I CTNAG 5 cut(s) 39, 187, 584, 617, 671
HpySE526I ACGT 2 cut(s) 302, 909
Hsp92II CATG 2 cut(s) 392, 752
KpnI GGTACC 1 cut(s) 592
Kzo9I GATC 2 cut(s) 625, 725
Lsp1109I GCAGC 1 cut(s) 545
LweI GCATC 2 cut(s) 702, 809
MaeI CTAG 3 cut(s) 524, 833, 845
MaeII ACGT 2 cut(s) 302, 909
MaeIII GTNAC 1 cut(s) 319
MalI GATC 2 cut(s) 627, 727
MboI GATC 2 cut(s) 625, 725
MboII GAAGA 5 cut(s) 196, 508, 533, 735, 755
MhlI GDGCHC 2 cut(s) 772, 832
MluCI AATT 5 cut(s) 31, 483, 492, 681, 884
MseI TTAA 3 cut(s) 273, 455, 698
MslI CAYNNNNRTG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 3 cut(s) 11, 131, 709
MspR9I CCNGG 7 cut(s) 12, 62, 154, 242, 440, 780, 805
MvaI CCWGG 6 cut(s) 62, 154, 242, 440, 780, 805
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 625, 725
NlaIII CATG 2 cut(s) 392, 752
NlaIV GGNNCC 4 cut(s) 246, 259, 590, 864
PceI AGGCCT 1 cut(s) 405
PfeI GAWTC 4 cut(s) 127, 157, 527, 788
PfoI TCCNGGA 3 cut(s) 10, 240, 803
PkrI GCNGC 2 cut(s) 173, 535
Ppu21I YACGTR 1 cut(s) 303
Psp124BI GAGCTC 1 cut(s) 832
Psp6I CCWGG 6 cut(s) 60, 152, 240, 438, 778, 803
PspGI CCWGG 6 cut(s) 60, 152, 240, 438, 778, 803
PspN4I GGNNCC 4 cut(s) 246, 259, 590, 864
PstNI CAGNNNCTG 1 cut(s) 785
RsaI GTAC 3 cut(s) 66, 562, 590
RsaNI GTAC 3 cut(s) 65, 561, 589
RseI CAYNNNNRTG 1 cut(s) 284
SacI GAGCTC 1 cut(s) 832
SaqAI TTAA 3 cut(s) 273, 455, 698
SatI GCNGC 2 cut(s) 172, 534
Sau3AI GATC 2 cut(s) 625, 725
ScrFI CCNGG 7 cut(s) 12, 62, 154, 242, 440, 780, 805
SduI GDGCHC 2 cut(s) 772, 832
SfaNI GCATC 2 cut(s) 702, 809
SfcI CTRYAG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 272, 508
SmoI CTYRAG 2 cut(s) 272, 508
SnaBI TACGTA 1 cut(s) 303
Sse9I AATT 5 cut(s) 31, 483, 492, 681, 884
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 2 cut(s) 102, 171
SspMI CTAG 3 cut(s) 524, 833, 845
SstI GAGCTC 1 cut(s) 832
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 7 cut(s) 10, 60, 152, 240, 438, 778, 803
TaaI ACNGT 2 cut(s) 109, 214
TaiI ACGT 2 cut(s) 305, 912
TasI AATT 5 cut(s) 31, 483, 492, 681, 884
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 4 cut(s) 127, 157, 527, 788
Tru1I TTAA 3 cut(s) 273, 455, 698
Tru9I TTAA 3 cut(s) 273, 455, 698
TscAI CASTG 2 cut(s) 745, 769
TseI GCWGC 1 cut(s) 533
TspDTI ATGAA 4 cut(s) 85, 268, 377, 897
TspGWI ACGGA 2 cut(s) 278, 866
TspRI CASTG 2 cut(s) 745, 769
Vha464I CTTAAG 1 cut(s) 272
VneI GTGCAC 1 cut(s) 768
XbaI TCTAGA 1 cut(s) 832
XspI CTAG 3 cut(s) 524, 833, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.