Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015038

Physical Location & Seq

Genomic Coordinates Forward (+)

14130869 .. 14133566

Gene Structure 2698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g13740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGCACTCCATCACTCTCAGGGAGCGCAGGTGCGTTCTCTGGATTCACACGGCTATGCAAGGGCTTGTCGGTGGTGCTTATTGGAGGCCACATTGTGGTTCAGCTTCTCCCCCATGCCGTCGATTACCTGGCTCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCATAACATCCGGTTACATTGAACAATCAGTATATGGGGTTTTTATCAGCACTATTGGTCTTCTTTTAATTGGGAAGCTGCTTGAACCTGTGTGGGGTTCTAGGGAGTTCTTGAAGTTCATCTTTGTAGTTAACTTCTTAACTTCCATATGCACTTTCGTCACTGCTATTGCTATGTACTACATTACAATGACGGAATTTTACCTTTATATGCCTGTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTGTTGGTTGGCATCAAGCAAATCATCCCCGACCAGGAGTTGCCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTATCTCGCTATTGCTGTCCATTGCCATAAGCTTCTGGACAGAAAAGTCAGCAACATATCTTCCATTCATAATATTTGGAACTTATACGAGCTGGATTTATCTAAGATTCTGGCAGCGGAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAACTTTTGAGACCAGTCATTGATCCTGTTGCATCTATATTCCATCGGATGCTCTGTGGAAGATCTGAAGCTTCCAATGAATCCCAAGGTTATACCCTGGGCGGTTCCTCATTGCCTGGATCTGACCCCATTGAAGCATCTAGAAGAAGAGAAAGAGGTGCTCGAGCACTCGAGGAAAGATTGGCAGCTGAGAGGTTGGCTGCAGCACACGGTACAGAAGAGTCTGGAAGCGATGCCGCAGAGAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1751

Protein Analysis

309

Amino Acids

34.02

Weight (kDa)

6.97

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07950
fragaria_vesca	FvH4_7g19770
malus_domestica	MD07G1176100.v1.1
prunus_persica	Prupe.8G142500_v2.0.a1
pyrus_communis	pycom01g13740 pycom07g17030
rosa_chinensis	RchiOBHm_Chr1g0363681
rosa_laevigata	RLG00000027552
rosa_multiflora	Rmu_sc0000548.1_g000013
rosa_roxburghii	Rroxscaffold_4G00293000
rosa_rugosa	Rorug01G0308500
rosa_samantha	Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana	Rw1G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
AasI	GACNNNNNNGTC	1 cut(s)	538
Acc36I	ACCTGC	1 cut(s)	20
AccB7I	CCANNNNNTGG	1 cut(s)	97
AciI	CCGC	4 cut(s)	144, 610, 777, 912
AclWI	GGATC	3 cut(s)	632, 692, 802
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	762
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	350, 889
AfiI	CCNNNNNNNGG	4 cut(s)	97, 266, 392, 451
AgsI	TTSAA	5 cut(s)	194, 257, 286, 469, 809
AjnI	CCWGG	5 cut(s)	129, 146, 450, 771, 790
AluBI	AGCT	7 cut(s)	106, 250, 479, 525, 585, 746, 863
AluI	AGCT	7 cut(s)	106, 250, 479, 525, 585, 746, 863
Alw21I	GWGCWC	3 cut(s)	8, 838, 844
Alw26I	GTCTC	1 cut(s)	679
AlwI	GGATC	3 cut(s)	632, 692, 802
Ama87I	CYCGRG	2 cut(s)	837, 845
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	5 cut(s)	250, 607, 860, 875, 878
ApoI	RAATTY	1 cut(s)	368
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	2 cut(s)	837, 845
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	3 cut(s)	8, 838, 844
BbvI	GCAGC	5 cut(s)	237, 619, 862, 872, 890
BccI	CCATC	3 cut(s)	19, 499, 726
BceAI	ACGGC	2 cut(s)	68, 104
BciT130I	CCWGG	5 cut(s)	131, 148, 452, 773, 792
BcoDI	GTCTC	1 cut(s)	679
BfaI	CTAG	2 cut(s)	273, 816
BfmI	CTRYAG	1 cut(s)	876
BfuAI	ACCTGC	1 cut(s)	20
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	6 cut(s)	251, 608, 861, 876, 879, 912
BlsI	GCNGC	6 cut(s)	252, 609, 862, 877, 880, 913
Bme1390I	CCNGG	5 cut(s)	131, 148, 452, 773, 792
BmeT110I	CYCGRG	2 cut(s)	837, 845
BmiI	GGNNCC	2 cut(s)	170, 781
BmrFI	CCNGG	5 cut(s)	131, 148, 452, 773, 792
BmsI	GCATC	5 cut(s)	438, 714, 716, 821, 898
BpiI	GAAGAC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	614
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	4 cut(s)	400, 760, 771, 772
BsaWI	WCCGGW	1 cut(s)	182
BsaXI	ACNNNNNCTCC	2 cut(s)	16, 46
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 266, 392, 451
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	513, 785
BseBI	CCWGG	5 cut(s)	131, 148, 452, 773, 792
BseDI	CCNNGG	4 cut(s)	400, 760, 771, 772
BseGI	GGATG	3 cut(s)	179, 441, 729
BseLI	CCNNNNNNNGG	4 cut(s)	97, 266, 392, 451
BseMI	GCAATG	2 cut(s)	513, 785
BseMII	CTCAG	2 cut(s)	33, 855
BseNI	ACTGG	1 cut(s)	689
BseXI	GCAGC	5 cut(s)	237, 619, 862, 872, 890
BshFI	GGCC	1 cut(s)	90
BsiHKAI	GWGCWC	3 cut(s)	8, 838, 844
BsiHKCI	CYCGRG	2 cut(s)	837, 845
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	4 cut(s)	97, 266, 392, 451
BsmAI	GTCTC	1 cut(s)	679
BsnI	GGCC	1 cut(s)	90
Bso31I	GGTCTC	1 cut(s)	679
BsoBI	CYCGRG	2 cut(s)	837, 845
Bsp1286I	GDGCHC	3 cut(s)	8, 838, 844
Bsp143I	GATC	4 cut(s)	637, 697, 737, 794
BspACI	CCGC	4 cut(s)	144, 610, 777, 912
BspANI	GGCC	1 cut(s)	90
BspCNI	CTCAG	2 cut(s)	32, 856
BspLI	GGNNCC	2 cut(s)	170, 781
BspMAI	CTGCAG	1 cut(s)	880
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	3 cut(s)	632, 692, 802
BspTNI	GGTCTC	1 cut(s)	679
BsrDI	GCAATG	2 cut(s)	513, 785
BsrI	ACTGG	1 cut(s)	689
BssECI	CCNNGG	4 cut(s)	400, 760, 771, 772
BssMI	GATC	4 cut(s)	637, 697, 737, 794
BssT1I	CCWWGG	1 cut(s)	760
Bst2UI	CCWGG	5 cut(s)	131, 148, 452, 773, 792
Bst4CI	ACNGT	1 cut(s)	887
Bst6I	CTCTTC	2 cut(s)	817, 888
BstDEI	CTNAG	4 cut(s)	19, 480, 596, 864
BstDSI	CCRYGG	1 cut(s)	400
BstEII	GGTNACC	1 cut(s)	486
BstF5I	GGATG	3 cut(s)	179, 441, 729
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	4 cut(s)	640, 700, 740, 797
BstMAI	GTCTC	1 cut(s)	679
BstMBI	GATC	4 cut(s)	637, 697, 737, 794
BstNI	CCWGG	5 cut(s)	131, 148, 452, 773, 792
BstPI	GGTNACC	1 cut(s)	486
BstSCI	CCNGG	5 cut(s)	129, 146, 450, 771, 790
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	5 cut(s)	237, 619, 862, 872, 890
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	2 cut(s)	737, 794
BstYI	RGATCY	2 cut(s)	737, 794
BsuRI	GGCC	1 cut(s)	90
BtgI	CCRYGG	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	921
BtsCI	GGATG	3 cut(s)	179, 441, 729
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	20
CfoI	GCGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	349, 888
CviAII	CATG	1 cut(s)	116
CviQI	GTAC	2 cut(s)	349, 888
DdeI	CTNAG	4 cut(s)	19, 480, 596, 864
DpnI	GATC	4 cut(s)	639, 699, 739, 796
DpnII	GATC	4 cut(s)	637, 697, 737, 794
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	538
DseDI	GACNNNNNNGTC	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	817, 888
EarI	CTCTTC	2 cut(s)	817, 888
Eco130I	CCWWGG	1 cut(s)	760
Eco31I	GGTCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	762
Eco88I	CYCGRG	2 cut(s)	837, 845
Eco91I	GGTNACC	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	486
EcoRII	CCWGG	5 cut(s)	129, 146, 450, 771, 790
EcoT14I	CCWWGG	1 cut(s)	760
ErhI	CCWWGG	1 cut(s)	760
FaeI	CATG	1 cut(s)	119
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FatI	CATG	1 cut(s)	115
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	6 cut(s)	251, 608, 861, 876, 879, 912
FokI	GGATG	3 cut(s)	166, 428, 736
Fsp4HI	GCNGC	6 cut(s)	251, 608, 861, 876, 879, 912
FspBI	CTAG	2 cut(s)	273, 816
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	6 cut(s)	251, 608, 861, 876, 879, 912
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	523, 744
HinfI	GANTC	6 cut(s)	45, 154, 405, 600, 755, 896
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	3 cut(s)	723, 742, 799
Hpy188III	TCNNGA	6 cut(s)	42, 166, 283, 529, 816, 900
Hpy8I	GTNNAC	1 cut(s)	304
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	1 cut(s)	887
HpyCH4V	TGCA	5 cut(s)	60, 324, 656, 707, 878
HpyF3I	CTNAG	4 cut(s)	19, 480, 596, 864
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	637, 697, 737, 794
LmnI	GCTCC	1 cut(s)	24
Lsp1109I	GCAGC	5 cut(s)	237, 619, 862, 872, 890
LweI	GCATC	5 cut(s)	438, 714, 716, 821, 898
MaeI	CTAG	2 cut(s)	273, 816
MaeIII	GTNAC	3 cut(s)	185, 331, 486
MalI	GATC	4 cut(s)	639, 699, 739, 796
MboI	GATC	4 cut(s)	637, 697, 737, 794
MboII	GAAGA	8 cut(s)	224, 545, 659, 661, 747, 831, 834, 905
MflI	RGATCY	2 cut(s)	737, 794
MhlI	GDGCHC	3 cut(s)	8, 838, 844
MluCI	AATT	2 cut(s)	240, 368
MlyI	GAGTC	2 cut(s)	414, 905
MnlI	CCTC	6 cut(s)	80, 182, 793, 824, 841, 861
MseI	TTAA	4 cut(s)	239, 303, 311, 925
MslI	CAYNNNNRTG	2 cut(s)	55, 359
MspA1I	CMGCKG	2 cut(s)	610, 863
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	5 cut(s)	131, 148, 452, 773, 792
MvaI	CCWGG	5 cut(s)	131, 148, 452, 773, 792
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	4 cut(s)	637, 697, 737, 794
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	2 cut(s)	170, 781
NmuCI	GTSAC	1 cut(s)	331
PaeR7I	CTCGAG	2 cut(s)	837, 845
PaqCI	CACCTGC	1 cut(s)	20
PasI	CCCWGGG	1 cut(s)	772
PfeI	GAWTC	4 cut(s)	45, 154, 600, 755
PflMI	CCANNNNNTGG	1 cut(s)	97
PkrI	GCNGC	6 cut(s)	252, 609, 862, 877, 880, 913
PleI	GAGTC	2 cut(s)	413, 904
PpsI	GAGTC	2 cut(s)	413, 904
Psp6I	CCWGG	5 cut(s)	129, 146, 450, 771, 790
PspEI	GGTNACC	1 cut(s)	486
PspGI	CCWGG	5 cut(s)	129, 146, 450, 771, 790
PspN4I	GGNNCC	2 cut(s)	170, 781
PspXI	VCTCGAGB	2 cut(s)	837, 845
PstI	CTGCAG	1 cut(s)	880
PsuI	RGATCY	2 cut(s)	737, 794
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	350, 889
RsaNI	GTAC	2 cut(s)	349, 888
RseI	CAYNNNNRTG	2 cut(s)	55, 359
SaqAI	TTAA	4 cut(s)	239, 303, 311, 925
SatI	GCNGC	6 cut(s)	251, 608, 861, 876, 879, 912
Sau3AI	GATC	4 cut(s)	637, 697, 737, 794
SchI	GAGTC	2 cut(s)	414, 905
ScrFI	CCNGG	5 cut(s)	131, 148, 452, 773, 792
SduI	GDGCHC	3 cut(s)	8, 838, 844
SfaNI	GCATC	5 cut(s)	438, 714, 716, 821, 898
SfcI	CTRYAG	1 cut(s)	876
Sfr274I	CTCGAG	2 cut(s)	837, 845
SlaI	CTCGAG	2 cut(s)	837, 845
SmiMI	CAYNNNNRTG	2 cut(s)	55, 359
SmlI	CTYRAG	3 cut(s)	629, 837, 845
SmoI	CTYRAG	3 cut(s)	629, 837, 845
Sse9I	AATT	2 cut(s)	240, 368
SsiI	CCGC	4 cut(s)	144, 610, 777, 912
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	273, 816
StyD4I	CCNGG	5 cut(s)	129, 146, 450, 771, 790
StyI	CCWWGG	1 cut(s)	760
TaaI	ACNGT	1 cut(s)	887
TaqI	TCGA	3 cut(s)	123, 838, 846
TasI	AATT	2 cut(s)	240, 368
TatI	WGTACW	1 cut(s)	348
TauI	GCSGC	1 cut(s)	914
TfiI	GAWTC	4 cut(s)	45, 154, 600, 755
Tru1I	TTAA	4 cut(s)	239, 303, 311, 925
Tru9I	TTAA	4 cut(s)	239, 303, 311, 925
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	5 cut(s)	250, 607, 860, 875, 878
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	280, 550, 768
TspGWI	ACGGA	2 cut(s)	380, 417
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	97
XapI	RAATTY	1 cut(s)	368
XbaI	TCTAGA	1 cut(s)	815
XhoI	CTCGAG	2 cut(s)	837, 845
XspI	CTAG	2 cut(s)	273, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.