pycom07g17030

Transmembrane protein 115-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015038
Physical Location & Seq
Forward (+)
19562082 .. 19564735
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17030.1

Sequence Viewer

Length: 927 bp
ATGAGCACTCCATCACTCTCAGGGAGCGCGGGTGCGTTCTCTGGGTTCACTCGGCTATGCAAGGGCTTGGCGGTGGTTCTTATTGGAGGCCACATTGTGGTTCAGCTTCTCCCTCACGCCGTTGATTACCTCGCTCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCATTACATCCGGTTACATTGAACAATCAATATATGGGGTTGTTATCAGCACTCTTGGTCTTCTTTTTATAGGGAAGCTGCTTGAACCTGTGTGGGGTTCTAGGGAGTTCTTCAAGTTCATCTTTGTAGTTAACTTCCTAACTTCCATATGCACTTTCGTCACTGCTATCGCTATGTATTACATTACAATGACGGAATTTTACCTATATATGCCTGTTTCTGGCTTCCACGGAGTCCTTTCAGGTTTCTTAGTTGGCATCAAGCAAATCATCCCCGACCAGGAGTTGCCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTATCTTGCTATTGTTGTCCATTGCCATAAGCTTCTGGACAGAAAAGTCAGCAACACATCTTCCAATCTTAATATTTGGAACCTATACAAGTTGGATTTACCTAAGATACTGGCAGAGTAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTTTTGAGGCCAGTCATCGATCCTGTTGCATCTATATTCCATCGGATGCTCTGTGGAAGATCTGAAGCTTCCAATGAATCCCAAGGTCACACCCTGGGCAGTACGTCATTGCCTGGATCTGACCCCATTGAAGCATCAAGAAGAAGAGAAAGAGGTGCTCGAGCTCTCGAAGAAAGATTGGCAGCTGAGAGGCTGGCTGCAGCGCACGGTACAGAAGAGTCAGGAAGAGATGCCGCGGAGAATGTTTAA

Protein Analysis

309

Amino Acids

34.11

Weight (kDa)

7.06

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 48 - 146 1.1e-31 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 538
AccB7I CCANNNNNTGG 1 cut(s) 97
AccII CGCG 2 cut(s) 29, 914
AciI CCGC 5 cut(s) 29, 71, 144, 912, 914
AclWI GGATC 3 cut(s) 632, 692, 802
AcsI RAATTY 2 cut(s) 368, 677
AcuI CTGAAG 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 97
AfaI GTAC 2 cut(s) 781, 889
AfiI CCNNNNNNNGG 4 cut(s) 97, 266, 392, 451
AgsI TTSAA 5 cut(s) 194, 257, 286, 469, 809
AjnI CCWGG 4 cut(s) 146, 450, 771, 790
AluBI AGCT 7 cut(s) 106, 250, 479, 525, 746, 842, 863
AluI AGCT 7 cut(s) 106, 250, 479, 525, 746, 842, 863
Alw21I GWGCWC 3 cut(s) 8, 838, 844
AlwI GGATC 3 cut(s) 632, 692, 802
Ama87I CYCGRG 1 cut(s) 837
AoxI GGCC 2 cut(s) 88, 686
ApeKI GCWGC 4 cut(s) 250, 860, 875, 878
ApoI RAATTY 2 cut(s) 368, 677
AspLEI GCGC 2 cut(s) 29, 883
AsuHPI GGTGA 1 cut(s) 647
AvaI CYCGRG 1 cut(s) 837
BanII GRGCYC 1 cut(s) 844
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 3 cut(s) 8, 838, 844
BbvI GCAGC 4 cut(s) 237, 862, 872, 890
BccI CCATC 3 cut(s) 19, 499, 726
BceAI ACGGC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 686, 720
BciT130I CCWGG 4 cut(s) 148, 452, 773, 792
BfaI CTAG 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 876
BglII AGATCT 1 cut(s) 737
BisI GCNGC 5 cut(s) 251, 861, 876, 879, 912
BlsI GCNGC 5 cut(s) 252, 862, 877, 880, 913
Bme1390I CCNGG 4 cut(s) 148, 452, 773, 792
BmeT110I CYCGRG 1 cut(s) 837
BmiI GGNNCC 2 cut(s) 170, 574
BmrFI CCNGG 4 cut(s) 148, 452, 773, 792
BmsI GCATC 5 cut(s) 438, 714, 716, 821, 898
BpiI GAAGAC 1 cut(s) 224
BpuEI CTTGAG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 696
BsaJI CCNNGG 5 cut(s) 400, 760, 771, 772, 912
BsaWI WCCGGW 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 4 cut(s) 97, 266, 392, 451
Bse1I ACTGG 2 cut(s) 608, 689
Bse3DI GCAATG 2 cut(s) 513, 785
BseBI CCWGG 4 cut(s) 148, 452, 773, 792
BseCI ATCGAT 1 cut(s) 696
BseDI CCNNGG 5 cut(s) 400, 760, 771, 772, 912
BseGI GGATG 3 cut(s) 179, 441, 729
BseLI CCNNNNNNNGG 4 cut(s) 97, 266, 392, 451
BseMI GCAATG 2 cut(s) 513, 785
BseMII CTCAG 2 cut(s) 33, 855
BseNI ACTGG 2 cut(s) 608, 689
BseXI GCAGC 4 cut(s) 237, 862, 872, 890
Bsh1236I CGCG 2 cut(s) 29, 914
BshFI GGCC 2 cut(s) 90, 688
BshVI ATCGAT 1 cut(s) 696
BsiHKAI GWGCWC 3 cut(s) 8, 838, 844
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 4 cut(s) 97, 266, 392, 451
BsnI GGCC 2 cut(s) 90, 688
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 3 cut(s) 8, 838, 844
Bsp143I GATC 4 cut(s) 637, 697, 737, 794
BspACI CCGC 5 cut(s) 29, 71, 144, 912, 914
BspANI GGCC 2 cut(s) 90, 688
BspCNI CTCAG 2 cut(s) 32, 856
BspDI ATCGAT 1 cut(s) 696
BspFNI CGCG 2 cut(s) 29, 914
BspLI GGNNCC 2 cut(s) 170, 574
BspMAI CTGCAG 1 cut(s) 880
BspPI GGATC 3 cut(s) 632, 692, 802
BsrDI GCAATG 2 cut(s) 513, 785
BsrI ACTGG 2 cut(s) 608, 689
BssECI CCNNGG 5 cut(s) 400, 760, 771, 772, 912
BssMI GATC 4 cut(s) 637, 697, 737, 794
BssT1I CCWWGG 1 cut(s) 760
Bst2UI CCWGG 4 cut(s) 148, 452, 773, 792
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 3 cut(s) 817, 888, 898
BstC8I GCNNGC 1 cut(s) 873
BstDEI CTNAG 5 cut(s) 19, 421, 480, 596, 864
BstDSI CCRYGG 2 cut(s) 400, 912
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 3 cut(s) 179, 441, 729
BstFNI CGCG 2 cut(s) 29, 914
BstHHI GCGC 2 cut(s) 29, 883
BstKTI GATC 4 cut(s) 640, 700, 740, 797
BstMBI GATC 4 cut(s) 637, 697, 737, 794
BstNI CCWGG 4 cut(s) 148, 452, 773, 792
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 4 cut(s) 146, 450, 771, 790
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 2 cut(s) 29, 914
BstV1I GCAGC 4 cut(s) 237, 862, 872, 890
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 737, 794
BstYI RGATCY 2 cut(s) 737, 794
Bsu15I ATCGAT 1 cut(s) 696
BsuRI GGCC 2 cut(s) 90, 688
BsuTUI ATCGAT 1 cut(s) 696
BtgI CCRYGG 2 cut(s) 400, 912
BtsCI GGATG 3 cut(s) 179, 441, 729
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 333
Cac8I GCNNGC 1 cut(s) 873
CfoI GCGC 2 cut(s) 29, 883
Cfr42I CCGCGG 1 cut(s) 915
ClaI ATCGAT 1 cut(s) 696
Csp6I GTAC 2 cut(s) 780, 888
CviQI GTAC 2 cut(s) 780, 888
DdeI CTNAG 5 cut(s) 19, 421, 480, 596, 864
DpnI GATC 4 cut(s) 639, 699, 739, 796
DpnII GATC 4 cut(s) 637, 697, 737, 794
DraIII CACNNNGTG 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 3 cut(s) 817, 888, 898
EarI CTCTTC 3 cut(s) 817, 888, 898
Ecl136II GAGCTC 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 760
Eco24I GRGCYC 1 cut(s) 844
Eco53kI GAGCTC 1 cut(s) 842
Eco57I CTGAAG 1 cut(s) 762
Eco88I CYCGRG 1 cut(s) 837
Eco91I GGTNACC 1 cut(s) 486
EcoICRI GAGCTC 1 cut(s) 842
EcoO65I GGTNACC 1 cut(s) 486
EcoRII CCWGG 4 cut(s) 146, 450, 771, 790
EcoT14I CCWWGG 1 cut(s) 760
EcoT38I GRGCYC 1 cut(s) 844
ErhI CCWWGG 1 cut(s) 760
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FauI CCCGC 2 cut(s) 22, 151
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 5 cut(s) 251, 861, 876, 879, 912
FokI GGATG 3 cut(s) 166, 428, 736
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 5 cut(s) 251, 861, 876, 879, 912
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 28, 882
GluI GCNGC 5 cut(s) 251, 861, 876, 879, 912
HaeIII GGCC 2 cut(s) 90, 688
HapII CCGG 1 cut(s) 183
HhaI GCGC 2 cut(s) 29, 883
Hin6I GCGC 2 cut(s) 27, 881
HinP1I GCGC 2 cut(s) 27, 881
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 523, 744
HinfI GANTC 4 cut(s) 154, 405, 755, 896
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 3 cut(s) 48, 304, 614
Hpy188I TCNGA 3 cut(s) 723, 742, 799
Hpy188III TCNNGA 5 cut(s) 166, 529, 816, 845, 900
Hpy8I GTNNAC 3 cut(s) 48, 304, 614
HpyCH4III ACNGT 1 cut(s) 887
HpyCH4IV ACGT 1 cut(s) 782
HpyCH4V TGCA 5 cut(s) 60, 324, 656, 707, 878
HpyF3I CTNAG 5 cut(s) 19, 421, 480, 596, 864
HpySE526I ACGT 1 cut(s) 782
HspAI GCGC 2 cut(s) 27, 881
KspAI GTTAAC 1 cut(s) 304
KspI CCGCGG 1 cut(s) 915
Kzo9I GATC 4 cut(s) 637, 697, 737, 794
LmnI GCTCC 1 cut(s) 24
Lsp1109I GCAGC 4 cut(s) 237, 862, 872, 890
LweI GCATC 5 cut(s) 438, 714, 716, 821, 898
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 782
MaeIII GTNAC 4 cut(s) 185, 331, 486, 764
MalI GATC 4 cut(s) 639, 699, 739, 796
MboI GATC 4 cut(s) 637, 697, 737, 794
MflI RGATCY 2 cut(s) 737, 794
MhlI GDGCHC 3 cut(s) 8, 838, 844
MluCI AATT 2 cut(s) 368, 677
MlyI GAGTC 2 cut(s) 414, 905
MmeI TCCRAC 1 cut(s) 566
MnlI CCTC 7 cut(s) 80, 123, 140, 182, 678, 824, 861
MseI TTAA 3 cut(s) 303, 563, 925
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 2 cut(s) 863, 914
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 4 cut(s) 148, 452, 773, 792
MvaI CCWGG 4 cut(s) 148, 452, 773, 792
MvnI CGCG 2 cut(s) 29, 914
NdeI CATATG 1 cut(s) 320
NdeII GATC 4 cut(s) 637, 697, 737, 794
NlaIV GGNNCC 2 cut(s) 170, 574
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 331, 764
PaeR7I CTCGAG 1 cut(s) 837
PasI CCCWGGG 1 cut(s) 772
PfeI GAWTC 2 cut(s) 154, 755
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 5 cut(s) 252, 862, 877, 880, 913
PleI GAGTC 2 cut(s) 413, 904
PpsI GAGTC 2 cut(s) 413, 904
Psp124BI GAGCTC 1 cut(s) 844
Psp6I CCWGG 4 cut(s) 146, 450, 771, 790
PspEI GGTNACC 1 cut(s) 486
PspGI CCWGG 4 cut(s) 146, 450, 771, 790
PspN4I GGNNCC 2 cut(s) 170, 574
PspXI VCTCGAGB 1 cut(s) 837
PstI CTGCAG 1 cut(s) 880
PsuI RGATCY 2 cut(s) 737, 794
PvuII CAGCTG 1 cut(s) 863
RsaI GTAC 2 cut(s) 781, 889
RsaNI GTAC 2 cut(s) 780, 888
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 844
SacII CCGCGG 1 cut(s) 915
SaqAI TTAA 3 cut(s) 303, 563, 925
SatI GCNGC 5 cut(s) 251, 861, 876, 879, 912
Sau3AI GATC 4 cut(s) 637, 697, 737, 794
SchI GAGTC 2 cut(s) 414, 905
ScrFI CCNGG 4 cut(s) 148, 452, 773, 792
SduI GDGCHC 3 cut(s) 8, 838, 844
SfaNI GCATC 5 cut(s) 438, 714, 716, 821, 898
SfcI CTRYAG 1 cut(s) 876
Sfr274I CTCGAG 1 cut(s) 837
Sfr303I CCGCGG 1 cut(s) 915
SgrBI CCGCGG 1 cut(s) 915
SlaI CTCGAG 1 cut(s) 837
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 629, 837
SmoI CTYRAG 2 cut(s) 629, 837
Sse9I AATT 2 cut(s) 368, 677
SsiI CCGC 5 cut(s) 29, 71, 144, 912, 914
SspI AATATT 1 cut(s) 567
SspMI CTAG 1 cut(s) 273
SstI GAGCTC 1 cut(s) 844
StyD4I CCNGG 4 cut(s) 146, 450, 771, 790
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 1 cut(s) 887
TaiI ACGT 1 cut(s) 785
TaqI TCGA 3 cut(s) 696, 838, 846
TasI AATT 2 cut(s) 368, 677
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 2 cut(s) 154, 755
Tru1I TTAA 3 cut(s) 303, 563, 925
Tru9I TTAA 3 cut(s) 303, 563, 925
TscAI CASTG 1 cut(s) 340
TseFI GTSAC 2 cut(s) 331, 764
TseI GCWGC 4 cut(s) 250, 860, 875, 878
Tsp45I GTSAC 2 cut(s) 331, 764
TspDTI ATGAA 2 cut(s) 280, 768
TspGWI ACGGA 2 cut(s) 380, 417
TspRI CASTG 1 cut(s) 340
Van91I CCANNNNNTGG 1 cut(s) 97
XapI RAATTY 2 cut(s) 368, 677
XhoI CTCGAG 1 cut(s) 837
XspI CTAG 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.