RchiOBHm_Chr1g0363681

Transmembrane protein 115-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0015038
Physical Location & Seq
Forward (+)
55033868 .. 55037476
3609 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58840

Sequence Viewer

Length: 927 bp
ATGAGCACTCCGTCACTCGCAGGGGGCATGGGGGCCTTCTCTGGGTTCACTCGGCTATGCAAGGGCTTAGCGGTGGTCCTGATTGGAGGCCACATTGTCGTTCAGCTCCTCCCCGTCGCCGTTACTTACCTCGCCCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCGTCACATCCGGTTACATTGAACAATCAATATTTGGGGTTGTTGTAAGCACTCTTGGTCTTCTTTTTATAGGGAAGCTGCTTGAACCTGTCTGGGGTTCCAGGGAGTTCTTGAAGTTTATCTTTGTAGTTAACTTCCTAACTTCCATATGCATTTTCATCACTGCCATTGCGCTGTACTACATCACAAGGAAGGAAACTTACCTATATATGCCTCTTTCTGGCTTCCATGGAGTCCTTTCAGGTTTTTTGGTTGGCATTAAGCAAATGATACCTGACCAAGAGTTGCCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTCTCTCACTACTGCTGTCCATTGCCATAAGCTTCTGGACAGCTGAGTCAGCAACATATCTTCCAATCTTGATATTTGGCACCTATATGAGCTGGATTTACCTTAGATACTGGCAGAGAAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTCTTGAGACCAGTCATTGATCCTGTTGCATCCATATTCCATCGGATGCTTTGTGGAAGATCTGAAGCCTCTAATGAAGCGCAAGGTTATACCGTGGGAGGGACCACATTGCCTGGATCTGACCCCATTGAGGCATCTAGAAGGAGGGAAAGAGGGGCACGAGCACTGGAAGAAAGACTAGCAGCTGAGAGATTGGGTGCAGCAACGGGTACAGAAGAGCTGGGAAGAGATGCCACAGAGAATGTATAG

Protein Analysis

308

Amino Acids

34.06

Weight (kDa)

8.69

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 48 - 146 1.5e-34 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 2 cut(s) 71, 144
AclWI GGATC 3 cut(s) 632, 692, 802
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 350, 889
AfiI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
AgsI TTSAA 4 cut(s) 194, 257, 286, 469
AjnI CCWGG 3 cut(s) 146, 272, 790
AluBI AGCT 8 cut(s) 106, 250, 479, 525, 536, 585, 863, 898
AluI AGCT 8 cut(s) 106, 250, 479, 525, 536, 585, 863, 898
Alw21I GWGCWC 2 cut(s) 8, 844
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 632, 692, 802
AoxI GGCC 2 cut(s) 33, 88
ApeKI GCWGC 3 cut(s) 250, 860, 878
ApoI RAATTY 1 cut(s) 677
AspLEI GCGC 2 cut(s) 346, 760
AspS9I GGNCC 3 cut(s) 33, 76, 780
AsuHPI GGTGA 1 cut(s) 647
AvaII GGWCC 2 cut(s) 76, 780
BaeGI GKGCMC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 8, 844
BbvI GCAGC 3 cut(s) 237, 872, 890
BccI CCATC 2 cut(s) 499, 726
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 3 cut(s) 148, 274, 792
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 2 cut(s) 816, 857
BglII AGATCT 1 cut(s) 737
BisI GCNGC 3 cut(s) 251, 861, 879
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 252, 862, 880
Bme1390I CCNGG 3 cut(s) 148, 274, 792
Bme18I GGWCC 2 cut(s) 76, 780
BmgT120I GGNCC 3 cut(s) 33, 76, 780
BmiI GGNNCC 5 cut(s) 34, 170, 271, 574, 781
BmrFI CCNGG 3 cut(s) 148, 274, 792
BmsI GCATC 4 cut(s) 714, 716, 821, 898
BpiI GAAGAC 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 2 cut(s) 614, 703
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 3 cut(s) 273, 400, 771
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
Bse1I ACTGG 3 cut(s) 608, 689, 849
Bse3DI GCAATG 3 cut(s) 339, 513, 785
BseBI CCWGG 3 cut(s) 148, 274, 792
BseDI CCNNGG 3 cut(s) 273, 400, 771
BseGI GGATG 3 cut(s) 179, 707, 729
BseLI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
BseMI GCAATG 3 cut(s) 339, 513, 785
BseMII CTCAG 2 cut(s) 528, 855
BseNI ACTGG 3 cut(s) 608, 689, 849
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 237, 872, 890
BseYI CCCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 2 cut(s) 35, 90
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 8, 844
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 2 cut(s) 35, 90
Bso31I GGTCTC 1 cut(s) 679
Bsp1286I GDGCHC 3 cut(s) 8, 838, 844
Bsp143I GATC 4 cut(s) 637, 697, 737, 794
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 2 cut(s) 71, 144
BspANI GGCC 2 cut(s) 35, 90
BspCNI CTCAG 2 cut(s) 529, 856
BspLI GGNNCC 5 cut(s) 34, 170, 271, 574, 781
BspPI GGATC 3 cut(s) 632, 692, 802
BspQI GCTCTTC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 679
BsrDI GCAATG 3 cut(s) 339, 513, 785
BsrI ACTGG 3 cut(s) 608, 689, 849
BssECI CCNNGG 3 cut(s) 273, 400, 771
BssMI GATC 4 cut(s) 637, 697, 737, 794
BssSI CACGAG 1 cut(s) 837
BssT1I CCWWGG 1 cut(s) 400
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 3 cut(s) 148, 274, 792
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 2 cut(s) 888, 898
BstDEI CTNAG 5 cut(s) 67, 480, 537, 596, 864
BstDSI CCRYGG 2 cut(s) 400, 771
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 3 cut(s) 179, 707, 729
BstHHI GCGC 2 cut(s) 346, 760
BstKTI GATC 4 cut(s) 640, 700, 740, 797
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 4 cut(s) 637, 697, 737, 794
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 3 cut(s) 148, 274, 792
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 3 cut(s) 146, 272, 790
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 237, 872, 890
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 737, 794
BstYI RGATCY 2 cut(s) 737, 794
BsuRI GGCC 2 cut(s) 35, 90
BtgI CCRYGG 2 cut(s) 400, 771
BtsCI GGATG 3 cut(s) 179, 707, 729
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 333, 842
CfoI GCGC 2 cut(s) 346, 760
Cfr13I GGNCC 3 cut(s) 33, 76, 780
Csp6I GTAC 2 cut(s) 349, 888
CviAII CATG 2 cut(s) 28, 401
CviQI GTAC 2 cut(s) 349, 888
DdeI CTNAG 5 cut(s) 67, 480, 537, 596, 864
DpnI GATC 4 cut(s) 639, 699, 739, 796
DpnII GATC 4 cut(s) 637, 697, 737, 794
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 888, 898
EarI CTCTTC 2 cut(s) 888, 898
Eco130I CCWWGG 1 cut(s) 400
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 76, 780
Eco57I CTGAAG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 146, 272, 790
EcoT14I CCWWGG 1 cut(s) 400
EcoT22I ATGCAT 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 2 cut(s) 31, 404
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 793
FatI CATG 2 cut(s) 27, 400
FauI CCCGC 1 cut(s) 151
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 3 cut(s) 251, 861, 879
FokI GGATG 3 cut(s) 166, 694, 736
Fsp4HI GCNGC 3 cut(s) 251, 861, 879
FspBI CTAG 2 cut(s) 816, 857
GlaI GCGC 2 cut(s) 345, 759
GluI GCNGC 3 cut(s) 251, 861, 879
GsaI CCCAGC 1 cut(s) 902
HaeIII GGCC 2 cut(s) 35, 90
HapII CCGG 1 cut(s) 183
HhaI GCGC 2 cut(s) 346, 760
Hin1II CATG 2 cut(s) 31, 404
Hin6I GCGC 2 cut(s) 344, 758
HinP1I GCGC 2 cut(s) 344, 758
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 3 cut(s) 154, 405, 539
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 2 cut(s) 48, 304
Hpy188I TCNGA 3 cut(s) 723, 742, 799
Hpy188III TCNNGA 7 cut(s) 79, 166, 283, 529, 562, 682, 816
Hpy8I GTNNAC 2 cut(s) 48, 304
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 46, 358, 813
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4V TGCA 5 cut(s) 60, 324, 656, 707, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 5 cut(s) 67, 480, 537, 596, 864
Hsp92II CATG 2 cut(s) 31, 404
HspAI GCGC 2 cut(s) 344, 758
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 4 cut(s) 637, 697, 737, 794
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 237, 872, 890
LweI GCATC 4 cut(s) 714, 716, 821, 898
MaeI CTAG 2 cut(s) 816, 857
MaeIII GTNAC 5 cut(s) 12, 121, 175, 185, 486
MalI GATC 4 cut(s) 639, 699, 739, 796
MboI GATC 4 cut(s) 637, 697, 737, 794
MboII GAAGA 8 cut(s) 224, 545, 659, 661, 747, 860, 905, 915
MflI RGATCY 2 cut(s) 737, 794
MhlI GDGCHC 3 cut(s) 8, 838, 844
MluCI AATT 1 cut(s) 677
MlyI GAGTC 2 cut(s) 414, 548
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 2 cut(s) 303, 432
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 536, 863
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 148, 274, 792
MvaI CCWGG 3 cut(s) 148, 274, 792
MwoI GCNNNNNNNGC 1 cut(s) 542
NcoI CCATGG 1 cut(s) 400
NdeI CATATG 1 cut(s) 320
NdeII GATC 4 cut(s) 637, 697, 737, 794
NlaIII CATG 2 cut(s) 31, 404
NlaIV GGNNCC 5 cut(s) 34, 170, 271, 574, 781
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 12, 175
NsiI ATGCAT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 252, 862, 880
PleI GAGTC 2 cut(s) 413, 547
PpsI GAGTC 2 cut(s) 413, 547
Psp6I CCWGG 3 cut(s) 146, 272, 790
PspEI GGTNACC 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 898
PspGI CCWGG 3 cut(s) 146, 272, 790
PspN4I GGNNCC 5 cut(s) 34, 170, 271, 574, 781
PspPI GGNCC 3 cut(s) 33, 76, 780
PsuI RGATCY 2 cut(s) 737, 794
PvuII CAGCTG 2 cut(s) 536, 863
RsaI GTAC 2 cut(s) 350, 889
RsaNI GTAC 2 cut(s) 349, 888
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 303, 432
SatI GCNGC 3 cut(s) 251, 861, 879
Sau3AI GATC 4 cut(s) 637, 697, 737, 794
Sau96I GGNCC 3 cut(s) 33, 76, 780
SchI GAGTC 2 cut(s) 414, 548
ScrFI CCNGG 3 cut(s) 148, 274, 792
SduI GDGCHC 3 cut(s) 8, 838, 844
SfaNI GCATC 4 cut(s) 714, 716, 821, 898
SinI GGWCC 2 cut(s) 76, 780
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 629, 682
SmoI CTYRAG 2 cut(s) 629, 682
Sse9I AATT 1 cut(s) 677
SsiI CCGC 2 cut(s) 71, 144
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 816, 857
StyD4I CCNGG 3 cut(s) 146, 272, 790
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 1 cut(s) 772
TasI AATT 1 cut(s) 677
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 303, 432
Tru9I TTAA 2 cut(s) 303, 432
TscAI CASTG 2 cut(s) 340, 849
TseFI GTSAC 2 cut(s) 12, 175
TseI GCWGC 3 cut(s) 250, 860, 878
Tsp45I GTSAC 2 cut(s) 12, 175
TspDTI ATGAA 2 cut(s) 319, 768
TspRI CASTG 2 cut(s) 340, 849
VpaK11BI GGWCC 2 cut(s) 76, 780
XapI RAATTY 1 cut(s) 677
XbaI TCTAGA 1 cut(s) 815
XspI CTAG 2 cut(s) 816, 857
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.