Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015038

Physical Location & Seq

Genomic Coordinates Reverse (-)

15976214 .. 15980141

Gene Structure 3928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G142500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAGCACTCCATCACTCTCAGTGGGCGCGGGTGCATTCTCTGGGTTCACTCGGCTATGCAAGGGCTTAGCGGTGGTGCTTATTGGAGGACACATTGTGGTTCAGTTTCTCCCTCAGGCCGTTAATTATCTAGCGCTCATTCCCGCCAGGACTATTCCTTTTGTCTGGAACCTCCTAACAGCCGGTTACATTGAGCAATCAGTATATGGGGTTGTTGTTAGCACTCTTGGTCTTCTTTTTATTGGGAAGCTGCTTGAACCTGTGTGGGGTTCTAGGGAGTTCTTGAAGTTCATCTTTGTAGTTAACTTCCTAACTTCCATATGCACTTTCATCACTGCTATTGCGTTGTACTACATTACGATGAACGAAAATTACCTCTATCTGCCTCTTTCTGGCTTCTATGGGGTCCTTTCAGGTTTCTTGGTTGGCATCAAGCAAATCATCCCTGATCAGGAGTTGCCTTTATTGAAGATAAAATCTAAGTGGTTACCATCTCTCTCTATATTGTTGTCCATTGCCATAAGCTTCTGGACAGCACAGTCAGCAACATATCTTCCCATTTTAATATTTGGCACCTATATTAGCTGGGTTTATCTCAGATACTGGCAGAGGAAACCAGAAACTAAACTCAAGGGTGACCCAAGTGATGATTTTGCATTTTCTACATTCTTCCCTGAATTTTTAAGACCAGTCATTGATCCTGTTGCATCTATATTCCATCGGATGCTCTGTGGAAGATTTGAAGCTTCCAGCGAATCCCAAGGTTATACCCTTGGAGGCACCACATTGCCTGGATCCGACCCCATTGAAGCATCTAGAAGGAGAGAAAGAGGGGCTCGAGCACTCGAAGAAAGACTGGCAGCTGAGAGGTTGGGTGCAGCACAGGGTACAGAAGAGTCAGGAAGAGATGCCACGGAGAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1751

Protein Analysis

309

Amino Acids

34.1

Weight (kDa)

8.35

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07950
fragaria_vesca	FvH4_7g19770
malus_domestica	MD07G1176100.v1.1
prunus_persica	Prupe.8G142500_v2.0.a1
pyrus_communis	pycom01g13740 pycom07g17030
rosa_chinensis	RchiOBHm_Chr1g0363681
rosa_laevigata	RLG00000027552
rosa_multiflora	Rmu_sc0000548.1_g000013
rosa_roxburghii	Rroxscaffold_4G00293000
rosa_rugosa	Rorug01G0308500
rosa_samantha	Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana	Rw1G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	538
AccB1I	GGYRCC	2 cut(s)	572, 779
AccII	CGCG	1 cut(s)	29
AciI	CCGC	3 cut(s)	29, 71, 144
AclWI	GGATC	3 cut(s)	692, 789, 802
AcsI	RAATTY	1 cut(s)	677
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	2 cut(s)	350, 889
AfeI	AGCGCT	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	266, 392, 451
AgsI	TTSAA	5 cut(s)	257, 286, 469, 743, 809
AjnI	CCWGG	2 cut(s)	146, 790
AluBI	AGCT	5 cut(s)	250, 525, 585, 746, 863
AluI	AGCT	5 cut(s)	250, 525, 585, 746, 863
Alw21I	GWGCWC	2 cut(s)	8, 844
AlwI	GGATC	3 cut(s)	692, 789, 802
AlwNI	CAGNNNCTG	1 cut(s)	603
Ama87I	CYCGRG	1 cut(s)	837
Aor51HI	AGCGCT	1 cut(s)	135
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	3 cut(s)	250, 860, 878
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	2 cut(s)	29, 136
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	1 cut(s)	837
AvaII	GGWCC	1 cut(s)	406
AxyI	CCTNAGG	1 cut(s)	114
BamHI	GGATCC	1 cut(s)	794
BanI	GGYRCC	2 cut(s)	572, 779
BanII	GRGCYC	1 cut(s)	838
BbsI	GAAGAC	1 cut(s)	224
Bbv12I	GWGCWC	2 cut(s)	8, 844
BbvI	GCAGC	3 cut(s)	237, 872, 890
BccI	CCATC	3 cut(s)	19, 499, 726
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	148, 792
BclI	TGATCA	1 cut(s)	448
BfaI	CTAG	3 cut(s)	131, 273, 816
BfoI	RGCGCY	1 cut(s)	137
BisI	GCNGC	3 cut(s)	251, 861, 879
BlpI	GCTNAGC	1 cut(s)	67
BlsI	GCNGC	3 cut(s)	252, 862, 880
Bme1390I	CCNGG	2 cut(s)	148, 792
Bme18I	GGWCC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	837
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	5 cut(s)	170, 407, 574, 781, 796
BmrFI	CCNGG	2 cut(s)	148, 792
BmsI	GCATC	5 cut(s)	438, 714, 716, 821, 898
BpiI	GAAGAC	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	67
BpuEI	CTTGAG	1 cut(s)	614
BsaJI	CCNNGG	3 cut(s)	760, 772, 912
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 392, 451
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	3 cut(s)	608, 689, 861
Bse21I	CCTNAGG	1 cut(s)	114
Bse3DI	GCAATG	2 cut(s)	513, 785
BseBI	CCWGG	2 cut(s)	148, 792
BseDI	CCNNGG	3 cut(s)	760, 772, 912
BseGI	GGATG	2 cut(s)	441, 729
BseLI	CCNNNNNNNGG	3 cut(s)	266, 392, 451
BseMI	GCAATG	2 cut(s)	513, 785
BseMII	CTCAG	4 cut(s)	33, 128, 610, 855
BseNI	ACTGG	3 cut(s)	608, 689, 861
BseXI	GCAGC	3 cut(s)	237, 872, 890
BseYI	CCCAGC	1 cut(s)	585
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	572, 779
BsiHKAI	GWGCWC	2 cut(s)	8, 844
BsiHKCI	CYCGRG	1 cut(s)	837
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	266, 392, 451
BsmI	GAATGC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	119
BsoBI	CYCGRG	1 cut(s)	837
Bsp1286I	GDGCHC	3 cut(s)	8, 838, 844
Bsp143I	GATC	3 cut(s)	448, 697, 794
Bsp1720I	GCTNAGC	1 cut(s)	67
BspACI	CCGC	3 cut(s)	29, 71, 144
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	4 cut(s)	32, 127, 609, 856
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	5 cut(s)	170, 407, 574, 781, 796
BspPI	GGATC	3 cut(s)	692, 789, 802
BspT107I	GGYRCC	2 cut(s)	572, 779
BsrDI	GCAATG	2 cut(s)	513, 785
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	608, 689, 861
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	3 cut(s)	760, 772, 912
BssMI	GATC	3 cut(s)	448, 697, 794
BssT1I	CCWWGG	2 cut(s)	760, 772
Bst2UI	CCWGG	2 cut(s)	148, 792
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	2 cut(s)	888, 898
BstDEI	CTNAG	6 cut(s)	19, 67, 114, 480, 596, 864
BstDSI	CCRYGG	1 cut(s)	912
BstEII	GGTNACC	2 cut(s)	486, 635
BstF5I	GGATG	2 cut(s)	441, 729
BstFNI	CGCG	1 cut(s)	29
BstH2I	RGCGCY	1 cut(s)	137
BstHHI	GCGC	2 cut(s)	29, 136
BstKTI	GATC	3 cut(s)	451, 700, 797
BstMBI	GATC	3 cut(s)	448, 697, 794
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNI	CCWGG	2 cut(s)	148, 792
BstPI	GGTNACC	2 cut(s)	486, 635
BstSCI	CCNGG	2 cut(s)	146, 790
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	3 cut(s)	237, 872, 890
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	2 cut(s)	441, 729
BtsI	GCAGTG	1 cut(s)	333
BtsIMutI	CAGTG	2 cut(s)	27, 333
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	2 cut(s)	29, 136
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	1 cut(s)	406
Csp6I	GTAC	2 cut(s)	349, 888
CviQI	GTAC	2 cut(s)	349, 888
DdeI	CTNAG	6 cut(s)	19, 67, 114, 480, 596, 864
DpnI	GATC	3 cut(s)	450, 699, 796
DpnII	GATC	3 cut(s)	448, 697, 794
DraIII	CACNNNGTG	1 cut(s)	97
DrdI	GACNNNNNNGTC	1 cut(s)	538
DseDI	GACNNNNNNGTC	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	888, 898
EarI	CTCTTC	2 cut(s)	888, 898
Eco130I	CCWWGG	2 cut(s)	760, 772
Eco24I	GRGCYC	1 cut(s)	838
Eco47I	GGWCC	1 cut(s)	406
Eco47III	AGCGCT	1 cut(s)	135
Eco81I	CCTNAGG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	837
Eco91I	GGTNACC	2 cut(s)	486, 635
EcoO109I	RGGNCCY	1 cut(s)	406
EcoO65I	GGTNACC	2 cut(s)	486, 635
EcoRII	CCWGG	2 cut(s)	146, 790
EcoT14I	CCWWGG	2 cut(s)	760, 772
EcoT38I	GRGCYC	1 cut(s)	838
ErhI	CCWWGG	2 cut(s)	760, 772
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FauI	CCCGC	2 cut(s)	22, 151
FauNDI	CATATG	1 cut(s)	320
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	3 cut(s)	251, 861, 879
FokI	GGATG	2 cut(s)	428, 736
FriOI	GRGCYC	1 cut(s)	838
Fsp4HI	GCNGC	3 cut(s)	251, 861, 879
FspBI	CTAG	3 cut(s)	131, 273, 816
GlaI	GCGC	2 cut(s)	28, 135
GluI	GCNGC	3 cut(s)	251, 861, 879
GsaI	CCCAGC	1 cut(s)	589
HaeII	RGCGCY	1 cut(s)	137
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	29, 136
Hin6I	GCGC	2 cut(s)	27, 134
HinP1I	GCGC	2 cut(s)	27, 134
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	2 cut(s)	523, 744
HinfI	GANTC	2 cut(s)	755, 896
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	2 cut(s)	48, 304
Hpy188I	TCNGA	3 cut(s)	599, 723, 799
Hpy188III	TCNNGA	6 cut(s)	166, 283, 452, 529, 816, 900
Hpy8I	GTNNAC	2 cut(s)	48, 304
HpyAV	CCTTC	1 cut(s)	813
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4V	TGCA	6 cut(s)	35, 60, 324, 656, 707, 878
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	6 cut(s)	19, 67, 114, 480, 596, 864
HspAI	GCGC	2 cut(s)	27, 134
Ksp22I	TGATCA	1 cut(s)	448
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	448, 697, 794
Lsp1109I	GCAGC	3 cut(s)	237, 872, 890
LweI	GCATC	5 cut(s)	438, 714, 716, 821, 898
MaeI	CTAG	3 cut(s)	131, 273, 816
MaeIII	GTNAC	3 cut(s)	185, 486, 635
MalI	GATC	3 cut(s)	450, 699, 796
MboI	GATC	3 cut(s)	448, 697, 794
MboII	GAAGA	8 cut(s)	224, 481, 545, 661, 747, 860, 905, 915
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	3 cut(s)	8, 838, 844
MluCI	AATT	3 cut(s)	124, 370, 677
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	1 cut(s)	822
MnlI	CCTC	9 cut(s)	80, 123, 182, 386, 396, 603, 770, 824, 861
MseI	TTAA	5 cut(s)	123, 303, 563, 683, 925
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	863
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	2 cut(s)	148, 792
Mva1269I	GAATGC	1 cut(s)	35
MvaI	CCWGG	2 cut(s)	148, 792
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	3 cut(s)	448, 697, 794
NlaIV	GGNNCC	5 cut(s)	170, 407, 574, 781, 796
NmeAIII	GCCGAG	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	635
PaeR7I	CTCGAG	1 cut(s)	837
PctI	GAATGC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	755
PkrI	GCNGC	3 cut(s)	252, 862, 880
PleI	GAGTC	1 cut(s)	904
PpsI	GAGTC	1 cut(s)	904
PpuMI	RGGWCCY	1 cut(s)	406
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	2 cut(s)	146, 790
PspEI	GGTNACC	2 cut(s)	486, 635
PspFI	CCCAGC	1 cut(s)	585
PspGI	CCWGG	2 cut(s)	146, 790
PspN4I	GGNNCC	5 cut(s)	170, 407, 574, 781, 796
PspPI	GGNCC	1 cut(s)	406
PspPPI	RGGWCCY	1 cut(s)	406
PspXI	VCTCGAGB	1 cut(s)	837
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	2 cut(s)	350, 889
RsaNI	GTAC	2 cut(s)	349, 888
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	5 cut(s)	123, 303, 563, 683, 925
SatI	GCNGC	3 cut(s)	251, 861, 879
Sau3AI	GATC	3 cut(s)	448, 697, 794
Sau96I	GGNCC	1 cut(s)	406
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	2 cut(s)	148, 792
SduI	GDGCHC	3 cut(s)	8, 838, 844
SfaNI	GCATC	5 cut(s)	438, 714, 716, 821, 898
Sfr274I	CTCGAG	1 cut(s)	837
SinI	GGWCC	1 cut(s)	406
SlaI	CTCGAG	1 cut(s)	837
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	2 cut(s)	629, 837
SmoI	CTYRAG	2 cut(s)	629, 837
Sse9I	AATT	3 cut(s)	124, 370, 677
SsiI	CCGC	3 cut(s)	29, 71, 144
SspI	AATATT	1 cut(s)	567
SspMI	CTAG	3 cut(s)	131, 273, 816
StyD4I	CCNGG	2 cut(s)	146, 790
StyI	CCWWGG	2 cut(s)	760, 772
TaaI	ACNGT	1 cut(s)	540
TaqI	TCGA	2 cut(s)	838, 846
TasI	AATT	3 cut(s)	124, 370, 677
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	1 cut(s)	755
Tru1I	TTAA	5 cut(s)	123, 303, 563, 683, 925
Tru9I	TTAA	5 cut(s)	123, 303, 563, 683, 925
TscAI	CASTG	2 cut(s)	27, 340
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	3 cut(s)	250, 860, 878
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	3 cut(s)	280, 319, 377
TspRI	CASTG	2 cut(s)	27, 340
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	1 cut(s)	677
XbaI	TCTAGA	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	837
XspI	CTAG	3 cut(s)	131, 273, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.