FvH4_7g19770

Transmembrane protein 115-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015038
Physical Location & Seq
Forward (+)
16244352 .. 16248138
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19770.t1

Sequence Viewer

Length: 927 bp
ATGAGCACTCCATCACTCGCAGGGGGCATGGGGGGCTTCTCTGGGTTTACTCGGCTATGCAAGGGCTTAGCGGTGGTCCTGATTGGAGGCCACATTGTCGTCCAGCTCCTCCCCGTCGCCGTCACCTACCTCGCTCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCGTAACGTCCGGTTACATTGAACAATCAATACATGGGGTTGTTGTAAGCACTCTCGGTCTTCTTTTTATTGGGAAGCTGCTTGAACCTGTCTGGGGTTCCAGGGAGTTCTTGAAATTTATCTTTGTAGTCAACTTCCTTACTTCCATATGCATTTTCATCACTGCCATTGCGCTGTACTACATTACAAGGAAGGAAACCTACCTATATATGCCTCTTTCTGGCTTCCACGGAGTTCTCTCAGGTTTTTTGGTTGGCATTAAGCAAATGATACCTGACCAAGAGTTGCCTGTAATAAAAATAAAAGCCAAGTGGTTACCATCTCTCTCACTATTGCTGTCCATTGCCATAAGCTTCTGGACAGCTGAGTCAGCAACATATCTTCCAATCTTGATATTTGGCACCTATATGAGCTGGATTTACCTTAGATACTGGCAGAGAAAACCAGAAACGAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTCTTAAGACCAGTCATTGATCCTGTTGCATCTATATTCCATCGGATGCTTTGTGGAAGATTTGAAGCCTCTAATGATTCCCAAGGTAATACTGTGGGAGGAACCACATTGCCTGGATCTGACCCCATTGAGGCATCTAGAAGGAGGGAAAGAGGAGCACGAGCACTGGAAGAAAGACTGGCAGCTGAGAGGTTGGGTGCAACAAAGGGTACAGAAGAGTTGGGAAGAGATGCCACAGATAATGTATAA

Protein Analysis

309

Amino Acids

34.08

Weight (kDa)

8.91

Isoelectric Point (pI)

42.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 48 - 146 4.1e-34 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 2 cut(s) 71, 144
AclWI GGATC 3 cut(s) 632, 692, 802
AcsI RAATTY 2 cut(s) 287, 677
AfaI GTAC 2 cut(s) 350, 889
AfiI CCNNNNNNNGG 3 cut(s) 266, 392, 808
AflII CTTAAG 1 cut(s) 682
AgsI TTSAA 4 cut(s) 194, 257, 286, 743
AjnI CCWGG 3 cut(s) 146, 272, 790
AluBI AGCT 6 cut(s) 106, 250, 525, 536, 585, 863
AluI AGCT 6 cut(s) 106, 250, 525, 536, 585, 863
Alw21I GWGCWC 3 cut(s) 8, 838, 844
AlwI GGATC 3 cut(s) 632, 692, 802
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 2 cut(s) 250, 860
ApoI RAATTY 2 cut(s) 287, 677
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 115, 647
AvaII GGWCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 572
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 3 cut(s) 8, 838, 844
BbvI GCAGC 2 cut(s) 237, 872
BccI CCATC 3 cut(s) 19, 499, 726
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 3 cut(s) 148, 274, 792
BfaI CTAG 1 cut(s) 816
BfrI CTTAAG 1 cut(s) 682
BisI GCNGC 2 cut(s) 251, 861
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 2 cut(s) 252, 862
Bme1390I CCNGG 3 cut(s) 148, 274, 792
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 4 cut(s) 170, 271, 574, 781
BmrFI CCNGG 3 cut(s) 148, 274, 792
BmsI GCATC 4 cut(s) 714, 716, 821, 898
BpiI GAAGAC 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 614
BsaJI CCNNGG 3 cut(s) 273, 400, 760
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 3 cut(s) 266, 392, 808
Bse1I ACTGG 4 cut(s) 608, 689, 849, 861
Bse3DI GCAATG 3 cut(s) 339, 513, 785
BseBI CCWGG 3 cut(s) 148, 274, 792
BseDI CCNNGG 3 cut(s) 273, 400, 760
BseGI GGATG 1 cut(s) 729
BseLI CCNNNNNNNGG 3 cut(s) 266, 392, 808
BseMI GCAATG 3 cut(s) 339, 513, 785
BseMII CTCAG 3 cut(s) 426, 528, 855
BseNI ACTGG 4 cut(s) 608, 689, 849, 861
BseRI GAGGAG 2 cut(s) 98, 846
BseXI GCAGC 2 cut(s) 237, 872
BshFI GGCC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 3 cut(s) 8, 838, 844
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 3 cut(s) 266, 392, 808
BsnI GGCC 1 cut(s) 90
Bsp1286I GDGCHC 3 cut(s) 8, 838, 844
Bsp143I GATC 3 cut(s) 637, 697, 794
Bsp1720I GCTNAGC 1 cut(s) 67
BspACI CCGC 2 cut(s) 71, 144
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 3 cut(s) 425, 529, 856
BspLI GGNNCC 4 cut(s) 170, 271, 574, 781
BspPI GGATC 3 cut(s) 632, 692, 802
BspT107I GGYRCC 1 cut(s) 572
BspTI CTTAAG 1 cut(s) 682
BsrDI GCAATG 3 cut(s) 339, 513, 785
BsrI ACTGG 4 cut(s) 608, 689, 849, 861
BssECI CCNNGG 3 cut(s) 273, 400, 760
BssMI GATC 3 cut(s) 637, 697, 794
BssSI CACGAG 1 cut(s) 837
BssT1I CCWWGG 1 cut(s) 760
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 3 cut(s) 148, 274, 792
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 2 cut(s) 888, 898
BstAFI CTTAAG 1 cut(s) 682
BstDEI CTNAG 5 cut(s) 67, 412, 537, 596, 864
BstDSI CCRYGG 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 1 cut(s) 729
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 3 cut(s) 640, 700, 797
BstMBI GATC 3 cut(s) 637, 697, 794
BstMWI GCNNNNNNNGC 2 cut(s) 33, 542
BstNI CCWGG 3 cut(s) 148, 274, 792
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 3 cut(s) 146, 272, 790
BstV1I GCAGC 2 cut(s) 237, 872
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 794
BstYI RGATCY 1 cut(s) 794
BsuRI GGCC 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 400
BtsCI GGATG 1 cut(s) 729
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 333, 842
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 76
Csp6I GTAC 2 cut(s) 349, 888
CviAII CATG 2 cut(s) 28, 206
CviQI GTAC 2 cut(s) 349, 888
DdeI CTNAG 5 cut(s) 67, 412, 537, 596, 864
DpnI GATC 3 cut(s) 639, 699, 796
DpnII GATC 3 cut(s) 637, 697, 794
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 888, 898
EarI CTCTTC 2 cut(s) 888, 898
Eco130I CCWWGG 1 cut(s) 760
Eco47I GGWCC 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 486
EcoO65I GGTNACC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 146, 272, 790
EcoT14I CCWWGG 1 cut(s) 760
EcoT22I ATGCAT 1 cut(s) 326
ErhI CCWWGG 1 cut(s) 760
FaeI CATG 2 cut(s) 31, 209
FatI CATG 2 cut(s) 27, 205
FauI CCCGC 1 cut(s) 151
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 2 cut(s) 251, 861
FokI GGATG 1 cut(s) 736
Fsp4HI GCNGC 2 cut(s) 251, 861
FspBI CTAG 1 cut(s) 816
GlaI GCGC 1 cut(s) 345
GluI GCNGC 2 cut(s) 251, 861
HaeIII GGCC 1 cut(s) 90
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 31, 209
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 3 cut(s) 154, 539, 755
HpaII CCGG 1 cut(s) 183
HphI GGTGA 2 cut(s) 115, 647
Hpy166II GTNNAC 2 cut(s) 48, 304
Hpy188I TCNGA 2 cut(s) 723, 799
Hpy188III TCNNGA 6 cut(s) 79, 166, 283, 529, 562, 816
Hpy8I GTNNAC 2 cut(s) 48, 304
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 358, 813
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 5 cut(s) 60, 324, 656, 707, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 542
HpyF3I CTNAG 5 cut(s) 67, 412, 537, 596, 864
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 2 cut(s) 31, 209
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 3 cut(s) 637, 697, 794
LmnI GCTCC 2 cut(s) 111, 833
Lsp1109I GCAGC 2 cut(s) 237, 872
LweI GCATC 4 cut(s) 714, 716, 821, 898
MaeI CTAG 1 cut(s) 816
MaeII ACGT 1 cut(s) 179
MaeIII GTNAC 4 cut(s) 121, 175, 185, 486
MalI GATC 3 cut(s) 639, 699, 796
MboI GATC 3 cut(s) 637, 697, 794
MboII GAAGA 8 cut(s) 224, 545, 659, 661, 747, 860, 905, 915
MflI RGATCY 1 cut(s) 794
MhlI GDGCHC 3 cut(s) 8, 838, 844
MluCI AATT 2 cut(s) 287, 677
MlyI GAGTC 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 2 cut(s) 432, 683
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 536, 863
MspCI CTTAAG 1 cut(s) 682
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 148, 274, 792
MvaI CCWGG 3 cut(s) 148, 274, 792
MwoI GCNNNNNNNGC 2 cut(s) 33, 542
NdeI CATATG 1 cut(s) 320
NdeII GATC 3 cut(s) 637, 697, 794
NlaIII CATG 2 cut(s) 31, 209
NlaIV GGNNCC 4 cut(s) 170, 271, 574, 781
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 121
NsiI ATGCAT 1 cut(s) 326
PfeI GAWTC 2 cut(s) 154, 755
PkrI GCNGC 2 cut(s) 252, 862
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Psp6I CCWGG 3 cut(s) 146, 272, 790
PspEI GGTNACC 1 cut(s) 486
PspGI CCWGG 3 cut(s) 146, 272, 790
PspN4I GGNNCC 4 cut(s) 170, 271, 574, 781
PspPI GGNCC 1 cut(s) 76
PsrI GAACNNNNNNTAC 2 cut(s) 186, 218
PsuI RGATCY 1 cut(s) 794
PvuII CAGCTG 2 cut(s) 536, 863
RsaI GTAC 2 cut(s) 350, 889
RsaNI GTAC 2 cut(s) 349, 888
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 2 cut(s) 432, 683
SatI GCNGC 2 cut(s) 251, 861
Sau3AI GATC 3 cut(s) 637, 697, 794
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 548
ScrFI CCNGG 3 cut(s) 148, 274, 792
SduI GDGCHC 3 cut(s) 8, 838, 844
SfaNI GCATC 4 cut(s) 714, 716, 821, 898
SinI GGWCC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 2 cut(s) 629, 682
SmoI CTYRAG 2 cut(s) 629, 682
Sse9I AATT 2 cut(s) 287, 677
SsiI CCGC 2 cut(s) 71, 144
SspMI CTAG 1 cut(s) 816
StyD4I CCNGG 3 cut(s) 146, 272, 790
StyI CCWWGG 1 cut(s) 760
TaaI ACNGT 1 cut(s) 772
TaiI ACGT 1 cut(s) 182
TaqII GACCGA 1 cut(s) 218
TasI AATT 2 cut(s) 287, 677
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 2 cut(s) 154, 755
Tru1I TTAA 2 cut(s) 432, 683
Tru9I TTAA 2 cut(s) 432, 683
TscAI CASTG 2 cut(s) 340, 849
TseFI GTSAC 1 cut(s) 121
TseI GCWGC 2 cut(s) 250, 860
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 340, 849
Vha464I CTTAAG 1 cut(s) 682
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 2 cut(s) 287, 677
XbaI TCTAGA 1 cut(s) 815
XspI CTAG 1 cut(s) 816
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.