Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000548.1

Orthogroup ID

OG0015038

Physical Location & Seq

Genomic Coordinates Forward (+)

60464 .. 64862

Gene Structure 4399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000548.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggcggtggcgatggacatggagattttgtttttgggatattgtgattcttgtgttcataatgaagtctgcaagttggtggtatcaaggatggttatcctctggctgaggaagaacgttattaagtggaatgttatatttgtgagacgactccgactattacctcgcgccttattccccaaaacccaatttcacattcacctcagagctcctccttctccgatcccgatccacctgatcactccgaccccctccaaatccaacggccgacggccatcacccgccatgagcactccgtcactcgcagggggcatgggggccttctctgggttcactcggctgtgcaagggcttagcggtggtcctgattggaggccacattgtcgttcagctcctccccgtcgccgttacttacctcgccctcattcccgccaggacgattccttttgtctggaacctcgtcacatccggttacattgaacaatcaatatttggggttgttgtaagcactcttggtcttctctttatagggaagctgcttgaacctgtctggggttttctggttggcattaagcaaatgatacctgaccaagagttgcctttattgaaaataaaagctaagtggttaccatctctctcactactgctgtccattgccataagcttctggacagctgagtcagcaacatatcttccaatcttgatatttggcacctatatgagttggatttaccttagatactggcagagaaaaccagaaacaaaacttaagggtgatccaagtgaagattttgcattttctacattcttccctgaattcttgagaccagtcattgatcctgttgcatccatattccatcggatgctttgtggaagatctgaagcctctaatgaagcccaaggttataccgtgggagggaccacattgcctggatctgaccccattgaggcatctagaaggagggaaagaggggcacgagcactggaagaaagactagcagctgagagattgggtgcagcaacgggtacagaagagctgggaagagatgccacagagaatgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006890 GO:0008150 GO:0012505 GO:0016192 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048193 GO:0051179 GO:0051234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1751

Protein Analysis

354

Amino Acids

39.33

Weight (kDa)

9.57

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015038)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07950
fragaria_vesca	FvH4_7g19770
malus_domestica	MD07G1176100.v1.1
prunus_persica	Prupe.8G142500_v2.0.a1
pyrus_communis	pycom01g13740 pycom07g17030
rosa_chinensis	RchiOBHm_Chr1g0363681
rosa_laevigata	RLG00000027552
rosa_multiflora	Rmu_sc0000548.1_g000013
rosa_roxburghii	Rroxscaffold_4G00293000
rosa_rugosa	Rorug01G0308500
rosa_samantha	Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana	Rw1G028160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	676
AccB1I	GGYRCC	1 cut(s)	710
AccII	CGCG	1 cut(s)	168
AciI	CCGC	4 cut(s)	5, 282, 356, 429
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	5 cut(s)	217, 223, 770, 830, 940
AcoI	YGGCCR	2 cut(s)	265, 272
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	1 cut(s)	900
AfaI	GTAC	1 cut(s)	1027
AfiI	CCNNNNNNNGG	4 cut(s)	327, 551, 915, 946
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	3 cut(s)	479, 542, 607
AjnI	CCWGG	2 cut(s)	431, 928
AjuI	GAANNNNNNNTTGG	2 cut(s)	180, 212
AluBI	AGCT	8 cut(s)	209, 391, 535, 617, 663, 674, 1001, 1036
AluI	AGCT	8 cut(s)	209, 391, 535, 617, 663, 674, 1001, 1036
Alw21I	GWGCWC	3 cut(s)	211, 293, 982
Alw26I	GTCTC	2 cut(s)	139, 817
AlwI	GGATC	5 cut(s)	217, 223, 770, 830, 940
AoxI	GGCC	4 cut(s)	265, 272, 318, 373
ApeKI	GCWGC	3 cut(s)	535, 998, 1016
ApoI	RAATTY	1 cut(s)	815
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	318, 361, 918
AsuHPI	GGTGA	3 cut(s)	191, 270, 785
AvaII	GGWCC	2 cut(s)	361, 918
BaeGI	GKGCMC	1 cut(s)	976
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	211
BauI	CACGAG	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	3 cut(s)	211, 293, 982
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	3 cut(s)	522, 1010, 1028
BccI	CCATC	5 cut(s)	7, 85, 283, 637, 864
BceAI	ACGGC	3 cut(s)	280, 287, 389
BciT130I	CCWGG	2 cut(s)	433, 930
BclI	TGATCA	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	139, 817
BfaI	CTAG	2 cut(s)	954, 995
BfrI	CTTAAG	1 cut(s)	767
BglII	AGATCT	1 cut(s)	875
BisI	GCNGC	3 cut(s)	536, 999, 1017
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	3 cut(s)	537, 1000, 1018
Bme1390I	CCNGG	2 cut(s)	433, 930
Bme18I	GGWCC	2 cut(s)	361, 918
BmgT120I	GGNCC	3 cut(s)	318, 361, 918
BmiI	GGNNCC	4 cut(s)	319, 455, 712, 919
BmrFI	CCNGG	2 cut(s)	433, 930
BmsI	GCATC	4 cut(s)	852, 854, 959, 1036
BpiI	GAAGAC	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	107
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	841
BsaBI	GATNNNNATC	2 cut(s)	95, 227
BsaI	GGTCTC	1 cut(s)	817
BsaJI	CCNNGG	2 cut(s)	898, 909
BsaWI	WCCGGW	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	4 cut(s)	327, 551, 915, 946
Bse1I	ACTGG	3 cut(s)	746, 827, 987
Bse3DI	GCAATG	2 cut(s)	651, 923
Bse8I	GATNNNNATC	2 cut(s)	95, 227
BseBI	CCWGG	2 cut(s)	433, 930
BseDI	CCNNGG	2 cut(s)	898, 909
BseGI	GGATG	4 cut(s)	96, 464, 845, 867
BseJI	GATNNNNATC	2 cut(s)	95, 227
BseLI	CCNNNNNNNGG	4 cut(s)	327, 551, 915, 946
BseMI	GCAATG	2 cut(s)	651, 923
BseMII	CTCAG	4 cut(s)	98, 217, 666, 993
BseNI	ACTGG	3 cut(s)	746, 827, 987
BseRI	GAGGAG	2 cut(s)	201, 383
BseSI	GKGCMC	1 cut(s)	976
BseX3I	CGGCCG	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	522, 1010, 1028
BseYI	CCCAGC	1 cut(s)	1036
BsgI	GTGCAG	1 cut(s)	1035
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	268
BshFI	GGCC	4 cut(s)	267, 274, 320, 375
BshNI	GGYRCC	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	268
BsiHKAI	GWGCWC	3 cut(s)	211, 293, 982
BsiSI	CCGG	1 cut(s)	468
BslFI	GGGAC	1 cut(s)	931
BslI	CCNNNNNNNGG	4 cut(s)	327, 551, 915, 946
BsmAI	GTCTC	2 cut(s)	139, 817
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	931
BsnI	GGCC	4 cut(s)	267, 274, 320, 375
Bso31I	GGTCTC	1 cut(s)	817
Bsp1286I	GDGCHC	4 cut(s)	211, 293, 976, 982
Bsp143I	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
Bsp1720I	GCTNAGC	1 cut(s)	352
BspACI	CCGC	4 cut(s)	5, 282, 356, 429
BspANI	GGCC	4 cut(s)	267, 274, 320, 375
BspCNI	CTCAG	4 cut(s)	99, 216, 667, 994
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	4 cut(s)	319, 455, 712, 919
BspPI	GGATC	5 cut(s)	217, 223, 770, 830, 940
BspQI	GCTCTTC	1 cut(s)	1026
BspT107I	GGYRCC	1 cut(s)	710
BspTI	CTTAAG	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	817
BsrDI	GCAATG	2 cut(s)	651, 923
BsrI	ACTGG	3 cut(s)	746, 827, 987
BssECI	CCNNGG	2 cut(s)	898, 909
BssMI	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
BssSI	CACGAG	1 cut(s)	975
BssT1I	CCWWGG	1 cut(s)	898
Bst2BI	CACGAG	1 cut(s)	975
Bst2UI	CCWGG	2 cut(s)	433, 930
Bst4CI	ACNGT	1 cut(s)	910
Bst6I	CTCTTC	2 cut(s)	1026, 1036
BstAFI	CTTAAG	1 cut(s)	767
BstDEI	CTNAG	7 cut(s)	107, 203, 352, 618, 675, 734, 1002
BstDSI	CCRYGG	1 cut(s)	909
BstEII	GGTNACC	1 cut(s)	624
BstF5I	GGATG	4 cut(s)	96, 464, 845, 867
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	7 cut(s)	225, 231, 240, 778, 838, 878, 935
BstMAI	GTCTC	2 cut(s)	139, 817
BstMBI	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
BstMCI	CGRYCG	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	680
BstNI	CCWGG	2 cut(s)	433, 930
BstPI	GGTNACC	1 cut(s)	624
BstSCI	CCNGG	2 cut(s)	431, 928
BstSLI	GKGCMC	1 cut(s)	976
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	3 cut(s)	522, 1010, 1028
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	2 cut(s)	875, 932
BstYI	RGATCY	2 cut(s)	875, 932
BstZI	CGGCCG	1 cut(s)	265
BsuRI	GGCC	4 cut(s)	267, 274, 320, 375
BtgI	CCRYGG	1 cut(s)	909
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	4 cut(s)	96, 464, 845, 867
BtsIMutI	CAGTG	1 cut(s)	980
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	318, 361, 918
Csp6I	GTAC	1 cut(s)	1026
CviAII	CATG	3 cut(s)	19, 286, 313
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	7 cut(s)	107, 203, 352, 618, 675, 734, 1002
DpnI	GATC	7 cut(s)	224, 230, 239, 777, 837, 877, 934
DpnII	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
DrdI	GACNNNNNNGTC	1 cut(s)	676
DseDI	GACNNNNNNGTC	1 cut(s)	676
EaeI	YGGCCR	2 cut(s)	265, 272
EagI	CGGCCG	1 cut(s)	265
Eam1104I	CTCTTC	2 cut(s)	1026, 1036
EarI	CTCTTC	2 cut(s)	1026, 1036
Ecl136II	GAGCTC	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	898
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	817
Eco47I	GGWCC	2 cut(s)	361, 918
Eco52I	CGGCCG	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	900
Eco91I	GGTNACC	1 cut(s)	624
EcoICRI	GAGCTC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	318
EcoO65I	GGTNACC	1 cut(s)	624
EcoRI	GAATTC	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	431, 928
EcoT14I	CCWWGG	1 cut(s)	898
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	898
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	3 cut(s)	22, 289, 316
FaqI	GGGAC	1 cut(s)	931
FatI	CATG	3 cut(s)	18, 285, 312
FauI	CCCGC	2 cut(s)	289, 436
FbaI	TGATCA	1 cut(s)	237
Fnu4HI	GCNGC	3 cut(s)	536, 999, 1017
FokI	GGATG	4 cut(s)	103, 451, 832, 874
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	3 cut(s)	536, 999, 1017
FspBI	CTAG	2 cut(s)	954, 995
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	3 cut(s)	536, 999, 1017
GsaI	CCCAGC	1 cut(s)	1040
HaeIII	GGCC	4 cut(s)	267, 274, 320, 375
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	3 cut(s)	22, 289, 316
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	661
HinfI	GANTC	4 cut(s)	47, 150, 439, 677
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	191, 270, 785
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188I	TCNGA	7 cut(s)	155, 206, 222, 246, 861, 880, 937
Hpy188III	TCNNGA	7 cut(s)	226, 364, 451, 667, 700, 820, 954
Hpy8I	GTNNAC	1 cut(s)	333
Hpy99I	CGWCG	2 cut(s)	273, 404
HpyAV	CCTTC	3 cut(s)	225, 331, 951
HpyCH4III	ACNGT	1 cut(s)	910
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	5 cut(s)	72, 345, 794, 845, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	680
HpyF3I	CTNAG	7 cut(s)	107, 203, 352, 618, 675, 734, 1002
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	22, 289, 316
HspAI	GCGC	1 cut(s)	168
Ksp22I	TGATCA	1 cut(s)	237
Kzo9I	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
LguI	GCTCTTC	1 cut(s)	1026
LmnI	GCTCC	2 cut(s)	214, 396
Lsp1109I	GCAGC	3 cut(s)	522, 1010, 1028
LweI	GCATC	4 cut(s)	852, 854, 959, 1036
MaeI	CTAG	2 cut(s)	954, 995
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	5 cut(s)	297, 406, 460, 470, 624
MalI	GATC	7 cut(s)	224, 230, 239, 777, 837, 877, 934
MboI	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
MboII	GAAGA	9 cut(s)	124, 509, 683, 797, 799, 885, 998, 1043, 1053
MflI	RGATCY	2 cut(s)	875, 932
MhlI	GDGCHC	4 cut(s)	211, 293, 976, 982
MluCI	AATT	2 cut(s)	188, 815
MlyI	GAGTC	2 cut(s)	144, 686
MmeI	TCCRAC	4 cut(s)	178, 269, 285, 704
MseI	TTAA	3 cut(s)	123, 570, 768
MslI	CAYNNNNRTG	1 cut(s)	716
MspA1I	CMGCKG	2 cut(s)	674, 1001
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	2 cut(s)	433, 930
MvaI	CCWGG	2 cut(s)	433, 930
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	680
NdeII	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
NlaIII	CATG	3 cut(s)	22, 289, 316
NlaIV	GGNNCC	4 cut(s)	319, 455, 712, 919
NmeAIII	GCCGAG	1 cut(s)	316
NmuCI	GTSAC	2 cut(s)	297, 460
PciSI	GCTCTTC	1 cut(s)	1026
PfeI	GAWTC	2 cut(s)	47, 439
PkrI	GCNGC	3 cut(s)	537, 1000, 1018
PleI	GAGTC	2 cut(s)	144, 685
PpsI	GAGTC	2 cut(s)	144, 685
Psp124BI	GAGCTC	1 cut(s)	211
Psp1406I	AACGTT	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	431, 928
PspEI	GGTNACC	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	1036
PspGI	CCWGG	2 cut(s)	431, 928
PspN4I	GGNNCC	4 cut(s)	319, 455, 712, 919
PspPI	GGNCC	3 cut(s)	318, 361, 918
PsuI	RGATCY	2 cut(s)	875, 932
PvuII	CAGCTG	2 cut(s)	674, 1001
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	1 cut(s)	716
SacI	GAGCTC	1 cut(s)	211
SapI	GCTCTTC	1 cut(s)	1026
SaqAI	TTAA	3 cut(s)	123, 570, 768
SatI	GCNGC	3 cut(s)	536, 999, 1017
Sau3AI	GATC	7 cut(s)	222, 228, 237, 775, 835, 875, 932
Sau96I	GGNCC	3 cut(s)	318, 361, 918
SchI	GAGTC	2 cut(s)	144, 686
ScrFI	CCNGG	2 cut(s)	433, 930
SduI	GDGCHC	4 cut(s)	211, 293, 976, 982
SfaNI	GCATC	4 cut(s)	852, 854, 959, 1036
SinI	GGWCC	2 cut(s)	361, 918
SmiMI	CAYNNNNRTG	1 cut(s)	716
SmlI	CTYRAG	2 cut(s)	767, 820
SmoI	CTYRAG	2 cut(s)	767, 820
Sse9I	AATT	2 cut(s)	188, 815
SsiI	CCGC	4 cut(s)	5, 282, 356, 429
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	2 cut(s)	954, 995
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	2 cut(s)	431, 928
StyI	CCWWGG	1 cut(s)	898
TaaI	ACNGT	1 cut(s)	910
TaiI	ACGT	1 cut(s)	120
TasI	AATT	2 cut(s)	188, 815
TfiI	GAWTC	2 cut(s)	47, 439
Tru1I	TTAA	3 cut(s)	123, 570, 768
Tru9I	TTAA	3 cut(s)	123, 570, 768
TscAI	CASTG	1 cut(s)	987
TseFI	GTSAC	2 cut(s)	297, 460
TseI	GCWGC	3 cut(s)	535, 998, 1016
Tsp45I	GTSAC	2 cut(s)	297, 460
TspDTI	ATGAA	3 cut(s)	47, 78, 906
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	987
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	361, 918
XapI	RAATTY	1 cut(s)	815
XbaI	TCTAGA	1 cut(s)	953
XspI	CTAG	2 cut(s)	954, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.