Rroxscaffold_4G00293000

Transmembrane protein 115-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015038
Physical Location & Seq
Reverse (-)
13245235 .. 13248794
3560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293000.1

Sequence Viewer

Length: 927 bp
ATGAGCACTCCGTCACTCGCAGGGGGCATGGGGGCCTTCTCTGGGTTCACTCGGCTATGCAAGGGCTTAGCGGTGGTCCTGATTGGAGGCCACATTGTTGTTCAGCTCCTCCCCGTCGCCGTTACTTACCTCGCCCTCATTCCCGCCAGGACGATTCCTTTTGTCTGGAACCTCGTCACATCCGGTTACATTGAACAATCAATATTTGGGGTTGTTGTAAGCACTCTTGGTCTTCTTTTTATAGGGAAGCTGCTTGAACCTGTCTGGGGTTCCAGGGAGTTCTTGAAGTTTATCTTTGTAGTTAACTTCCTAACTTCAATATGCATTTTCATCACTGCCATTGCGCTGTACTACATTACAAGGAAGGAAACTTATCTATATATGCCTCTTTCTGGCTTCCATGGAGTCCTTTCAGGTTTTTTGGTTGGCATTAAGCAAATGATACCTGACCAAGAGTTGCCTTTATTGAAAATAAAAGCTAAGTGGTTACCATCTCTCTCACTACTGCTGTCCATTGCTATAAGCTTCTGGACGGCTGAGTCAGCAACATATCTTCCAATCTTGATATTTGGCACCTATATGAGCTGGATTTACCTTAGATACTGGCAGAGAAAACCAGAAACAAAACTCAAGGGTGATCCAAGTGAAGATTTTGCATTTTCTACATTCTTCCCTGAATTATTGAGACCAGTCATTGATCCTGTTGCATCCATATTCCATCGGATGCTTTGTGGAAGATCTGAAGCCTCTAATGAAGCCCAAGGTTATACCGTGGGAGGGACCACATTGCCTGGATCTGACCCCATCGAGGCATCTAGAAGGAGGGAAAGAGGGGCACGAGCACTGGAAGAAAGACTAGCTGCTGAGAGATTGGGTGCAGCAACGGGTACAGAAGAGCTGGGAAGAGATGCCACAGAGAATGTATAG

Protein Analysis

308

Amino Acids

34.03

Weight (kDa)

8.69

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1751 PF08551 48 - 146 1.5e-34 Eukaryotic integral membrane protein (DUF1751)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015038)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07950
fragaria_vesca FvH4_7g19770
malus_domestica MD07G1176100.v1.1
prunus_persica Prupe.8G142500_v2.0.a1
pyrus_communis pycom01g13740 pycom07g17030
rosa_chinensis RchiOBHm_Chr1g0363681
rosa_laevigata RLG00000027552
rosa_multiflora Rmu_sc0000548.1_g000013
rosa_roxburghii Rroxscaffold_4G00293000
rosa_rugosa Rorug01G0308500
rosa_samantha Rh1AG317600 Rh1BG280900 Rh1CG297100 Rh1DG312100
rosa_wichuraiana Rw1G028160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 538
AccB1I GGYRCC 1 cut(s) 572
AciI CCGC 2 cut(s) 71, 144
AclWI GGATC 3 cut(s) 632, 692, 802
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 2 cut(s) 350, 889
AfiI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
AgsI TTSAA 5 cut(s) 194, 257, 286, 318, 469
AjnI CCWGG 3 cut(s) 146, 272, 790
AluBI AGCT 7 cut(s) 106, 250, 479, 525, 585, 860, 898
AluI AGCT 7 cut(s) 106, 250, 479, 525, 585, 860, 898
Alw21I GWGCWC 2 cut(s) 8, 844
Alw26I GTCTC 1 cut(s) 679
AlwI GGATC 3 cut(s) 632, 692, 802
AoxI GGCC 2 cut(s) 33, 88
ApeKI GCWGC 3 cut(s) 250, 860, 878
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 3 cut(s) 33, 76, 780
AsuHPI GGTGA 1 cut(s) 647
AvaII GGWCC 2 cut(s) 76, 780
BaeGI GKGCMC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 572
BauI CACGAG 1 cut(s) 837
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 8, 844
BbvI GCAGC 3 cut(s) 237, 847, 890
BccI CCATC 3 cut(s) 499, 726, 812
BceAI ACGGC 2 cut(s) 104, 549
BciT130I CCWGG 3 cut(s) 148, 274, 792
BcoDI GTCTC 1 cut(s) 679
BfaI CTAG 2 cut(s) 816, 857
BglII AGATCT 1 cut(s) 737
BisI GCNGC 3 cut(s) 251, 861, 879
BlpI GCTNAGC 1 cut(s) 67
BlsI GCNGC 3 cut(s) 252, 862, 880
Bme1390I CCNGG 3 cut(s) 148, 274, 792
Bme18I GGWCC 2 cut(s) 76, 780
BmgT120I GGNCC 3 cut(s) 33, 76, 780
BmiI GGNNCC 5 cut(s) 34, 170, 271, 574, 781
BmrFI CCNGG 3 cut(s) 148, 274, 792
BmsI GCATC 4 cut(s) 714, 716, 821, 898
BpiI GAAGAC 1 cut(s) 224
Bpu1102I GCTNAGC 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 614
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 4 cut(s) 273, 400, 760, 771
BsaWI WCCGGW 1 cut(s) 182
Bsc4I CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
Bse1I ACTGG 3 cut(s) 608, 689, 849
Bse3DI GCAATG 3 cut(s) 339, 513, 785
BseBI CCWGG 3 cut(s) 148, 274, 792
BseDI CCNNGG 4 cut(s) 273, 400, 760, 771
BseGI GGATG 3 cut(s) 179, 707, 729
BseLI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
BseMI GCAATG 3 cut(s) 339, 513, 785
BseMII CTCAG 2 cut(s) 528, 855
BseNI ACTGG 3 cut(s) 608, 689, 849
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 838
BseXI GCAGC 3 cut(s) 237, 847, 890
BseYI CCCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 897
BshFI GGCC 2 cut(s) 35, 90
BshNI GGYRCC 1 cut(s) 572
BsiHKAI GWGCWC 2 cut(s) 8, 844
BsiSI CCGG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 793
BslI CCNNNNNNNGG 5 cut(s) 42, 266, 392, 777, 808
BsmAI GTCTC 1 cut(s) 679
BsmFI GGGAC 1 cut(s) 793
BsnI GGCC 2 cut(s) 35, 90
Bso31I GGTCTC 1 cut(s) 679
Bsp1286I GDGCHC 3 cut(s) 8, 838, 844
Bsp143I GATC 4 cut(s) 637, 697, 737, 794
Bsp1720I GCTNAGC 1 cut(s) 67
Bsp19I CCATGG 1 cut(s) 400
BspACI CCGC 2 cut(s) 71, 144
BspANI GGCC 2 cut(s) 35, 90
BspCNI CTCAG 2 cut(s) 529, 856
BspLI GGNNCC 5 cut(s) 34, 170, 271, 574, 781
BspPI GGATC 3 cut(s) 632, 692, 802
BspQI GCTCTTC 1 cut(s) 888
BspT107I GGYRCC 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 679
BsrDI GCAATG 3 cut(s) 339, 513, 785
BsrI ACTGG 3 cut(s) 608, 689, 849
BssECI CCNNGG 4 cut(s) 273, 400, 760, 771
BssMI GATC 4 cut(s) 637, 697, 737, 794
BssSI CACGAG 1 cut(s) 837
BssT1I CCWWGG 2 cut(s) 400, 760
Bst2BI CACGAG 1 cut(s) 837
Bst2UI CCWGG 3 cut(s) 148, 274, 792
Bst4CI ACNGT 1 cut(s) 772
Bst6I CTCTTC 2 cut(s) 888, 898
BstDEI CTNAG 5 cut(s) 67, 480, 537, 596, 864
BstDSI CCRYGG 2 cut(s) 400, 771
BstEII GGTNACC 1 cut(s) 486
BstF5I GGATG 3 cut(s) 179, 707, 729
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 4 cut(s) 640, 700, 740, 797
BstMAI GTCTC 1 cut(s) 679
BstMBI GATC 4 cut(s) 637, 697, 737, 794
BstMWI GCNNNNNNNGC 1 cut(s) 542
BstNI CCWGG 3 cut(s) 148, 274, 792
BstPI GGTNACC 1 cut(s) 486
BstSCI CCNGG 3 cut(s) 146, 272, 790
BstSLI GKGCMC 1 cut(s) 838
BstV1I GCAGC 3 cut(s) 237, 847, 890
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 737, 794
BstYI RGATCY 2 cut(s) 737, 794
BsuRI GGCC 2 cut(s) 35, 90
BtgI CCRYGG 2 cut(s) 400, 771
BtsCI GGATG 3 cut(s) 179, 707, 729
BtsI GCAGTG 1 cut(s) 333
BtsIMutI CAGTG 2 cut(s) 333, 842
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 33, 76, 780
Csp6I GTAC 2 cut(s) 349, 888
CviAII CATG 2 cut(s) 28, 401
CviQI GTAC 2 cut(s) 349, 888
DdeI CTNAG 5 cut(s) 67, 480, 537, 596, 864
DpnI GATC 4 cut(s) 639, 699, 739, 796
DpnII GATC 4 cut(s) 637, 697, 737, 794
DrdI GACNNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 888, 898
EarI CTCTTC 2 cut(s) 888, 898
Eco130I CCWWGG 2 cut(s) 400, 760
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 2 cut(s) 76, 780
Eco57I CTGAAG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 33
EcoO65I GGTNACC 1 cut(s) 486
EcoRII CCWGG 3 cut(s) 146, 272, 790
EcoT14I CCWWGG 2 cut(s) 400, 760
EcoT22I ATGCAT 1 cut(s) 326
ErhI CCWWGG 2 cut(s) 400, 760
FaeI CATG 2 cut(s) 31, 404
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 793
FatI CATG 2 cut(s) 27, 400
FauI CCCGC 1 cut(s) 151
Fnu4HI GCNGC 3 cut(s) 251, 861, 879
FokI GGATG 3 cut(s) 166, 694, 736
Fsp4HI GCNGC 3 cut(s) 251, 861, 879
FspBI CTAG 2 cut(s) 816, 857
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 251, 861, 879
GsaI CCCAGC 1 cut(s) 902
HaeIII GGCC 2 cut(s) 35, 90
HapII CCGG 1 cut(s) 183
HhaI GCGC 1 cut(s) 346
Hin1II CATG 2 cut(s) 31, 404
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 523
HinfI GANTC 3 cut(s) 154, 405, 539
HpaI GTTAAC 1 cut(s) 304
HpaII CCGG 1 cut(s) 183
HphI GGTGA 1 cut(s) 647
Hpy166II GTNNAC 2 cut(s) 48, 304
Hpy188I TCNGA 3 cut(s) 723, 742, 799
Hpy188III TCNNGA 6 cut(s) 79, 166, 283, 529, 562, 816
Hpy8I GTNNAC 2 cut(s) 48, 304
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 3 cut(s) 46, 358, 813
HpyCH4III ACNGT 1 cut(s) 772
HpyCH4V TGCA 5 cut(s) 60, 324, 656, 707, 878
HpyF10VI GCNNNNNNNGC 1 cut(s) 542
HpyF3I CTNAG 5 cut(s) 67, 480, 537, 596, 864
Hsp92II CATG 2 cut(s) 31, 404
HspAI GCGC 1 cut(s) 344
KspAI GTTAAC 1 cut(s) 304
Kzo9I GATC 4 cut(s) 637, 697, 737, 794
LguI GCTCTTC 1 cut(s) 888
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 3 cut(s) 237, 847, 890
LweI GCATC 4 cut(s) 714, 716, 821, 898
MaeI CTAG 2 cut(s) 816, 857
MaeIII GTNAC 5 cut(s) 12, 121, 175, 185, 486
MalI GATC 4 cut(s) 639, 699, 739, 796
MboI GATC 4 cut(s) 637, 697, 737, 794
MboII GAAGA 8 cut(s) 224, 545, 659, 661, 747, 860, 905, 915
MflI RGATCY 2 cut(s) 737, 794
MhlI GDGCHC 3 cut(s) 8, 838, 844
MluCI AATT 1 cut(s) 677
MlyI GAGTC 2 cut(s) 414, 548
Mph1103I ATGCAT 1 cut(s) 326
MseI TTAA 2 cut(s) 303, 432
MslI CAYNNNNRTG 1 cut(s) 578
MspI CCGG 1 cut(s) 183
MspR9I CCNGG 3 cut(s) 148, 274, 792
MvaI CCWGG 3 cut(s) 148, 274, 792
MwoI GCNNNNNNNGC 1 cut(s) 542
NcoI CCATGG 1 cut(s) 400
NdeII GATC 4 cut(s) 637, 697, 737, 794
NlaIII CATG 2 cut(s) 31, 404
NlaIV GGNNCC 5 cut(s) 34, 170, 271, 574, 781
NmeAIII GCCGAG 1 cut(s) 31
NmuCI GTSAC 2 cut(s) 12, 175
NsiI ATGCAT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 888
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 3 cut(s) 252, 862, 880
PleI GAGTC 2 cut(s) 413, 547
PpsI GAGTC 2 cut(s) 413, 547
Psp6I CCWGG 3 cut(s) 146, 272, 790
PspEI GGTNACC 1 cut(s) 486
PspFI CCCAGC 1 cut(s) 898
PspGI CCWGG 3 cut(s) 146, 272, 790
PspN4I GGNNCC 5 cut(s) 34, 170, 271, 574, 781
PspPI GGNCC 3 cut(s) 33, 76, 780
PsuI RGATCY 2 cut(s) 737, 794
RsaI GTAC 2 cut(s) 350, 889
RsaNI GTAC 2 cut(s) 349, 888
RseI CAYNNNNRTG 1 cut(s) 578
SapI GCTCTTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 303, 432
SatI GCNGC 3 cut(s) 251, 861, 879
Sau3AI GATC 4 cut(s) 637, 697, 737, 794
Sau96I GGNCC 3 cut(s) 33, 76, 780
SchI GAGTC 2 cut(s) 414, 548
ScrFI CCNGG 3 cut(s) 148, 274, 792
SduI GDGCHC 3 cut(s) 8, 838, 844
SfaNI GCATC 4 cut(s) 714, 716, 821, 898
SinI GGWCC 2 cut(s) 76, 780
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 1 cut(s) 677
SsiI CCGC 2 cut(s) 71, 144
SspI AATATT 1 cut(s) 204
SspMI CTAG 2 cut(s) 816, 857
StyD4I CCNGG 3 cut(s) 146, 272, 790
StyI CCWWGG 2 cut(s) 400, 760
TaaI ACNGT 1 cut(s) 772
TaqI TCGA 1 cut(s) 807
TasI AATT 1 cut(s) 677
TatI WGTACW 1 cut(s) 348
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 303, 432
Tru9I TTAA 2 cut(s) 303, 432
TscAI CASTG 2 cut(s) 340, 849
TseFI GTSAC 2 cut(s) 12, 175
TseI GCWGC 3 cut(s) 250, 860, 878
Tsp45I GTSAC 2 cut(s) 12, 175
TspDTI ATGAA 2 cut(s) 319, 768
TspRI CASTG 2 cut(s) 340, 849
VpaK11BI GGWCC 2 cut(s) 76, 780
XbaI TCTAGA 1 cut(s) 815
XspI CTAG 2 cut(s) 816, 857
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.