AT3G08490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012261
Physical Location & Seq
Reverse (-)
2573840 .. 2575258
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G08490.1

Sequence Viewer

Length: 816 bp
ATGGAGAGAAGAGAGGACCACTACTCAAACTACTTCGTCCAAAGTCCTTCAACGGTTTTCCATGACCCTGAATCCGAATTCCAATCCCCGATTCGATCTGACTCAGCGCCATTGGTCCTATCCAGCGTCAATGAATTCCCGAGGTACTCAGATTTCTTGAGAAACTCCGAAAACAACTTCTTGTATGAGGATGATGAGAAAAGATTGGTGCCATTGGGGACCTCCAATTCGAGTTGGTGGATCGTCCTCCAAGTAGGTTGGAGGTTTTTGTTTAGCTTAGGAGTGGCATTGCTTGTCTTCTACATTGCTACTCAGCCTCCTCATCCTAACATTTCTTTTCGAATTGGGAGGTTTAATCAGTTCATGTTAGAAGAAGGTGTGGATTCACATGGAGTGTCGACTAAGTTCCTCACTTTCAATTGCTCTACCAAGCTCATAATAGATAACAAGTCTAATGTCTTTGGCCTTCACATTCATCCTCCATCTATCAAATTCTTCTTTGGCCCACTCAACTTTGCAAAGGCGCAAGGACCTAAACTATATGGGTTGAGCCATGAGTCGACAACATTTCAGCTATACATAGCAACAACGAACCGGGCGATGTATGGGGCGGGAACAGAGATGAATGATATGCTTCTGTCGAGAGCTGGATTGCCTCTAATACTGCGGACGAGTATAATTTCCGACTATCGAGTTGTCTGGAACATTATAAACCCTAAGTACCATCACAAAGTCGAGTGTTTATTGCTCCTTGCTGACAAGGAGAGGCACAGCCATGTTACAATGATAAGAGAAAAATGTAGATTGGTATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

31.22

Weight (kDa)

7.8

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 208
AccI GTMKAC 2 cut(s) 398, 560
AciI CCGC 2 cut(s) 611, 667
AclWI GGATC 1 cut(s) 248
AcsI RAATTY 3 cut(s) 77, 134, 491
AfaI GTAC 2 cut(s) 146, 722
AgsI TTSAA 2 cut(s) 51, 418
AjuI GAANNNNNNNTTGG 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 276, 433, 574, 647
AluI AGCT 4 cut(s) 276, 433, 574, 647
AlwI GGATC 1 cut(s) 248
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 2 cut(s) 463, 502
ApoI RAATTY 3 cut(s) 77, 134, 491
ArsI GACNNNNNNTTYG 2 cut(s) 211, 243
AspLEI GCGC 2 cut(s) 109, 526
AspS9I GGNCC 5 cut(s) 16, 115, 219, 503, 530
AsuC2I CCSGG 1 cut(s) 596
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 4 cut(s) 16, 115, 219, 530
BanI GGYRCC 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 289
BccI CCATC 2 cut(s) 490, 732
BcnI CCSGG 1 cut(s) 596
BfoI RGCGCY 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 596
Bme18I GGWCC 4 cut(s) 16, 115, 219, 530
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 5 cut(s) 16, 115, 219, 503, 530
BmiI GGNNCC 2 cut(s) 210, 220
BmrFI CCNGG 1 cut(s) 596
BpiI GAAGAC 1 cut(s) 289
Bpu10I CCTNAGC 1 cut(s) 277
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 596
BsaBI GATNNNNATC 1 cut(s) 808
BsaJI CCNNGG 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bse3DI GCAATG 2 cut(s) 287, 303
Bse8I GATNNNNATC 1 cut(s) 808
BseDI CCNNGG 1 cut(s) 140
BseGI GGATG 3 cut(s) 196, 322, 475
BseJI GATNNNNATC 1 cut(s) 808
BseMI GCAATG 2 cut(s) 287, 303
BseMII CTCAG 3 cut(s) 117, 162, 326
BseRI GAGGAG 1 cut(s) 309
BshFI GGCC 2 cut(s) 465, 504
BshNI GGYRCC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 232
BsnI GGCC 2 cut(s) 465, 504
BsoBI CYCGRG 1 cut(s) 139
Bsp119I TTCGAA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 95, 240
BspACI CCGC 2 cut(s) 611, 667
BspANI GGCC 2 cut(s) 465, 504
BspCNI CTCAG 3 cut(s) 116, 161, 325
BspLI GGNNCC 2 cut(s) 210, 220
BspPI GGATC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 287, 303
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 95, 240
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 4
BstBI TTCGAA 1 cut(s) 340
BstDEI CTNAG 6 cut(s) 103, 148, 277, 312, 402, 717
BstF5I GGATG 3 cut(s) 196, 322, 475
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 2 cut(s) 109, 526
BstKTI GATC 2 cut(s) 98, 243
BstMBI GATC 2 cut(s) 95, 240
BstSCI CCNGG 1 cut(s) 594
BstV2I GAAGAC 1 cut(s) 289
BsuRI GGCC 2 cut(s) 465, 504
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 3 cut(s) 196, 322, 475
CfoI GCGC 2 cut(s) 109, 526
Cfr13I GGNCC 5 cut(s) 16, 115, 219, 503, 530
CseI GACGC 1 cut(s) 115
Csp6I GTAC 2 cut(s) 145, 721
CviAII CATG 5 cut(s) 62, 364, 389, 554, 776
CviJI RGCY 9 cut(s) 276, 316, 433, 465, 504, 552, 574, 647, 774
CviKI_1 RGCY 9 cut(s) 276, 316, 433, 465, 504, 552, 574, 647, 774
CviQI GTAC 2 cut(s) 145, 721
DdeI CTNAG 6 cut(s) 103, 148, 277, 312, 402, 717
DpnI GATC 2 cut(s) 97, 242
DpnII GATC 2 cut(s) 95, 240
Eam1104I CTCTTC 1 cut(s) 4
EarI CTCTTC 1 cut(s) 4
Eco47I GGWCC 4 cut(s) 16, 115, 219, 530
Eco88I CYCGRG 1 cut(s) 139
EcoO109I RGGNCCY 2 cut(s) 219, 530
EcoRI GAATTC 2 cut(s) 77, 134
FaeI CATG 5 cut(s) 65, 367, 392, 557, 779
FaqI GGGAC 1 cut(s) 232
FatI CATG 5 cut(s) 61, 363, 388, 553, 775
FauI CCCGC 1 cut(s) 604
FblI GTMKAC 2 cut(s) 398, 560
FokI GGATG 3 cut(s) 203, 309, 462
GlaI GCGC 2 cut(s) 108, 525
HaeII RGCGCY 1 cut(s) 110
HaeIII GGCC 2 cut(s) 465, 504
HapII CCGG 1 cut(s) 595
HgaI GACGC 1 cut(s) 115
HhaI GCGC 2 cut(s) 109, 526
Hin1II CATG 5 cut(s) 65, 367, 392, 557, 779
Hin6I GCGC 2 cut(s) 107, 524
HinP1I GCGC 2 cut(s) 107, 524
HincII GTYRAC 2 cut(s) 399, 561
HindII GTYRAC 2 cut(s) 399, 561
HinfI GANTC 5 cut(s) 71, 91, 101, 383, 557
HpaII CCGG 1 cut(s) 595
Hpy166II GTNNAC 2 cut(s) 399, 561
Hpy188I TCNGA 5 cut(s) 76, 100, 151, 169, 685
Hpy188III TCNNGA 5 cut(s) 139, 157, 642, 700, 813
Hpy8I GTNNAC 2 cut(s) 399, 561
HpyAV CCTTC 3 cut(s) 57, 368, 476
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 518
HpyF3I CTNAG 6 cut(s) 103, 148, 277, 312, 402, 717
Hsp92II CATG 5 cut(s) 65, 367, 392, 557, 779
HspAI GCGC 2 cut(s) 107, 524
Kzo9I GATC 2 cut(s) 95, 240
LmnI GCTCC 1 cut(s) 753
LpnPI CCDG 5 cut(s) 81, 136, 608, 633, 685
MaeIII GTNAC 1 cut(s) 778
MalI GATC 2 cut(s) 97, 242
MboI GATC 2 cut(s) 95, 240
MboII GAAGA 4 cut(s) 21, 289, 383, 487
MfeI CAATTG 1 cut(s) 418
MluCI AATT 7 cut(s) 77, 134, 226, 342, 418, 491, 678
MlyI GAGTC 2 cut(s) 95, 566
MmeI TCCRAC 2 cut(s) 239, 708
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 774
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 596
MunI CAATTG 1 cut(s) 418
NciI CCSGG 1 cut(s) 596
NdeII GATC 2 cut(s) 95, 240
NlaIII CATG 5 cut(s) 65, 367, 392, 557, 779
NlaIV GGNNCC 2 cut(s) 210, 220
NspV TTCGAA 1 cut(s) 340
PcsI WCGNNNNNNNCGW 1 cut(s) 596
PfeI GAWTC 3 cut(s) 71, 91, 383
PleI GAGTC 2 cut(s) 95, 565
PpsI GAGTC 2 cut(s) 95, 565
PpuMI RGGWCCY 2 cut(s) 219, 530
PsiI TTATAA 1 cut(s) 710
Psp5II RGGWCCY 2 cut(s) 219, 530
PspN4I GGNNCC 2 cut(s) 210, 220
PspPI GGNCC 5 cut(s) 16, 115, 219, 503, 530
PspPPI RGGWCCY 2 cut(s) 219, 530
RsaI GTAC 2 cut(s) 146, 722
RsaNI GTAC 2 cut(s) 145, 721
RseI CAYNNNNRTG 1 cut(s) 774
SalI GTCGAC 2 cut(s) 397, 559
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 2 cut(s) 95, 240
Sau96I GGNCC 5 cut(s) 16, 115, 219, 503, 530
SchI GAGTC 2 cut(s) 95, 566
ScrFI CCNGG 1 cut(s) 596
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 4 cut(s) 16, 115, 219, 530
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 7 cut(s) 77, 134, 226, 342, 418, 491, 678
SsiI CCGC 2 cut(s) 611, 667
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 8 cut(s) 94, 230, 340, 398, 560, 641, 691, 735
TasI AATT 7 cut(s) 77, 134, 226, 342, 418, 491, 678
TfiI GAWTC 3 cut(s) 71, 91, 383
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TspDTI ATGAA 4 cut(s) 147, 352, 464, 638
VpaK11BI GGWCC 4 cut(s) 16, 115, 219, 530
XapI RAATTY 3 cut(s) 77, 134, 491
XmiI GTMKAC 2 cut(s) 398, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.