pycom07g00870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012261
Physical Location & Seq
Forward (+)
740291 .. 744470
4180 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g00870.3

Sequence Viewer

Length: 1032 bp
ATGGAGCATGATCAGGACGAAGAAGCTTTATTTCATCCATACCCTTGTCCATACTACGTGCAAAGCCCATCCGCCATTTCCCATTCCAACAGTGCCGATATTCGAAACACCATCCTGGAATCCGAATTCCACTCCCCAACACGACCCAATCCAGCAAACCGGACCCTCCACGACGAGGCCTCTTGCTTCACTCTATCACGCTACTCGTCCTCTCGTGGATCCAGTCACTCATTCCAGCACCAAAAAAAGATCTCCTTTGATGCACGTAGTAACGGCACAGGGACCGATAATTGCAAAAACCGTTTGGTTATTACCGTCAAAGGTGGTGGTTGTGGCAATGGCGGTGATGATCACGGTGATAATGAAGATGATGAGGAGGAGTATTGTTATGGGCTGGAGAACAGATCGGGGTGGTGGAAGAGGAATTGTTCATATCGAAATTCTGATTCGTTTGCATGGATATTTTTGCAAATAAGTTGGAGGGCAGTGTTGAGTTTGTGTATTGCACTGCTTGTGTTTTACGTTGCTACAAAGCCCCCACCACCCAAAGTGTCTATTCAGATGGCAGGAATTGGTCAATTTGGGCTTGGGGAAGGAGTGGATGGCTCGGGTGTCACAACTAAGTTCCTTACCAGCAATTGTTCCATAAATCTCATGATAGAGAACAAGTCTAAGCTCTTCGGCCTCCACATTCGTCCTCCAACAATGGAAATGTGCTTCGGACGGCTACCTTTTGCACTATCACATGGACCAAAGCTATATGCTGAGAGTGGATCATCAAGGTTCAAGTTATATGTTGGAACAAGGAATAAGCCTATGTATGGTGCCGGAAGAAGCATGGACGACATGCTCAAGTCAGGGAAGGGTTTGCCGTTGGTGCTTCGTGTGAGAGTGCGCTCAAGTTTTCGGGTCGTTTGGAATCTCATAAAACCTAAATTTCATCACCAAGCAGAGTGTTTTTTGGTCGTTGAAAGGGCATATGACAAAAAGCATCGTACTCAGTCGTACAATAGCACCTGCATAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.51

Weight (kDa)

8.88

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 824
AciI CCGC 2 cut(s) 72, 342
AclWI GGATC 3 cut(s) 213, 226, 781
AcsI RAATTY 3 cut(s) 125, 439, 935
AfaI GTAC 2 cut(s) 997, 1007
AfiI CCNNNNNNNGG 2 cut(s) 175, 821
AgsI TTSAA 2 cut(s) 787, 971
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 3 cut(s) 26, 676, 757
AluI AGCT 3 cut(s) 26, 676, 757
AlwI GGATC 3 cut(s) 213, 226, 781
Ama87I CYCGRG 1 cut(s) 607
AoxI GGCC 2 cut(s) 177, 682
ApoI RAATTY 3 cut(s) 125, 439, 935
AseI ATTAAT 1 cut(s) 1026
AspLEI GCGC 1 cut(s) 897
AspS9I GGNCC 3 cut(s) 162, 282, 749
AsuHPI GGTGA 3 cut(s) 356, 368, 935
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 607
AvaII GGWCC 3 cut(s) 162, 282, 749
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 213
BccI CCATC 4 cut(s) 76, 119, 556, 596
BceAI ACGGC 3 cut(s) 289, 740, 856
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 2 cut(s) 10, 349
BfuAI ACCTGC 1 cut(s) 1025
BglII AGATCT 1 cut(s) 249
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 3 cut(s) 162, 282, 749
BmeT110I CYCGRG 1 cut(s) 607
BmgT120I GGNCC 3 cut(s) 162, 282, 749
BmiI GGNNCC 4 cut(s) 164, 220, 283, 826
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 250, 1000
BpmI CTGGAG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 2 cut(s) 836, 883
BsaAI YACGTR 2 cut(s) 58, 266
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 821
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 4 cut(s) 34, 68, 111, 607
BseLI CCNNNNNNNGG 2 cut(s) 175, 821
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 756, 1013
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 389, 392
BshFI GGCC 2 cut(s) 179, 684
BshNI GGYRCC 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 607
BsiSI CCGG 2 cut(s) 160, 828
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 175, 821
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 2 cut(s) 179, 684
BsoBI CYCGRG 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 103
Bsp143I GATC 6 cut(s) 10, 218, 249, 349, 404, 773
BspACI CCGC 2 cut(s) 72, 342
BspANI GGCC 2 cut(s) 179, 684
BspCNI CTCAG 2 cut(s) 757, 1012
BspHI TCATGA 1 cut(s) 654
BspLI GGNNCC 4 cut(s) 164, 220, 283, 826
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 3 cut(s) 213, 226, 781
BspQI GCTCTTC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 222
BssMI GATC 6 cut(s) 10, 218, 249, 349, 404, 773
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 4 cut(s) 92, 302, 316, 356
Bst6I CTCTTC 2 cut(s) 413, 683
BstBAI YACGTR 2 cut(s) 58, 266
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 4 cut(s) 621, 672, 765, 999
BstF5I GGATG 4 cut(s) 34, 68, 111, 607
BstHHI GCGC 1 cut(s) 897
BstKTI GATC 6 cut(s) 13, 221, 252, 352, 407, 776
BstMBI GATC 6 cut(s) 10, 218, 249, 349, 404, 773
BstMWI GCNNNNNNNGC 1 cut(s) 877
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 2 cut(s) 218, 249
BstYI RGATCY 2 cut(s) 218, 249
BsuRI GGCC 2 cut(s) 179, 684
BtsCI GGATG 4 cut(s) 34, 68, 111, 607
BtsI GCAGTG 2 cut(s) 492, 506
BtsIMutI CAGTG 3 cut(s) 97, 492, 506
BveI ACCTGC 1 cut(s) 1025
CciI TCATGA 1 cut(s) 654
CfoI GCGC 1 cut(s) 897
Cfr13I GGNCC 3 cut(s) 162, 282, 749
Csp6I GTAC 2 cut(s) 996, 1006
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 6 cut(s) 8, 456, 655, 746, 838, 847
CviQI GTAC 2 cut(s) 996, 1006
DdeI CTNAG 4 cut(s) 621, 672, 765, 999
DpnI GATC 6 cut(s) 12, 220, 251, 351, 406, 775
DpnII GATC 6 cut(s) 10, 218, 249, 349, 404, 773
Eam1104I CTCTTC 2 cut(s) 413, 683
EarI CTCTTC 2 cut(s) 413, 683
EciI GGCGGA 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 3 cut(s) 162, 282, 749
Eco88I CYCGRG 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 11, 459, 658, 749, 841, 850
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 1 cut(s) 295
FatI CATG 6 cut(s) 7, 455, 654, 745, 837, 846
FauNDI CATATG 1 cut(s) 979
FbaI TGATCA 2 cut(s) 10, 349
FokI GGATG 4 cut(s) 21, 55, 98, 614
GlaI GCGC 1 cut(s) 896
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 2 cut(s) 179, 684
HapII CCGG 2 cut(s) 160, 828
HhaI GCGC 1 cut(s) 897
Hin1II CATG 6 cut(s) 11, 459, 658, 749, 841, 850
Hin6I GCGC 1 cut(s) 895
HinP1I GCGC 1 cut(s) 895
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 119, 446, 919
HpaII CCGG 2 cut(s) 160, 828
HphI GGTGA 3 cut(s) 356, 368, 935
Hpy188I TCNGA 4 cut(s) 124, 445, 561, 722
Hpy188III TCNNGA 2 cut(s) 14, 655
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 587, 856
HpyCH4III ACNGT 4 cut(s) 92, 302, 316, 356
HpyCH4IV ACGT 3 cut(s) 57, 265, 522
HpyCH4V TGCA 8 cut(s) 61, 263, 294, 455, 469, 506, 737, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 877
HpyF3I CTNAG 4 cut(s) 621, 672, 765, 999
HpySE526I ACGT 3 cut(s) 57, 265, 522
Hsp92II CATG 6 cut(s) 11, 459, 658, 749, 841, 850
HspAI GCGC 1 cut(s) 895
Ksp22I TGATCA 2 cut(s) 10, 349
Kzo9I GATC 6 cut(s) 10, 218, 249, 349, 404, 773
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 1 cut(s) 4
LweI GCATC 2 cut(s) 250, 1000
MaeII ACGT 3 cut(s) 57, 265, 522
MaeIII GTNAC 3 cut(s) 224, 269, 613
MalI GATC 6 cut(s) 12, 220, 251, 351, 406, 775
MboI GATC 6 cut(s) 10, 218, 249, 349, 404, 773
MboII GAAGA 5 cut(s) 32, 377, 430, 670, 843
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 2 cut(s) 218, 249
MmeI TCCRAC 4 cut(s) 111, 458, 725, 778
MseI TTAA 1 cut(s) 1026
MspI CCGG 2 cut(s) 160, 828
MspR9I CCNGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 877
NdeI CATATG 1 cut(s) 979
NdeII GATC 6 cut(s) 10, 218, 249, 349, 404, 773
NlaIII CATG 6 cut(s) 11, 459, 658, 749, 841, 850
NlaIV GGNNCC 4 cut(s) 164, 220, 283, 826
NmuCI GTSAC 2 cut(s) 224, 613
NspI RCATGY 1 cut(s) 850
NspV TTCGAA 1 cut(s) 103
PagI TCATGA 1 cut(s) 654
PaqCI CACCTGC 1 cut(s) 1025
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 119, 446, 919
PfoI TCCNGGA 1 cut(s) 114
Ppu21I YACGTR 2 cut(s) 58, 266
PshBI ATTAAT 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 4 cut(s) 164, 220, 283, 826
PspPI GGNCC 3 cut(s) 162, 282, 749
PsuI RGATCY 2 cut(s) 218, 249
RsaI GTAC 2 cut(s) 997, 1007
RsaNI GTAC 2 cut(s) 996, 1006
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 1 cut(s) 1026
Sau3AI GATC 6 cut(s) 10, 218, 249, 349, 404, 773
Sau96I GGNCC 3 cut(s) 162, 282, 749
ScrFI CCNGG 1 cut(s) 116
SfaNI GCATC 2 cut(s) 250, 1000
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 3 cut(s) 162, 282, 749
SmlI CTYRAG 2 cut(s) 851, 898
SmoI CTYRAG 2 cut(s) 851, 898
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 2 cut(s) 72, 342
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 4 cut(s) 92, 302, 316, 356
TaiI ACGT 3 cut(s) 60, 268, 525
TaqI TCGA 2 cut(s) 103, 436
TaqII GACCGA 1 cut(s) 299
TfiI GAWTC 3 cut(s) 119, 446, 919
Tru1I TTAA 1 cut(s) 1026
Tru9I TTAA 1 cut(s) 1026
TscAI CASTG 3 cut(s) 97, 492, 513
TseFI GTSAC 2 cut(s) 224, 613
Tsp45I GTSAC 2 cut(s) 224, 613
TspDTI ATGAA 4 cut(s) 23, 378, 420, 929
TspRI CASTG 3 cut(s) 97, 492, 513
VpaK11BI GGWCC 3 cut(s) 162, 282, 749
VspI ATTAAT 1 cut(s) 1026
XapI RAATTY 3 cut(s) 125, 439, 935
XceI RCATGY 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.