Rh1DG011100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012261
Physical Location & Seq
Forward (+)
1781079 .. 1784840
3762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG011100.1

Sequence Viewer

Length: 798 bp
ATGTCACAGCTCAGAAACAAAATGGAGCATGATCATGAAGCAGCTCTATTCCATTCATACCCTGCCTGTGCATACTACGTCCAGAGCCCATCCACCATCTCCCATGCTAACAGCACCCATATCCGAAACAGCACCATCCCCGAATCCGAATTCCAATTCAACTCCCCCGCCCGACCCGACCCAACAAACCCTACCCTTCAGGAGCAGGAAGCAGCCTCTCGAGCCTTTACTCTCTCGCACTACTCCTCCTCTCGAGGCTCCAGTCACTCCTTCTTGCATCACCAGAAAAAGATCTCTTACGATGCAGGTAGCCACGAAAATGGTGAGAACCGTTTGATTATTTTGGATGCCGGCGGCGATGATATTCATAATGGTGATGGTCATGACGATGATGATGAATATGATTATTACGGGATGAAGAAAAGATCAGGGTGGTGGAAGAGGTACTGTTCGTACCGGAATTCGGACTCGTGTGTGTGGATTTTCATGCAAATTAGTTGGAGGGCTATCTTGAGCTTCTGGGTTGCATTGCTTGTGTTTTACATCGCCACAAAGCCACCTCCACCCAAAGTATCTATTAAGATGGCAGGAATAGGGCAATTTGGGTTAGGGGAAGGAGTTGATGGTTCAGGTGTTTCAACTAAGTTCCTAACCTGCAATTGTTCCATAGACCTAATAATAGAGAACAAGTCTAAGCTCTTTGGACTTCGAATTCGTCCTCCAGTGATGGACGTCTCCTTCGGCCGCCTGTCTTTTGCATCATCACATGTAAGCATGCCAATTAAATTTGCTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.78

Weight (kDa)

7.22

Isoelectric Point (pI)

55.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 296, 662
AciI CCGC 3 cut(s) 168, 354, 745
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 4 cut(s) 149, 460, 711, 785
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 2 cut(s) 446, 455
AfiI CCNNNNNNNGG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 2 cut(s) 160, 639
AluBI AGCT 4 cut(s) 10, 44, 516, 697
AluI AGCT 4 cut(s) 10, 44, 516, 697
Alw26I GTCTC 1 cut(s) 739
Ama87I CYCGRG 2 cut(s) 219, 252
AoxI GGCC 1 cut(s) 742
ApeKI GCWGC 2 cut(s) 41, 212
ApoI RAATTY 4 cut(s) 149, 460, 711, 785
ArsI GACNNNNNNTTYG 4 cut(s) 696, 722, 728, 754
AsuHPI GGTGA 3 cut(s) 272, 335, 386
AsuII TTCGAA 1 cut(s) 709
AvaI CYCGRG 2 cut(s) 219, 252
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 469
BbvI GCAGC 2 cut(s) 53, 224
BccI CCATC 7 cut(s) 97, 104, 143, 371, 577, 617, 721
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 739
BfuAI ACCTGC 2 cut(s) 296, 662
BglII AGATCT 1 cut(s) 291
BisI GCNGC 4 cut(s) 42, 213, 355, 745
BlsI GCNGC 4 cut(s) 43, 214, 356, 746
BmeT110I CYCGRG 2 cut(s) 219, 252
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 4 cut(s) 286, 292, 337, 767
BpmI CTGGAG 2 cut(s) 244, 705
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 532
BsaHI GRCGYC 1 cut(s) 732
BsaWI WCCGGW 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 261, 722
Bse3DI GCAATG 1 cut(s) 527
BseGI GGATG 4 cut(s) 89, 135, 352, 420
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 25
BseNI ACTGG 2 cut(s) 261, 722
BseRI GAGGAG 2 cut(s) 235, 238
BseX3I CGGCCG 1 cut(s) 742
BseXI GCAGC 2 cut(s) 53, 224
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 1 cut(s) 744
BsiEI CGRYCG 1 cut(s) 745
BsiHKCI CYCGRG 2 cut(s) 219, 252
BsiSI CCGG 2 cut(s) 351, 457
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 739
BsmBI CGTCTC 1 cut(s) 739
BsnI GGCC 1 cut(s) 744
BsoBI CYCGRG 2 cut(s) 219, 252
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 3 cut(s) 31, 291, 425
BspACI CCGC 3 cut(s) 168, 354, 745
BspANI GGCC 1 cut(s) 744
BspCNI CTCAG 1 cut(s) 24
BspHI TCATGA 2 cut(s) 34, 382
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 2 cut(s) 296, 662
BspT104I TTCGAA 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 2 cut(s) 261, 722
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 3 cut(s) 31, 291, 425
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 2 cut(s) 332, 449
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 732
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 2 cut(s) 352, 776
BstDEI CTNAG 3 cut(s) 11, 642, 693
BstF5I GGATG 4 cut(s) 89, 135, 352, 420
BstKTI GATC 3 cut(s) 34, 294, 428
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 3 cut(s) 31, 291, 425
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 1 cut(s) 221
BstNSI RCATGY 2 cut(s) 770, 778
BstV1I GCAGC 2 cut(s) 53, 224
BstX2I RGATCY 1 cut(s) 291
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 291
BstZI CGGCCG 1 cut(s) 742
BsuRI GGCC 1 cut(s) 744
BtgZI GCGATG 2 cut(s) 372, 529
BtsCI GGATG 4 cut(s) 89, 135, 352, 420
BtsIMutI CAGTG 1 cut(s) 729
BveI ACCTGC 2 cut(s) 296, 662
Cac8I GCNNGC 2 cut(s) 352, 776
CciI TCATGA 2 cut(s) 34, 382
Cfr10I RCCGGY 1 cut(s) 350
Csp6I GTAC 2 cut(s) 445, 454
CviAII CATG 7 cut(s) 29, 35, 104, 383, 487, 767, 775
CviQI GTAC 2 cut(s) 445, 454
DdeI CTNAG 3 cut(s) 11, 642, 693
DpnI GATC 3 cut(s) 33, 293, 427
DpnII GATC 3 cut(s) 31, 291, 425
EaeI YGGCCR 1 cut(s) 742
EagI CGGCCG 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EclXI CGGCCG 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 89
Eco52I CGGCCG 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 2 cut(s) 219, 252
EcoRI GAATTC 3 cut(s) 149, 460, 711
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 7 cut(s) 32, 38, 107, 386, 490, 770, 778
FatI CATG 7 cut(s) 28, 34, 103, 382, 486, 766, 774
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 4 cut(s) 42, 213, 355, 745
FokI GGATG 4 cut(s) 76, 122, 359, 427
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 42, 213, 355, 745
GluI GCNGC 4 cut(s) 42, 213, 355, 745
GsuI CTGGAG 2 cut(s) 244, 705
HaeIII GGCC 1 cut(s) 744
HapII CCGG 2 cut(s) 351, 457
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 7 cut(s) 32, 38, 107, 386, 490, 770, 778
HinfI GANTC 2 cut(s) 143, 467
HpaII CCGG 2 cut(s) 351, 457
HphI GGTGA 3 cut(s) 272, 335, 386
Hpy188I TCNGA 4 cut(s) 14, 125, 148, 466
Hpy188III TCNNGA 7 cut(s) 35, 82, 200, 219, 252, 383, 511
HpyAV CCTTC 4 cut(s) 206, 280, 608, 748
HpyCH4III ACNGT 2 cut(s) 332, 449
HpyCH4IV ACGT 2 cut(s) 78, 732
HpyCH4V TGCA 7 cut(s) 71, 277, 305, 490, 527, 657, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 221
HpyF3I CTNAG 3 cut(s) 11, 642, 693
HpySE526I ACGT 2 cut(s) 78, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 7 cut(s) 32, 38, 107, 386, 490, 770, 778
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 291, 425
LmnI GCTCC 3 cut(s) 25, 202, 263
Lsp1109I GCAGC 2 cut(s) 53, 224
LweI GCATC 4 cut(s) 286, 292, 337, 767
MaeII ACGT 2 cut(s) 78, 732
MaeIII GTNAC 2 cut(s) 3, 263
MalI GATC 3 cut(s) 33, 293, 427
MboI GATC 3 cut(s) 31, 291, 425
MboII GAAGA 2 cut(s) 430, 451
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 1 cut(s) 291
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 9 cut(s) 149, 155, 460, 492, 599, 658, 711, 780, 785
MlyI GAGTC 1 cut(s) 461
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 8 cut(s) 226, 248, 256, 259, 435, 495, 570, 729
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 2 cut(s) 579, 783
MslI CAYNNNNRTG 4 cut(s) 33, 318, 372, 387
MspI CCGG 2 cut(s) 351, 457
MunI CAATTG 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 221
NaeI GCCGGC 1 cut(s) 352
NdeII GATC 3 cut(s) 31, 291, 425
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 7 cut(s) 32, 38, 107, 386, 490, 770, 778
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 2 cut(s) 3, 263
NspI RCATGY 2 cut(s) 770, 778
NspV TTCGAA 1 cut(s) 709
PaeI GCATGC 1 cut(s) 778
PaeR7I CTCGAG 2 cut(s) 219, 252
PagI TCATGA 2 cut(s) 34, 382
PciI ACATGT 1 cut(s) 766
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 43, 214, 356, 746
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
PscI ACATGT 1 cut(s) 766
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 291
RsaI GTAC 2 cut(s) 446, 455
RsaNI GTAC 2 cut(s) 445, 454
RseI CAYNNNNRTG 4 cut(s) 33, 318, 372, 387
SaqAI TTAA 2 cut(s) 579, 783
SatI GCNGC 4 cut(s) 42, 213, 355, 745
Sau3AI GATC 3 cut(s) 31, 291, 425
SchI GAGTC 1 cut(s) 461
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 4 cut(s) 286, 292, 337, 767
Sfr274I CTCGAG 2 cut(s) 219, 252
SfuI TTCGAA 1 cut(s) 709
SlaI CTCGAG 2 cut(s) 219, 252
SmiMI CAYNNNNRTG 4 cut(s) 33, 318, 372, 387
SmlI CTYRAG 3 cut(s) 219, 252, 511
SmoI CTYRAG 3 cut(s) 219, 252, 511
SphI GCATGC 1 cut(s) 778
Sse9I AATT 9 cut(s) 149, 155, 460, 492, 599, 658, 711, 780, 785
SsiI CCGC 3 cut(s) 168, 354, 745
TaaI ACNGT 2 cut(s) 332, 449
TaiI ACGT 2 cut(s) 81, 735
TaqI TCGA 3 cut(s) 220, 253, 709
TasI AATT 9 cut(s) 149, 155, 460, 492, 599, 658, 711, 780, 785
TauI GCSGC 2 cut(s) 357, 747
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 579, 783
Tru9I TTAA 2 cut(s) 579, 783
TscAI CASTG 1 cut(s) 729
TseFI GTSAC 2 cut(s) 3, 263
TseI GCWGC 2 cut(s) 41, 212
Tsp45I GTSAC 2 cut(s) 3, 263
TspDTI ATGAA 6 cut(s) 45, 51, 356, 411, 431, 475
TspRI CASTG 1 cut(s) 729
XapI RAATTY 4 cut(s) 149, 460, 711, 785
XceI RCATGY 2 cut(s) 770, 778
XhoI CTCGAG 2 cut(s) 219, 252
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.