Rh1AG018000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012261
Physical Location & Seq
Forward (+)
3080742 .. 3084721
3980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG018000.1

Sequence Viewer

Length: 1053 bp
ATGTCACAGCTCAGAAACAAAATGGAGCATGATCATGAAGCAGCTCTATTCCATTCATACCCTGCCTGTGCATACTACGTCCAGAGCCCATCCACCATCTCCCATGCTAACAGCGCCCATATCCGAAACAGCACCATCCCCGAATCCGAATTCCAATTCAACTCCCCCGCCCGACCCGACCCAACAAACCCTACCCTTCAGGAGCAGGAAGTAGCCTCTCGAGCCTTTACTCTCTCGCACTACTCCTCCTCTCGAGGATCCAGCCACTCCTTCTTGCATCACCAGAAAAAGATCTCTTACGATGCAGGTAGCCACGAAAATGGTGAGAACCGTTTGATTATTTTGGATGCCGGCGGCGATGATATTCATAATGGTGATGGTCGTGAAGATGATGATGAATATGATCATTACGGGATGAAGAAAAGATCAGGGTGGTGGAAGAGGTACTGTTCGTACCGGAATTCGGACTCGTGTGTGTGGATTTTCATGCAAATTAGTTGGAGGGCTATCTTGAGCTTCTGGGTTGCATTGCTTGTGTTTTATATCGCCACAAAGCCACCTCCACCCAAAGTATCTATTAAGATGGCAGGAATAGGGCAATTTGGGTTAGGGGAAGGAGTTGATGGTTCAGGTGTTTCAACTAAGTTCCTAACCTGCAATTGTTCCATAGACCTAATAATAGAGAACAAGTCTAAGCTCTTTGGACTTCGAATTCGTCCTCCAATGATGGACGTCTCCTTCGGCCGCCTGTCTTTTGCATCATCACATGGACCAAAGCTATATGCAGAACATGGGTCAACAAAGTTCAAGTTATATGTGGGAACAAGAAACAGGCCTATGTATGGTGCTGGAAGAAGCATGGAGGACATGTTAGAGTCAGGCAAAGGTTTGCCTTTGGTGGTTCGAGTCAGATTGCGCTCAAGTTTTCAAGTCGTTTGGAATCTGATAAAGCCTAAGTTCCATCACCAAGCTCAGTGCTCATTAGTCCTTGATCGGGCTTACGACAAAAGACATCGAACTCAGGCCTACAACAGCACCTGTATAATCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

39.61

Weight (kDa)

9.12

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 735
Acc36I ACCTGC 2 cut(s) 296, 662
AciI CCGC 3 cut(s) 168, 354, 745
AclWI GGATC 2 cut(s) 252, 265
AcoI YGGCCR 1 cut(s) 742
AcsI RAATTY 3 cut(s) 149, 460, 711
AcuI CTGAAG 1 cut(s) 182
AcyI GRCGYC 1 cut(s) 732
AfaI GTAC 2 cut(s) 446, 455
AfiI CCNNNNNNNGG 3 cut(s) 463, 842, 994
AflIII ACRYGT 1 cut(s) 867
AgsI TTSAA 4 cut(s) 160, 639, 808, 929
AluBI AGCT 6 cut(s) 10, 44, 516, 697, 778, 971
AluI AGCT 6 cut(s) 10, 44, 516, 697, 778, 971
Alw21I GWGCWC 1 cut(s) 980
Alw26I GTCTC 1 cut(s) 739
AlwI GGATC 2 cut(s) 252, 265
AlwNI CAGNNNCTG 1 cut(s) 1038
Ama87I CYCGRG 2 cut(s) 219, 252
AoxI GGCC 3 cut(s) 742, 833, 1023
ApeKI GCWGC 1 cut(s) 41
ApoI RAATTY 3 cut(s) 149, 460, 711
ArsI GACNNNNNNTTYG 4 cut(s) 696, 722, 728, 754
AspLEI GCGC 2 cut(s) 116, 918
AspS9I GGNCC 1 cut(s) 770
AsuHPI GGTGA 4 cut(s) 272, 335, 386, 956
AsuII TTCGAA 1 cut(s) 709
AvaI CYCGRG 2 cut(s) 219, 252
AvaII GGWCC 1 cut(s) 770
BamHI GGATCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 89
BauI CACGAG 1 cut(s) 469
Bbv12I GWGCWC 1 cut(s) 980
BbvI GCAGC 1 cut(s) 53
BccI CCATC 8 cut(s) 97, 104, 143, 371, 577, 617, 721, 969
BclI TGATCA 2 cut(s) 31, 403
BcoDI GTCTC 1 cut(s) 739
BfoI RGCGCY 1 cut(s) 117
BfuAI ACCTGC 2 cut(s) 296, 662
BglII AGATCT 1 cut(s) 291
BisI GCNGC 3 cut(s) 42, 355, 745
BlsI GCNGC 3 cut(s) 43, 356, 746
Bme18I GGWCC 1 cut(s) 770
BmeT110I CYCGRG 2 cut(s) 219, 252
BmgT120I GGNCC 1 cut(s) 770
BmiI GGNNCC 1 cut(s) 259
BmsI GCATC 4 cut(s) 286, 292, 337, 767
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 2 cut(s) 532, 904
BsaHI GRCGYC 1 cut(s) 732
BsaWI WCCGGW 1 cut(s) 456
BsaXI ACNNNNNCTCC 4 cut(s) 230, 260, 854, 884
Bsc4I CCNNNNNNNGG 3 cut(s) 463, 842, 994
Bse118I RCCGGY 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 527
BseGI GGATG 4 cut(s) 89, 135, 352, 420
BseLI CCNNNNNNNGG 3 cut(s) 463, 842, 994
BseMI GCAATG 1 cut(s) 527
BseMII CTCAG 3 cut(s) 25, 986, 1034
BseRI GAGGAG 2 cut(s) 235, 238
BseX3I CGGCCG 1 cut(s) 742
BseXI GCAGC 1 cut(s) 53
Bsh1285I CGRYCG 1 cut(s) 745
BshFI GGCC 3 cut(s) 744, 835, 1025
BsiEI CGRYCG 1 cut(s) 745
BsiHKAI GWGCWC 1 cut(s) 980
BsiHKCI CYCGRG 2 cut(s) 219, 252
BsiSI CCGG 2 cut(s) 351, 457
BslI CCNNNNNNNGG 3 cut(s) 463, 842, 994
BsmAI GTCTC 1 cut(s) 739
BsmBI CGTCTC 1 cut(s) 739
BsnI GGCC 3 cut(s) 744, 835, 1025
BsoBI CYCGRG 2 cut(s) 219, 252
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 2 cut(s) 89, 980
Bsp143I GATC 6 cut(s) 31, 257, 291, 403, 425, 991
BspACI CCGC 3 cut(s) 168, 354, 745
BspANI GGCC 3 cut(s) 744, 835, 1025
BspCNI CTCAG 3 cut(s) 24, 985, 1033
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 259
BspMI ACCTGC 2 cut(s) 296, 662
BspPI GGATC 2 cut(s) 252, 265
BspT104I TTCGAA 1 cut(s) 709
BsrDI GCAATG 1 cut(s) 527
BsrFI RCCGGY 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 350
BssMI GATC 6 cut(s) 31, 257, 291, 403, 425, 991
BssNI GRCGYC 1 cut(s) 732
BssSI CACGAG 1 cut(s) 469
Bst2BI CACGAG 1 cut(s) 469
Bst4CI ACNGT 2 cut(s) 332, 449
Bst6I CTCTTC 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 732
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 6 cut(s) 11, 642, 693, 954, 972, 1020
BstF5I GGATG 4 cut(s) 89, 135, 352, 420
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 2 cut(s) 116, 918
BstKTI GATC 6 cut(s) 34, 260, 294, 406, 428, 994
BstMAI GTCTC 1 cut(s) 739
BstMBI GATC 6 cut(s) 31, 257, 291, 403, 425, 991
BstMCI CGRYCG 1 cut(s) 745
BstMWI GCNNNNNNNGC 2 cut(s) 113, 221
BstNSI RCATGY 1 cut(s) 871
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 2 cut(s) 257, 291
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 2 cut(s) 257, 291
BstZI CGGCCG 1 cut(s) 742
BsuRI GGCC 3 cut(s) 744, 835, 1025
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 4 cut(s) 89, 135, 352, 420
BtsIMutI CAGTG 1 cut(s) 980
BveI ACCTGC 2 cut(s) 296, 662
Cac8I GCNNGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 1038
CciI TCATGA 1 cut(s) 34
CfoI GCGC 2 cut(s) 116, 918
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 770
Csp6I GTAC 2 cut(s) 445, 454
CviAII CATG 8 cut(s) 29, 35, 104, 487, 767, 791, 859, 868
CviQI GTAC 2 cut(s) 445, 454
DdeI CTNAG 6 cut(s) 11, 642, 693, 954, 972, 1020
DpnI GATC 6 cut(s) 33, 259, 293, 405, 427, 993
DpnII GATC 6 cut(s) 31, 257, 291, 403, 425, 991
EaeI YGGCCR 1 cut(s) 742
EagI CGGCCG 1 cut(s) 742
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
EclXI CGGCCG 1 cut(s) 742
Eco147I AGGCCT 2 cut(s) 835, 1025
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 770
Eco52I CGGCCG 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 182
Eco88I CYCGRG 2 cut(s) 219, 252
EcoRI GAATTC 3 cut(s) 149, 460, 711
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 739
FaeI CATG 8 cut(s) 32, 38, 107, 490, 770, 794, 862, 871
FatI CATG 8 cut(s) 28, 34, 103, 486, 766, 790, 858, 867
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 2 cut(s) 31, 403
Fnu4HI GCNGC 3 cut(s) 42, 355, 745
FokI GGATG 4 cut(s) 76, 122, 359, 427
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 3 cut(s) 42, 355, 745
GlaI GCGC 2 cut(s) 115, 917
GluI GCNGC 3 cut(s) 42, 355, 745
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 3 cut(s) 744, 835, 1025
HapII CCGG 2 cut(s) 351, 457
HhaI GCGC 2 cut(s) 116, 918
Hin1I GRCGYC 1 cut(s) 732
Hin1II CATG 8 cut(s) 32, 38, 107, 490, 770, 794, 862, 871
Hin6I GCGC 2 cut(s) 114, 916
HinP1I GCGC 2 cut(s) 114, 916
HincII GTYRAC 1 cut(s) 798
HindII GTYRAC 1 cut(s) 798
HinfI GANTC 5 cut(s) 143, 467, 875, 906, 940
HpaII CCGG 2 cut(s) 351, 457
HphI GGTGA 4 cut(s) 272, 335, 386, 956
Hpy166II GTNNAC 1 cut(s) 798
Hpy188I TCNGA 6 cut(s) 14, 125, 148, 466, 911, 945
Hpy188III TCNNGA 7 cut(s) 35, 82, 200, 219, 252, 383, 511
Hpy8I GTNNAC 1 cut(s) 798
HpyAV CCTTC 4 cut(s) 206, 280, 608, 748
HpyCH4III ACNGT 2 cut(s) 332, 449
HpyCH4IV ACGT 2 cut(s) 78, 732
HpyCH4V TGCA 8 cut(s) 71, 277, 305, 490, 527, 657, 758, 785
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 221
HpyF3I CTNAG 6 cut(s) 11, 642, 693, 954, 972, 1020
HpySE526I ACGT 2 cut(s) 78, 732
Hsp92I GRCGYC 1 cut(s) 732
Hsp92II CATG 8 cut(s) 32, 38, 107, 490, 770, 794, 862, 871
HspAI GCGC 2 cut(s) 114, 916
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 31, 403
Kzo9I GATC 6 cut(s) 31, 257, 291, 403, 425, 991
LmnI GCTCC 2 cut(s) 25, 202
Lsp1109I GCAGC 1 cut(s) 53
LweI GCATC 4 cut(s) 286, 292, 337, 767
MaeII ACGT 2 cut(s) 78, 732
MaeIII GTNAC 1 cut(s) 3
MalI GATC 6 cut(s) 33, 259, 293, 405, 427, 993
MboI GATC 6 cut(s) 31, 257, 291, 403, 425, 991
MboII GAAGA 4 cut(s) 398, 430, 451, 864
MfeI CAATTG 1 cut(s) 658
MflI RGATCY 2 cut(s) 257, 291
MhlI GDGCHC 2 cut(s) 89, 980
MluCI AATT 7 cut(s) 149, 155, 460, 492, 599, 658, 711
MlyI GAGTC 3 cut(s) 461, 884, 915
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 9 cut(s) 226, 248, 256, 259, 435, 495, 570, 729, 856
MroNI GCCGGC 1 cut(s) 350
MseI TTAA 2 cut(s) 579, 1051
MslI CAYNNNNRTG 3 cut(s) 33, 318, 372
MspI CCGG 2 cut(s) 351, 457
MunI CAATTG 1 cut(s) 658
MwoI GCNNNNNNNGC 2 cut(s) 113, 221
NaeI GCCGGC 1 cut(s) 352
NdeII GATC 6 cut(s) 31, 257, 291, 403, 425, 991
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 8 cut(s) 32, 38, 107, 490, 770, 794, 862, 871
NlaIV GGNNCC 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 871
NspV TTCGAA 1 cut(s) 709
PaeR7I CTCGAG 2 cut(s) 219, 252
PagI TCATGA 1 cut(s) 34
PceI AGGCCT 2 cut(s) 835, 1025
PciI ACATGT 1 cut(s) 867
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 143, 940
PkrI GCNGC 3 cut(s) 43, 356, 746
PleI GAGTC 3 cut(s) 461, 883, 914
PpsI GAGTC 3 cut(s) 461, 883, 914
PscI ACATGT 1 cut(s) 867
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 770
PstNI CAGNNNCTG 1 cut(s) 1038
PsuI RGATCY 2 cut(s) 257, 291
RsaI GTAC 2 cut(s) 446, 455
RsaNI GTAC 2 cut(s) 445, 454
RseI CAYNNNNRTG 3 cut(s) 33, 318, 372
SaqAI TTAA 2 cut(s) 579, 1051
SatI GCNGC 3 cut(s) 42, 355, 745
Sau3AI GATC 6 cut(s) 31, 257, 291, 403, 425, 991
Sau96I GGNCC 1 cut(s) 770
SchI GAGTC 3 cut(s) 461, 884, 915
SduI GDGCHC 2 cut(s) 89, 980
SfaNI GCATC 4 cut(s) 286, 292, 337, 767
Sfr274I CTCGAG 2 cut(s) 219, 252
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 770
SlaI CTCGAG 2 cut(s) 219, 252
SmiMI CAYNNNNRTG 3 cut(s) 33, 318, 372
SmlI CTYRAG 4 cut(s) 219, 252, 511, 919
SmoI CTYRAG 4 cut(s) 219, 252, 511, 919
Sse9I AATT 7 cut(s) 149, 155, 460, 492, 599, 658, 711
SseBI AGGCCT 2 cut(s) 835, 1025
SsiI CCGC 3 cut(s) 168, 354, 745
StuI AGGCCT 2 cut(s) 835, 1025
TaaI ACNGT 2 cut(s) 332, 449
TaiI ACGT 2 cut(s) 81, 735
TaqI TCGA 5 cut(s) 220, 253, 709, 904, 1015
TasI AATT 7 cut(s) 149, 155, 460, 492, 599, 658, 711
TauI GCSGC 2 cut(s) 357, 747
TfiI GAWTC 2 cut(s) 143, 940
Tru1I TTAA 2 cut(s) 579, 1051
Tru9I TTAA 2 cut(s) 579, 1051
TscAI CASTG 1 cut(s) 980
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 6 cut(s) 45, 51, 356, 411, 431, 475
TspRI CASTG 1 cut(s) 980
VpaK11BI GGWCC 1 cut(s) 770
XapI RAATTY 3 cut(s) 149, 460, 711
XceI RCATGY 1 cut(s) 871
XhoI CTCGAG 2 cut(s) 219, 252
ZraI GACGTC 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.