FvH4_7g01030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012261
Physical Location & Seq
Forward (+)
1444997 .. 1447825
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01030.t3

Sequence Viewer

Length: 1035 bp
ATGGAGCATGATCATGAAGCTACTCTATTCCATTCATACCCTGCTTATGCATACTATGTCCAGAGCCCATCCACCATCTCCCATGCCAACAGCGCCGATATCCGAAACAGCATCATCCCTGAATCCGAATTCCAATTCCACTCCCCCGCCCGACCCGACCCAACAAACCCTACCCTTCAGGAGCATGAAGTGGCCTCTCGGGCCTTCACTCTCTCGCACTACTCCTCCTCCCGCGGCTCCAGCCACTCCTTCTTGCATCACCAGAAAAAGATCTCTTACGACGCTGGTAGCCACGAAAATGGCGAGAACCGCTTGATTATTGTGGATGCCGGCGGCGATGATATTTGTAATGGTGATGGTCGTGACGACGATGATGATGAATATGATTATTACGGGATGAGAAAAAGATCAGGGTGGTGGAAGAGGTATTGTTCGTATCGAAACTCGGATTCGTGCGTGTGGATCTTCATTCAAATAAGTTGGAGGGCTATCTTGAGCTTCTGGGTTGCATTGCTTGTGTTTTACATCGCCACAAAGCCACCCCCACCCAAAGTATCTATTAAGATGGCAGGAATAGGGCAATTTGGGTTAGGGGAAGGAGTTGATGGCTCAGGTGTTTCAACTAAGTTCCTTACCTGCAATTGTTCCATAGACCTACTAATAGAGAACAAGTCTAAGATCTTTGGACTTCACATTCGCCCTCCAGCGATGGACGTCTCATTCGGTCCCCTGTCTTTTGCATCTTCACATGGACCAAAGCTATTTGCTGAGCGTGGGTCAACAAAGTTCAAGTTATATGTGGGAACAAGGAACAGGCCTATGTATGGTGCTGGAAGAAGCATGGAGGACATGTTAGAGTCAGGCAAGGGTTTGCCGTTGGTGGTTCAAGTCAGATTGCGCTCAAGTTTTCAAGTCGTTCGGAAACTGATCAAGCCCAAGTTCCATCACCAAGCTCGGTGCTCATTAGTCCTCAATCGGGCTTACGACAAAAAACATCGAACTCAAGCTTTCAACAGCAGCTGCATAATCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

38.74

Weight (kDa)

8.94

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 717
Acc36I ACCTGC 1 cut(s) 644
AccII CGCG 1 cut(s) 234
AciI CCGC 5 cut(s) 147, 232, 234, 310, 333
AclWI GGATC 1 cut(s) 470
AcsI RAATTY 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 161
AcyI GRCGYC 1 cut(s) 714
AfiI CCNNNNNNNGG 2 cut(s) 824, 976
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 6 cut(s) 473, 621, 790, 887, 911, 1012
AluBI AGCT 6 cut(s) 20, 498, 760, 953, 1007, 1020
AluI AGCT 6 cut(s) 20, 498, 760, 953, 1007, 1020
Alw21I GWGCWC 1 cut(s) 962
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 1 cut(s) 470
AlwNI CAGNNNCTG 1 cut(s) 1020
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 3 cut(s) 192, 201, 815
ApeKI GCWGC 2 cut(s) 1017, 1020
ApoI RAATTY 1 cut(s) 128
ArsI GACNNNNNNTTYG 4 cut(s) 678, 704, 710, 736
AspLEI GCGC 2 cut(s) 95, 900
AspS9I GGNCC 3 cut(s) 201, 725, 752
AsuHPI GGTGA 3 cut(s) 251, 365, 938
AvaI CYCGRG 1 cut(s) 198
AvaII GGWCC 2 cut(s) 725, 752
BanII GRGCYC 1 cut(s) 68
Bbv12I GWGCWC 1 cut(s) 962
BbvI GCAGC 2 cut(s) 1007, 1029
BccI CCATC 7 cut(s) 76, 83, 350, 559, 599, 703, 951
BceAI ACGGC 1 cut(s) 859
BclI TGATCA 2 cut(s) 10, 927
BcoDI GTCTC 1 cut(s) 721
BfoI RGCGCY 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 200
BglII AGATCT 2 cut(s) 270, 678
BisI GCNGC 4 cut(s) 235, 334, 1018, 1021
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 4 cut(s) 236, 335, 1019, 1022
Bme18I GGWCC 2 cut(s) 725, 752
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 3 cut(s) 201, 725, 752
BmiI GGNNCC 2 cut(s) 238, 727
BmsI GCATC 4 cut(s) 120, 265, 316, 749
BpmI CTGGAG 2 cut(s) 223, 687
Bpu10I CCTNAGC 1 cut(s) 610
Bpu1102I GCTNAGC 1 cut(s) 768
BpuEI CTTGAG 3 cut(s) 514, 886, 987
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 1 cut(s) 232
BsaXI ACNNNNNCTCC 6 cut(s) 209, 212, 239, 242, 836, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 824, 976
Bse118I RCCGGY 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 509
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 4 cut(s) 68, 114, 331, 402
BseLI CCNNNNNNNGG 2 cut(s) 824, 976
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 2 cut(s) 624, 759
BseRI GAGGAG 2 cut(s) 214, 217
BseXI GCAGC 2 cut(s) 1007, 1029
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 194, 203, 817
BsiHKAI GWGCWC 1 cut(s) 962
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 330
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 2 cut(s) 824, 976
BsmAI GTCTC 1 cut(s) 721
BsmBI CGTCTC 1 cut(s) 721
BsmFI GGGAC 1 cut(s) 711
BsnI GGCC 3 cut(s) 194, 203, 817
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 68, 962
Bsp143I GATC 6 cut(s) 10, 270, 407, 462, 678, 927
Bsp1720I GCTNAGC 1 cut(s) 768
BspACI CCGC 5 cut(s) 147, 232, 234, 310, 333
BspANI GGCC 3 cut(s) 194, 203, 817
BspCNI CTCAG 2 cut(s) 623, 760
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 238, 727
BspMI ACCTGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 470
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 6 cut(s) 10, 270, 407, 462, 678, 927
BssNI GRCGYC 1 cut(s) 714
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 714
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 4 cut(s) 610, 624, 675, 768
BstDSI CCRYGG 1 cut(s) 232
BstF5I GGATG 4 cut(s) 68, 114, 331, 402
BstFNI CGCG 1 cut(s) 234
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 2 cut(s) 95, 900
BstKTI GATC 6 cut(s) 13, 273, 410, 465, 681, 930
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 6 cut(s) 10, 270, 407, 462, 678, 927
BstMWI GCNNNNNNNGC 4 cut(s) 92, 200, 240, 309
BstNSI RCATGY 1 cut(s) 853
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 1007, 1029
BstX2I RGATCY 3 cut(s) 270, 462, 678
BstXI CCANNNNNNTGG 1 cut(s) 299
BstYI RGATCY 3 cut(s) 270, 462, 678
BsuRI GGCC 3 cut(s) 194, 203, 817
BtgI CCRYGG 1 cut(s) 232
BtgZI GCGATG 3 cut(s) 351, 511, 722
BtsCI GGATG 4 cut(s) 68, 114, 331, 402
BveI ACCTGC 1 cut(s) 644
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 1020
CciI TCATGA 1 cut(s) 13
CfoI GCGC 2 cut(s) 95, 900
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 3 cut(s) 201, 725, 752
Cfr42I CCGCGG 1 cut(s) 235
CseI GACGC 1 cut(s) 290
CviAII CATG 7 cut(s) 8, 14, 83, 185, 749, 841, 850
DdeI CTNAG 4 cut(s) 610, 624, 675, 768
DpnI GATC 6 cut(s) 12, 272, 409, 464, 680, 929
DpnII GATC 6 cut(s) 10, 270, 407, 462, 678, 927
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Eco147I AGGCCT 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 68
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 725, 752
Eco57I CTGAAG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 198
EcoRI GAATTC 1 cut(s) 128
EcoRV GATATC 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 7 cut(s) 11, 17, 86, 188, 752, 844, 853
FaqI GGGAC 1 cut(s) 711
FatI CATG 7 cut(s) 7, 13, 82, 184, 748, 840, 849
FauI CCCGC 2 cut(s) 154, 239
FbaI TGATCA 2 cut(s) 10, 927
Fnu4HI GCNGC 4 cut(s) 235, 334, 1018, 1021
FokI GGATG 4 cut(s) 55, 101, 338, 409
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 4 cut(s) 235, 334, 1018, 1021
GlaI GCGC 2 cut(s) 94, 899
GluI GCNGC 4 cut(s) 235, 334, 1018, 1021
GsuI CTGGAG 2 cut(s) 223, 687
HaeII RGCGCY 1 cut(s) 96
HaeIII GGCC 3 cut(s) 194, 203, 817
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 290
HhaI GCGC 2 cut(s) 95, 900
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 7 cut(s) 11, 17, 86, 188, 752, 844, 853
Hin6I GCGC 2 cut(s) 93, 898
HinP1I GCGC 2 cut(s) 93, 898
HincII GTYRAC 1 cut(s) 780
HindII GTYRAC 1 cut(s) 780
HindIII AAGCTT 1 cut(s) 1005
HinfI GANTC 3 cut(s) 122, 449, 857
HpaII CCGG 1 cut(s) 330
HphI GGTGA 3 cut(s) 251, 365, 938
Hpy166II GTNNAC 1 cut(s) 780
Hpy188I TCNGA 5 cut(s) 104, 127, 448, 893, 921
Hpy188III TCNNGA 5 cut(s) 14, 61, 179, 362, 493
Hpy8I GTNNAC 1 cut(s) 780
Hpy99I CGWCG 2 cut(s) 284, 371
HpyAV CCTTC 4 cut(s) 185, 214, 259, 590
HpyCH4IV ACGT 1 cut(s) 714
HpyCH4V TGCA 6 cut(s) 50, 256, 509, 639, 740, 1023
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 200, 240, 309
HpyF3I CTNAG 4 cut(s) 610, 624, 675, 768
HpySE526I ACGT 1 cut(s) 714
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 7 cut(s) 11, 17, 86, 188, 752, 844, 853
HspAI GCGC 2 cut(s) 93, 898
KroI GCCGGC 1 cut(s) 329
KroNI GCCGGC 1 cut(s) 331
Ksp22I TGATCA 2 cut(s) 10, 927
KspI CCGCGG 1 cut(s) 235
Kzo9I GATC 6 cut(s) 10, 270, 407, 462, 678, 927
LmnI GCTCC 3 cut(s) 4, 181, 242
Lsp1109I GCAGC 2 cut(s) 1007, 1029
LweI GCATC 4 cut(s) 120, 265, 316, 749
MaeII ACGT 1 cut(s) 714
MaeIII GTNAC 1 cut(s) 362
MalI GATC 6 cut(s) 12, 272, 409, 464, 680, 929
MboI GATC 6 cut(s) 10, 270, 407, 462, 678, 927
MboII GAAGA 4 cut(s) 433, 457, 735, 846
MfeI CAATTG 1 cut(s) 640
MflI RGATCY 3 cut(s) 270, 462, 678
MhlI GDGCHC 2 cut(s) 68, 962
MluCI AATT 4 cut(s) 128, 134, 581, 640
MlyI GAGTC 1 cut(s) 866
MmeI TCCRAC 1 cut(s) 461
MnlI CCTC 8 cut(s) 205, 235, 238, 417, 477, 711, 838, 980
Mph1103I ATGCAT 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 329
MseI TTAA 1 cut(s) 561
MslI CAYNNNNRTG 2 cut(s) 12, 297
MspA1I CMGCKG 2 cut(s) 234, 1020
MspI CCGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 640
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 4 cut(s) 92, 200, 240, 309
NaeI GCCGGC 1 cut(s) 331
NdeII GATC 6 cut(s) 10, 270, 407, 462, 678, 927
NgoMIV GCCGGC 1 cut(s) 329
NlaIII CATG 7 cut(s) 11, 17, 86, 188, 752, 844, 853
NlaIV GGNNCC 2 cut(s) 238, 727
NmuCI GTSAC 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 52
NspI RCATGY 1 cut(s) 853
PagI TCATGA 1 cut(s) 13
PceI AGGCCT 1 cut(s) 817
PciI ACATGT 1 cut(s) 849
PcsI WCGNNNNNNNCGW 1 cut(s) 300
PdiI GCCGGC 1 cut(s) 331
PfeI GAWTC 2 cut(s) 122, 449
PkrI GCNGC 4 cut(s) 236, 335, 1019, 1022
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
PscI ACATGT 1 cut(s) 849
PspN4I GGNNCC 2 cut(s) 238, 727
PspPI GGNCC 3 cut(s) 201, 725, 752
PstNI CAGNNNCTG 1 cut(s) 1020
PsuI RGATCY 3 cut(s) 270, 462, 678
PvuII CAGCTG 1 cut(s) 1020
RseI CAYNNNNRTG 2 cut(s) 12, 297
SacII CCGCGG 1 cut(s) 235
SaqAI TTAA 1 cut(s) 561
SatI GCNGC 4 cut(s) 235, 334, 1018, 1021
Sau3AI GATC 6 cut(s) 10, 270, 407, 462, 678, 927
Sau96I GGNCC 3 cut(s) 201, 725, 752
SchI GAGTC 1 cut(s) 866
SduI GDGCHC 2 cut(s) 68, 962
SfaNI GCATC 4 cut(s) 120, 265, 316, 749
SfiI GGCCNNNNNGGCC 1 cut(s) 200
Sfr303I CCGCGG 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 235
SinI GGWCC 2 cut(s) 725, 752
SmiMI CAYNNNNRTG 2 cut(s) 12, 297
SmlI CTYRAG 3 cut(s) 493, 901, 1002
SmoI CTYRAG 3 cut(s) 493, 901, 1002
Sse9I AATT 4 cut(s) 128, 134, 581, 640
SseBI AGGCCT 1 cut(s) 817
SsiI CCGC 5 cut(s) 147, 232, 234, 310, 333
StuI AGGCCT 1 cut(s) 817
TaiI ACGT 1 cut(s) 717
TaqI TCGA 2 cut(s) 439, 997
TaqII GACCGA 1 cut(s) 713
TasI AATT 4 cut(s) 128, 134, 581, 640
TauI GCSGC 2 cut(s) 237, 336
TfiI GAWTC 2 cut(s) 122, 449
Tru1I TTAA 1 cut(s) 561
Tru9I TTAA 1 cut(s) 561
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 1017, 1020
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 5 cut(s) 24, 30, 201, 393, 457
VpaK11BI GGWCC 2 cut(s) 725, 752
XapI RAATTY 1 cut(s) 128
XceI RCATGY 1 cut(s) 853
ZraI GACGTC 1 cut(s) 715
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.