Prupe.2G012900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012261
Physical Location & Seq
Forward (+)
1119058 .. 1122205
3148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G012900.1

Sequence Viewer

Length: 1122 bp
ATGTCAGAGTTACAATTCTGTCACTCACTCACTCACTCACTCTCTCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATGGAGCATGATCAAGACCAAGAAGCTCTATTTCATTCATACCCTTTTGCATATTACGTGCAAAGCCCATCAACTGTCTCCCATGCCAACAGTGCTGATATCCGGAACACCATCCCCGAATCTGAATTCCAATCCCCAACCCGAGCTGAACCAACAAACCCGACCCTTCACGAAGAGGCCTCCCGCTTCACTCTCTCACACTACTCCTCCTCCCGCGGATCCAGCCACTCATTCTTGCACCAGAAGAAGATCTCATACGACGCACGTAGCAACGGAACGGGCACCGAAAATGGAGTAAACCGTTTGATTATTGTGGACGGTGGTGGCAAGGGCGATGATGGTGGTGATGAAGATGATGATGAGGAATATTACTATGGTGTGAGAAAAACATCAAGGTGGTGGAAGACGTATTGTTCATATCGTAATTCAGATTCGTGTGTATGGATTTGTATGCAAATAAGTTGGAGGGCTATGTTGAGCTTGTGCGTTGCATTGCTTGTGTTTTACATTGCTACAAAGCCCCCTCCACCCAAAGTGTCAATTAAGATGGCAGGAATTGGCGAATTTGGACTAGGGGAAGGAGTGGATGGCTCGGGTGTCACCACTAAGATCCTCACCTGCAATTGTTCCATAAATCTAATAATAGACAACAAATCGAAGCTCTTTGGCCTTCACATTCATCCTCCAACAATCCAAATGCGCTTCGGCCGCTTACCTTTTGCTTTATCACATGGACCAAAGCTATATGCTGCTGAGAGTGGGTCATCAAAATTCAAGTTATATGCTGGAACAAGGAATAAGCCAATGTATGGTGCCGGAAGAAGCATGGAGGACATGCTAGAGTCAGGGAAGGGTTTGCCATTGGTCCTTCGAGTGAGTTTGCACTCAAGTTTTCATGTCGTTTGGAACCTTATTAAGCCTAAATTCCACCACCAAGCTGAATGCTTGCTTGTCCTTCATAGGGCATATGATAAAAAGCATCGCACTCAGACATACAATAGCACCTGCATAATGACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

374

Amino Acids

41.6

Weight (kDa)

8.29

Isoelectric Point (pI)

43.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 728, 1115
Acc36I ACCTGC 2 cut(s) 728, 1115
AccB1I GGYRCC 2 cut(s) 383, 914
AccB7I CCANNNNNTGG 1 cut(s) 911
AccII CGCG 1 cut(s) 318
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 4 cut(s) 286, 316, 318, 811
AclWI GGATC 3 cut(s) 315, 328, 706
AcoI YGGCCR 1 cut(s) 808
AcsI RAATTY 4 cut(s) 227, 665, 872, 1025
AfiI CCNNNNNNNGG 2 cut(s) 911, 1063
AgsI TTSAA 1 cut(s) 877
AluBI AGCT 6 cut(s) 128, 248, 582, 763, 844, 1040
AluI AGCT 6 cut(s) 128, 248, 582, 763, 844, 1040
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 3 cut(s) 315, 328, 706
Ama87I CYCGRG 2 cut(s) 243, 694
Aor13HI TCCGGA 1 cut(s) 204
AoxI GGCC 3 cut(s) 279, 769, 808
ApeKI GCWGC 1 cut(s) 851
ApoI RAATTY 4 cut(s) 227, 665, 872, 1025
AspLEI GCGC 1 cut(s) 804
AspS9I GGNCC 2 cut(s) 836, 967
AsuHPI GGTGA 3 cut(s) 458, 694, 709
AvaI CYCGRG 2 cut(s) 243, 694
AvaII GGWCC 2 cut(s) 836, 967
BaeGI GKGCMC 1 cut(s) 386
BamHI GGATCC 1 cut(s) 320
BanI GGYRCC 2 cut(s) 383, 914
BarI GAAGNNNNNNTAC 2 cut(s) 341, 373
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 1 cut(s) 838
BccI CCATC 5 cut(s) 178, 221, 434, 643, 683
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 2 cut(s) 674, 941
BfuAI ACCTGC 2 cut(s) 728, 1115
BglII AGATCT 1 cut(s) 351
BisI GCNGC 2 cut(s) 811, 852
BlsI GCNGC 2 cut(s) 812, 853
Bme18I GGWCC 2 cut(s) 836, 967
BmeT110I CYCGRG 2 cut(s) 243, 694
BmgT120I GGNCC 2 cut(s) 836, 967
BmiI GGNNCC 4 cut(s) 322, 385, 916, 1010
BmsI GCATC 1 cut(s) 1090
BpiI GAAGAC 1 cut(s) 512
BpuEI CTTGAG 1 cut(s) 973
BsaAI YACGTR 2 cut(s) 160, 368
BsaJI CCNNGG 1 cut(s) 316
BsaWI WCCGGW 1 cut(s) 204
BsaXI ACNNNNNCTCC 4 cut(s) 293, 296, 323, 326
Bsc4I CCNNNNNNNGG 2 cut(s) 911, 1063
Bse3DI GCAATG 2 cut(s) 593, 609
BseAI TCCGGA 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 3 cut(s) 213, 694, 781
BseLI CCNNNNNNNGG 2 cut(s) 911, 1063
BseMI GCAATG 2 cut(s) 593, 609
BseMII CTCAG 2 cut(s) 846, 1103
BseRI GAGGAG 2 cut(s) 298, 301
BseSI GKGCMC 1 cut(s) 386
BseX3I CGGCCG 1 cut(s) 808
BseXI GCAGC 1 cut(s) 838
Bsh1236I CGCG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 811
BshFI GGCC 3 cut(s) 281, 771, 810
BshNI GGYRCC 2 cut(s) 383, 914
BsiEI CGRYCG 1 cut(s) 811
BsiHKCI CYCGRG 2 cut(s) 243, 694
BsiSI CCGG 2 cut(s) 205, 918
BslI CCNNNNNNNGG 2 cut(s) 911, 1063
BsmAI GTCTC 1 cut(s) 184
BsmI GAATGC 1 cut(s) 1049
BsnI GGCC 3 cut(s) 281, 771, 810
BsoBI CYCGRG 2 cut(s) 243, 694
Bsp1286I GDGCHC 1 cut(s) 386
Bsp13I TCCGGA 1 cut(s) 204
Bsp143I GATC 4 cut(s) 112, 320, 351, 711
BspACI CCGC 4 cut(s) 286, 316, 318, 811
BspANI GGCC 3 cut(s) 281, 771, 810
BspCNI CTCAG 2 cut(s) 847, 1102
BspEI TCCGGA 1 cut(s) 204
BspFNI CGCG 1 cut(s) 318
BspLI GGNNCC 4 cut(s) 322, 385, 916, 1010
BspMI ACCTGC 2 cut(s) 728, 1115
BspPI GGATC 3 cut(s) 315, 328, 706
BspT107I GGYRCC 2 cut(s) 383, 914
BsrDI GCAATG 2 cut(s) 593, 609
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 4 cut(s) 112, 320, 351, 711
Bst4CI ACNGT 4 cut(s) 178, 194, 404, 422
Bst6I CTCTTC 1 cut(s) 270
BstBAI YACGTR 2 cut(s) 160, 368
BstC8I GCNNGC 1 cut(s) 1049
BstDEI CTNAG 4 cut(s) 708, 855, 1089, 1119
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 3 cut(s) 213, 694, 781
BstFNI CGCG 1 cut(s) 318
BstHHI GCGC 1 cut(s) 804
BstKTI GATC 4 cut(s) 115, 323, 354, 714
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 4 cut(s) 112, 320, 351, 711
BstMCI CGRYCG 1 cut(s) 811
BstMWI GCNNNNNNNGC 3 cut(s) 194, 324, 810
BstNSI RCATGY 1 cut(s) 940
BstSLI GKGCMC 1 cut(s) 386
BstUI CGCG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 838
BstV2I GAAGAC 1 cut(s) 512
BstX2I RGATCY 3 cut(s) 320, 351, 711
BstYI RGATCY 3 cut(s) 320, 351, 711
BstZI CGGCCG 1 cut(s) 808
BsuRI GGCC 3 cut(s) 281, 771, 810
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 2 cut(s) 450, 1067
BtsCI GGATG 3 cut(s) 213, 694, 781
BtsIMutI CAGTG 1 cut(s) 199
BveI ACCTGC 2 cut(s) 728, 1115
Cac8I GCNNGC 1 cut(s) 1049
CfoI GCGC 1 cut(s) 804
Cfr13I GGNCC 2 cut(s) 836, 967
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 371
CviAII CATG 7 cut(s) 103, 110, 185, 833, 928, 937, 998
DdeI CTNAG 4 cut(s) 708, 855, 1089, 1119
DpnI GATC 4 cut(s) 114, 322, 353, 713
DpnII GATC 4 cut(s) 112, 320, 351, 711
EaeI YGGCCR 1 cut(s) 808
EagI CGGCCG 1 cut(s) 808
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EclXI CGGCCG 1 cut(s) 808
Eco147I AGGCCT 1 cut(s) 281
Eco32I GATATC 1 cut(s) 202
Eco47I GGWCC 2 cut(s) 836, 967
Eco52I CGGCCG 1 cut(s) 808
Eco88I CYCGRG 2 cut(s) 243, 694
EcoRI GAATTC 1 cut(s) 227
EcoRV GATATC 1 cut(s) 202
FaeI CATG 7 cut(s) 106, 113, 188, 836, 931, 940, 1001
FatI CATG 7 cut(s) 102, 109, 184, 832, 927, 936, 997
FauI CCCGC 2 cut(s) 293, 323
FauNDI CATATG 1 cut(s) 1069
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 811, 852
FokI GGATG 3 cut(s) 200, 701, 768
Fsp4HI GCNGC 2 cut(s) 811, 852
FspBI CTAG 2 cut(s) 674, 941
GlaI GCGC 1 cut(s) 803
GluI GCNGC 2 cut(s) 811, 852
HaeIII GGCC 3 cut(s) 281, 771, 810
HapII CCGG 2 cut(s) 205, 918
HgaI GACGC 1 cut(s) 371
HhaI GCGC 1 cut(s) 804
Hin1II CATG 7 cut(s) 106, 113, 188, 836, 931, 940, 1001
Hin6I GCGC 1 cut(s) 802
HinP1I GCGC 1 cut(s) 802
HinfI GANTC 3 cut(s) 221, 533, 944
HpaII CCGG 2 cut(s) 205, 918
HphI GGTGA 3 cut(s) 458, 694, 709
Hpy166II GTNNAC 2 cut(s) 400, 418
Hpy188I TCNGA 4 cut(s) 7, 226, 532, 1092
Hpy188III TCNNGA 3 cut(s) 116, 205, 272
Hpy8I GTNNAC 2 cut(s) 400, 418
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 6 cut(s) 278, 674, 782, 946, 980, 1067
HpyCH4III ACNGT 4 cut(s) 178, 194, 404, 422
HpyCH4IV ACGT 3 cut(s) 159, 367, 509
HpyCH4V TGCA 8 cut(s) 152, 163, 340, 556, 593, 723, 985, 1110
HpyF10VI GCNNNNNNNGC 3 cut(s) 194, 324, 810
HpyF3I CTNAG 4 cut(s) 708, 855, 1089, 1119
HpySE526I ACGT 3 cut(s) 159, 367, 509
Hsp92II CATG 7 cut(s) 106, 113, 188, 836, 931, 940, 1001
HspAI GCGC 1 cut(s) 802
Kpn2I TCCGGA 1 cut(s) 204
Ksp22I TGATCA 1 cut(s) 112
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 4 cut(s) 112, 320, 351, 711
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 218, 337, 356, 639, 733, 873, 931, 933
Lsp1109I GCAGC 1 cut(s) 838
LweI GCATC 1 cut(s) 1090
MaeI CTAG 2 cut(s) 674, 941
MaeII ACGT 3 cut(s) 159, 367, 509
MaeIII GTNAC 3 cut(s) 9, 20, 700
MalI GATC 4 cut(s) 114, 322, 353, 713
MboI GATC 4 cut(s) 112, 320, 351, 711
MboII GAAGA 6 cut(s) 287, 358, 361, 464, 517, 933
MfeI CAATTG 1 cut(s) 724
MflI RGATCY 3 cut(s) 320, 351, 711
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 9 cut(s) 14, 227, 526, 642, 657, 665, 724, 872, 1025
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 2 cut(s) 545, 812
MroI TCCGGA 1 cut(s) 204
MseI TTAA 2 cut(s) 645, 1017
MslI CAYNNNNRTG 1 cut(s) 496
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 205, 918
MunI CAATTG 1 cut(s) 724
Mva1269I GAATGC 1 cut(s) 1049
MvnI CGCG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 194, 324, 810
NdeI CATATG 1 cut(s) 1069
NdeII GATC 4 cut(s) 112, 320, 351, 711
NlaIII CATG 7 cut(s) 106, 113, 188, 836, 931, 940, 1001
NlaIV GGNNCC 4 cut(s) 322, 385, 916, 1010
NmuCI GTSAC 2 cut(s) 20, 700
NspI RCATGY 1 cut(s) 940
PaqCI CACCTGC 2 cut(s) 728, 1115
PceI AGGCCT 1 cut(s) 281
PctI GAATGC 1 cut(s) 1049
PfeI GAWTC 2 cut(s) 221, 533
PflMI CCANNNNNTGG 1 cut(s) 911
PkrI GCNGC 2 cut(s) 812, 853
PleI GAGTC 1 cut(s) 952
PpsI GAGTC 1 cut(s) 952
Ppu21I YACGTR 2 cut(s) 160, 368
PspN4I GGNNCC 4 cut(s) 322, 385, 916, 1010
PspPI GGNCC 2 cut(s) 836, 967
PsuI RGATCY 3 cut(s) 320, 351, 711
RseI CAYNNNNRTG 1 cut(s) 496
SacII CCGCGG 1 cut(s) 319
SaqAI TTAA 2 cut(s) 645, 1017
SatI GCNGC 2 cut(s) 811, 852
Sau3AI GATC 4 cut(s) 112, 320, 351, 711
Sau96I GGNCC 2 cut(s) 836, 967
SchI GAGTC 1 cut(s) 953
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 1 cut(s) 1090
Sfr303I CCGCGG 1 cut(s) 319
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 2 cut(s) 836, 967
SmiMI CAYNNNNRTG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 988
SmoI CTYRAG 1 cut(s) 988
Sse9I AATT 9 cut(s) 14, 227, 526, 642, 657, 665, 724, 872, 1025
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 4 cut(s) 286, 316, 318, 811
SspI AATATT 1 cut(s) 470
SspMI CTAG 2 cut(s) 674, 941
StuI AGGCCT 1 cut(s) 281
TaaI ACNGT 4 cut(s) 178, 194, 404, 422
TaiI ACGT 3 cut(s) 162, 370, 512
TaqI TCGA 2 cut(s) 758, 973
TasI AATT 9 cut(s) 14, 227, 526, 642, 657, 665, 724, 872, 1025
TauI GCSGC 1 cut(s) 813
TfiI GAWTC 2 cut(s) 221, 533
Tru1I TTAA 2 cut(s) 645, 1017
Tru9I TTAA 2 cut(s) 645, 1017
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 2 cut(s) 20, 700
TseI GCWGC 1 cut(s) 851
Tsp45I GTSAC 2 cut(s) 20, 700
TspDTI ATGAA 7 cut(s) 125, 129, 465, 507, 770, 986, 1049
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 199
Van91I CCANNNNNTGG 1 cut(s) 911
VpaK11BI GGWCC 2 cut(s) 836, 967
XapI RAATTY 4 cut(s) 227, 665, 872, 1025
XceI RCATGY 1 cut(s) 940
XspI CTAG 2 cut(s) 674, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.