MD07G1010600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012261
Physical Location & Seq
Forward (+)
958592 .. 963290
4699 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1010600.v1.1.491

Sequence Viewer

Length: 1032 bp
ATGGAGCATGATCAGGAAGAAGAAGCTCTATTTCATTCATACCCTTGTCCATACTACGTGCAAAGCCCATCCGCCATCTCCCATTCCAACAGCGCGGATATTCGAAACACCATCCTGGAATCCGAATTTCACTCCCCAACACGACCCAATCCAGCAAACCGGACTCTCCACGAAGAGGCCTCTCGCTCCACTCTATCACGCTACTCGTCCTCTCGTGGATCCAGTCACTCATTCCAGCACCAAAAAAGGATCTCCTTTGATGCACGTAGTAACGGCACAGGGACCGATAATTGCAAAAACCGTTTGGTTATTGTCGTCAAAGGTGGTGGTTGTGGCAATGGCGGTGATGATCACGGTGACAATGAAGATGATGAGGAGGAGTATTGTTATGGGCTGGAGAACAGATCGGGGTGGTGGAAGAGGAATTGTTCATATCGAAATTCTGATTCGTTTGCATGGATATTTTTGCAAATAAGTTGGAGGGCTGTGTTGAGTTTGTGTATTGCACTGCTTGTGTTTTACGTTGCTACAAAGCCCCCACCACCCAAAGTGTCTATTCAGATGGCAGGAATTGGCCAATTTGGGCTTGGGGAAGGAGTGGATGGCTCGGGTGTCACGACTAAGTTCCTTACCAGCAATTGTTCTATAAATCTCATAATAGAGAACAAGTCTAAGCTCTTCGGCCTCCACATTCGTCCTCCAACAATGGAAATGTGCTTCGGACGGCTACCTTTTGCACAATCACATGGACCAAAGCTATATGCTGAGAGTGGGTCATCAAAGTTCAAGTTATATGTTGGAACAAGGAATAAGCCTATGTATGGTGCCGGAAGAAGCATGGACGACATGCTCGAGTCCGGGAAGGGTTTGCCGTTGGTGCTTCGTGTGAGAGTGCGCTCAAGTTTTCGGGTCGTTTGGAATCTCATAAAACCTAAATTTCATCACCAAGCAGAATGTTTTTTGGTCGTTGAAAGGGCGTATGACAAAAAGCATCGTACTCAGTCATACAATAGCACCTGCATAATTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

38.52

Weight (kDa)

8.83

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012261)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G08490
fragaria_vesca FvH4_7g01030 FvH4_7g01030 FvH4_7g01030
malus_domestica MD02G1312000.v1.1 MD07G1010600.v1.1
prunus_persica Prupe.2G012900_v2.0.a1
pyrus_communis pycom07g00870
rosa_chinensis RchiOBHm_Chr1g0315961
rosa_laevigata RLG00000030720
rosa_multiflora Rmu_sc0004566.1_g000003 Rmu_sc0005954.1_g000042
rosa_roxburghii Rroxscaffold_4G00331290
rosa_rugosa Rorug01G0007200
rosa_samantha Rh1AG018000 Rh1BG011000 Rh1CG015300 Rh1DG011100
rosa_wichuraiana Rw1G001100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1025
Acc36I ACCTGC 1 cut(s) 1025
AccB1I GGYRCC 1 cut(s) 824
AccII CGCG 1 cut(s) 95
AciI CCGC 3 cut(s) 72, 95, 342
AclWI GGATC 3 cut(s) 213, 226, 257
AcoI YGGCCR 1 cut(s) 574
AcsI RAATTY 3 cut(s) 125, 439, 935
AfaI GTAC 1 cut(s) 997
AfiI CCNNNNNNNGG 2 cut(s) 175, 821
AgsI TTSAA 2 cut(s) 787, 971
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 3 cut(s) 26, 676, 757
AluI AGCT 3 cut(s) 26, 676, 757
AlwI GGATC 3 cut(s) 213, 226, 257
Ama87I CYCGRG 2 cut(s) 607, 851
AoxI GGCC 3 cut(s) 177, 574, 682
ApoI RAATTY 3 cut(s) 125, 439, 935
AseI ATTAAT 1 cut(s) 1026
AspLEI GCGC 2 cut(s) 95, 897
AspS9I GGNCC 2 cut(s) 282, 749
AsuC2I CCSGG 1 cut(s) 859
AsuHPI GGTGA 3 cut(s) 356, 368, 935
AsuII TTCGAA 1 cut(s) 103
AvaI CYCGRG 2 cut(s) 607, 851
AvaII GGWCC 2 cut(s) 282, 749
BalI TGGCCA 1 cut(s) 576
BamHI GGATCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 213
BccI CCATC 5 cut(s) 76, 83, 119, 556, 596
BceAI ACGGC 3 cut(s) 289, 740, 856
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 2 cut(s) 10, 349
BcnI CCSGG 1 cut(s) 859
BfuAI ACCTGC 1 cut(s) 1025
Bme1390I CCNGG 2 cut(s) 116, 859
Bme18I GGWCC 2 cut(s) 282, 749
BmeT110I CYCGRG 2 cut(s) 607, 851
BmgT120I GGNCC 2 cut(s) 282, 749
BmiI GGNNCC 3 cut(s) 220, 283, 826
BmrFI CCNGG 2 cut(s) 116, 859
BmsI GCATC 2 cut(s) 250, 1000
BpmI CTGGAG 1 cut(s) 416
Bpu14I TTCGAA 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 1 cut(s) 859
BsaAI YACGTR 2 cut(s) 58, 266
BsaWI WCCGGW 1 cut(s) 159
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 821
Bse1I ACTGG 1 cut(s) 222
Bse3DI GCAATG 1 cut(s) 343
BseBI CCWGG 1 cut(s) 116
BseGI GGATG 3 cut(s) 68, 111, 607
BseLI CCNNNNNNNGG 2 cut(s) 175, 821
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 2 cut(s) 756, 1013
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 389, 392
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 3 cut(s) 179, 576, 684
BshNI GGYRCC 1 cut(s) 824
BsiHKCI CYCGRG 2 cut(s) 607, 851
BsiSI CCGG 3 cut(s) 160, 828, 858
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 175, 821
BsmFI GGGAC 1 cut(s) 295
BsnI GGCC 3 cut(s) 179, 576, 684
BsoBI CYCGRG 2 cut(s) 607, 851
Bsp119I TTCGAA 1 cut(s) 103
Bsp143I GATC 5 cut(s) 10, 218, 249, 349, 404
BspACI CCGC 3 cut(s) 72, 95, 342
BspANI GGCC 3 cut(s) 179, 576, 684
BspCNI CTCAG 2 cut(s) 757, 1012
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 3 cut(s) 220, 283, 826
BspMI ACCTGC 1 cut(s) 1025
BspPI GGATC 3 cut(s) 213, 226, 257
BspQI GCTCTTC 1 cut(s) 683
BspT104I TTCGAA 1 cut(s) 103
BspT107I GGYRCC 1 cut(s) 824
BsrDI GCAATG 1 cut(s) 343
BsrI ACTGG 1 cut(s) 222
BssMI GATC 5 cut(s) 10, 218, 249, 349, 404
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 302, 356
Bst6I CTCTTC 3 cut(s) 168, 413, 683
BstBAI YACGTR 2 cut(s) 58, 266
BstBI TTCGAA 1 cut(s) 103
BstDEI CTNAG 4 cut(s) 621, 672, 765, 999
BstF5I GGATG 3 cut(s) 68, 111, 607
BstFNI CGCG 1 cut(s) 95
BstHHI GCGC 2 cut(s) 95, 897
BstKTI GATC 5 cut(s) 13, 221, 252, 352, 407
BstMBI GATC 5 cut(s) 10, 218, 249, 349, 404
BstMWI GCNNNNNNNGC 1 cut(s) 877
BstNI CCWGG 1 cut(s) 116
BstNSI RCATGY 1 cut(s) 850
BstSCI CCNGG 2 cut(s) 114, 857
BstUI CGCG 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 218, 249
BstYI RGATCY 2 cut(s) 218, 249
BsuRI GGCC 3 cut(s) 179, 576, 684
BtsCI GGATG 3 cut(s) 68, 111, 607
BtsI GCAGTG 1 cut(s) 506
BtsIMutI CAGTG 1 cut(s) 506
BveI ACCTGC 1 cut(s) 1025
CfoI GCGC 2 cut(s) 95, 897
Cfr13I GGNCC 2 cut(s) 282, 749
Csp6I GTAC 1 cut(s) 996
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 5 cut(s) 8, 456, 746, 838, 847
CviQI GTAC 1 cut(s) 996
DdeI CTNAG 4 cut(s) 621, 672, 765, 999
DpnI GATC 5 cut(s) 12, 220, 251, 351, 406
DpnII GATC 5 cut(s) 10, 218, 249, 349, 404
EaeI YGGCCR 1 cut(s) 574
Eam1104I CTCTTC 3 cut(s) 168, 413, 683
EarI CTCTTC 3 cut(s) 168, 413, 683
EciI GGCGGA 1 cut(s) 61
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 2 cut(s) 282, 749
Eco88I CYCGRG 2 cut(s) 607, 851
EcoRII CCWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 11, 459, 749, 841, 850
FaqI GGGAC 1 cut(s) 295
FatI CATG 5 cut(s) 7, 455, 745, 837, 846
FbaI TGATCA 2 cut(s) 10, 349
FokI GGATG 3 cut(s) 55, 98, 614
GlaI GCGC 2 cut(s) 94, 896
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 3 cut(s) 179, 576, 684
HapII CCGG 3 cut(s) 160, 828, 858
HhaI GCGC 2 cut(s) 95, 897
Hin1II CATG 5 cut(s) 11, 459, 749, 841, 850
Hin6I GCGC 2 cut(s) 93, 895
HinP1I GCGC 2 cut(s) 93, 895
HinfI GANTC 5 cut(s) 119, 163, 446, 854, 919
HpaII CCGG 3 cut(s) 160, 828, 858
HphI GGTGA 3 cut(s) 356, 368, 935
Hpy188I TCNGA 4 cut(s) 124, 445, 561, 722
Hpy188III TCNNGA 2 cut(s) 14, 616
HpyAV CCTTC 2 cut(s) 587, 856
HpyCH4III ACNGT 2 cut(s) 302, 356
HpyCH4IV ACGT 3 cut(s) 57, 265, 522
HpyCH4V TGCA 8 cut(s) 61, 263, 294, 455, 469, 506, 737, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 877
HpyF3I CTNAG 4 cut(s) 621, 672, 765, 999
HpySE526I ACGT 3 cut(s) 57, 265, 522
Hsp92II CATG 5 cut(s) 11, 459, 749, 841, 850
HspAI GCGC 2 cut(s) 93, 895
Ksp22I TGATCA 2 cut(s) 10, 349
Kzo9I GATC 5 cut(s) 10, 218, 249, 349, 404
LguI GCTCTTC 1 cut(s) 683
LmnI GCTCC 2 cut(s) 4, 191
LweI GCATC 2 cut(s) 250, 1000
MaeII ACGT 3 cut(s) 57, 265, 522
MaeIII GTNAC 4 cut(s) 224, 269, 356, 613
MalI GATC 5 cut(s) 12, 220, 251, 351, 406
MboI GATC 5 cut(s) 10, 218, 249, 349, 404
MboII GAAGA 7 cut(s) 29, 32, 185, 377, 430, 670, 843
MfeI CAATTG 1 cut(s) 637
MflI RGATCY 2 cut(s) 218, 249
MlsI TGGCCA 1 cut(s) 576
MluNI TGGCCA 1 cut(s) 576
MlyI GAGTC 2 cut(s) 157, 863
MmeI TCCRAC 4 cut(s) 111, 458, 725, 778
MnlI CCTC 9 cut(s) 169, 190, 220, 367, 370, 414, 474, 695, 708
Mox20I TGGCCA 1 cut(s) 576
MscI TGGCCA 1 cut(s) 576
MseI TTAA 1 cut(s) 1026
Msp20I TGGCCA 1 cut(s) 576
MspI CCGG 3 cut(s) 160, 828, 858
MspR9I CCNGG 2 cut(s) 116, 859
MunI CAATTG 1 cut(s) 637
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 877
NciI CCSGG 1 cut(s) 859
NdeII GATC 5 cut(s) 10, 218, 249, 349, 404
NlaIII CATG 5 cut(s) 11, 459, 749, 841, 850
NlaIV GGNNCC 3 cut(s) 220, 283, 826
NmuCI GTSAC 3 cut(s) 224, 356, 613
NspI RCATGY 1 cut(s) 850
NspV TTCGAA 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 851
PaqCI CACCTGC 1 cut(s) 1025
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 683
PcsI WCGNNNNNNNCGW 2 cut(s) 614, 849
PfeI GAWTC 3 cut(s) 119, 446, 919
PfoI TCCNGGA 2 cut(s) 114, 857
PleI GAGTC 2 cut(s) 157, 862
PpsI GAGTC 2 cut(s) 157, 862
Ppu21I YACGTR 2 cut(s) 58, 266
PshBI ATTAAT 1 cut(s) 1026
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 3 cut(s) 220, 283, 826
PspPI GGNCC 2 cut(s) 282, 749
PspXI VCTCGAGB 1 cut(s) 851
PsuI RGATCY 2 cut(s) 218, 249
RsaI GTAC 1 cut(s) 997
RsaNI GTAC 1 cut(s) 996
SapI GCTCTTC 1 cut(s) 683
SaqAI TTAA 1 cut(s) 1026
Sau3AI GATC 5 cut(s) 10, 218, 249, 349, 404
Sau96I GGNCC 2 cut(s) 282, 749
SchI GAGTC 2 cut(s) 157, 863
ScrFI CCNGG 2 cut(s) 116, 859
SfaNI GCATC 2 cut(s) 250, 1000
Sfr274I CTCGAG 1 cut(s) 851
SfuI TTCGAA 1 cut(s) 103
SinI GGWCC 2 cut(s) 282, 749
SlaI CTCGAG 1 cut(s) 851
SmlI CTYRAG 2 cut(s) 851, 898
SmoI CTYRAG 2 cut(s) 851, 898
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 3 cut(s) 72, 95, 342
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 2 cut(s) 114, 857
TaaI ACNGT 2 cut(s) 302, 356
TaiI ACGT 3 cut(s) 60, 268, 525
TaqI TCGA 3 cut(s) 103, 436, 852
TaqII GACCGA 1 cut(s) 299
TfiI GAWTC 3 cut(s) 119, 446, 919
Tru1I TTAA 1 cut(s) 1026
Tru9I TTAA 1 cut(s) 1026
TscAI CASTG 1 cut(s) 513
TseFI GTSAC 3 cut(s) 224, 356, 613
Tsp45I GTSAC 3 cut(s) 224, 356, 613
TspDTI ATGAA 5 cut(s) 23, 27, 378, 420, 929
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 282, 749
VspI ATTAAT 1 cut(s) 1026
XapI RAATTY 3 cut(s) 125, 439, 935
XceI RCATGY 1 cut(s) 850
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XhoI CTCGAG 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.