AT3G08890

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009228
Physical Location & Seq
Forward (+)
2706534 .. 2708747
2214 bp
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UTR
Exon/CDS
Intron
AT3G08890.2

Sequence Viewer

Length: 513 bp
ATGGATCAGATCTTGAACAAGGTAGGCTCGTACTGGTTAGGTAAGAAGGCGAACAAGCAGCTCGATTCCGTCGGTGACGATATCAACTCTTTGTCTTCGAGCATCGAAGGAGGAACAAAATGGTTGGTGAACAAAATCAAAGGAAAAATGCAGAAGCCATTGCCCGAGTTACTAAAGGAGTTTGGTTTGCCTGTGGGGATCTTTCCACGTGATGCAACCAACTACGAGTTCAATGAACAGACGAGGAAGTTAACTGTCTTTATTCCATCAATCTGCGAAGTTGGTTACAAAGATACATCAGTCTTGAGATTCACCACTACAGTTACCGGATTTCTCGAGAAGGGAAAGCTAGCTGATGTTGAAGGGATGAAGACAAAAGTAATGATATGGGTTAAAGTCACAAGTATCTCTGCTGATTCTTCAAAGGTACATTTCACGGCAGGGATGAAGAAAAGCAGAAGCCGAGATGCTTATGAGGTTTTAAGAGATGGCGTTGAGATTGATAAATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

170

Amino Acids

19.03

Weight (kDa)

9.32

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 55 - 159 2.5e-29 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 12, 206
AcsI RAATTY 1 cut(s) 506
AcvI CACGTG 1 cut(s) 209
AfaI GTAC 2 cut(s) 32, 429
AgsI TTSAA 4 cut(s) 16, 232, 362, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 61, 349, 353
AluI AGCT 3 cut(s) 61, 349, 353
AlwI GGATC 2 cut(s) 12, 206
Ama87I CYCGRG 2 cut(s) 164, 335
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 506
AsuHPI GGTGA 3 cut(s) 86, 139, 304
AsuNHI GCTAGC 1 cut(s) 349
AvaI CYCGRG 2 cut(s) 164, 335
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BbrPI CACGTG 1 cut(s) 209
BbsI GAAGAC 2 cut(s) 87, 377
BbvI GCAGC 1 cut(s) 70
BccI CCATC 2 cut(s) 274, 482
BceAI ACGGC 1 cut(s) 453
BfaI CTAG 2 cut(s) 350, 511
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 9
BisI GCNGC 1 cut(s) 59
BlsI GCNGC 1 cut(s) 60
BmeT110I CYCGRG 2 cut(s) 164, 335
BmsI GCATC 3 cut(s) 111, 202, 457
BmtI GCTAGC 1 cut(s) 353
BpiI GAAGAC 2 cut(s) 87, 377
BpuEI CTTGAG 1 cut(s) 325
BsaAI YACGTR 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 158
BseGI GGATG 2 cut(s) 372, 450
BseMI GCAATG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 70
BsiHKCI CYCGRG 2 cut(s) 164, 335
BsiSI CCGG 1 cut(s) 327
BsoBI CYCGRG 2 cut(s) 164, 335
Bsp143I GATC 3 cut(s) 4, 9, 198
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 12, 206
BsrDI GCAATG 1 cut(s) 158
BsrI ACTGG 1 cut(s) 38
BssMI GATC 3 cut(s) 4, 9, 198
Bst4CI ACNGT 2 cut(s) 256, 322
BstBAI YACGTR 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 351
BstF5I GGATG 2 cut(s) 372, 450
BstKTI GATC 3 cut(s) 7, 12, 201
BstMBI GATC 3 cut(s) 4, 9, 198
BstSFI CTRYAG 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 87, 377
BstX2I RGATCY 2 cut(s) 9, 198
BstYI RGATCY 2 cut(s) 9, 198
BtsCI GGATG 2 cut(s) 372, 450
Cac8I GCNNGC 1 cut(s) 351
Csp6I GTAC 2 cut(s) 31, 428
CviJI RGCY 6 cut(s) 27, 61, 157, 349, 353, 462
CviKI_1 RGCY 6 cut(s) 27, 61, 157, 349, 353, 462
CviQI GTAC 2 cut(s) 31, 428
DpnI GATC 3 cut(s) 6, 11, 200
DpnII GATC 3 cut(s) 4, 9, 198
Eco32I GATATC 1 cut(s) 82
Eco72I CACGTG 1 cut(s) 209
Eco88I CYCGRG 2 cut(s) 164, 335
EcoRV GATATC 1 cut(s) 82
FaiI YATR 2 cut(s) 388, 474
Fnu4HI GCNGC 1 cut(s) 59
FokI GGATG 2 cut(s) 379, 457
Fsp4HI GCNGC 1 cut(s) 59
FspBI CTAG 2 cut(s) 350, 511
GluI GCNGC 1 cut(s) 59
HapII CCGG 1 cut(s) 327
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 3 cut(s) 65, 309, 416
HpaI GTTAAC 1 cut(s) 252
HpaII CCGG 1 cut(s) 327
HphI GGTGA 3 cut(s) 86, 139, 304
Hpy166II GTNNAC 2 cut(s) 130, 252
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 4 cut(s) 13, 304, 335, 337
Hpy8I GTNNAC 2 cut(s) 130, 252
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 40, 101, 334, 356
HpyCH4III ACNGT 2 cut(s) 256, 322
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 2 cut(s) 151, 215
HpySE526I ACGT 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 4, 9, 198
LpnPI CCDG 4 cut(s) 19, 204, 340, 426
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 3 cut(s) 111, 202, 457
MaeI CTAG 2 cut(s) 350, 511
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 5 cut(s) 74, 168, 284, 322, 397
MalI GATC 3 cut(s) 6, 11, 200
MboI GATC 3 cut(s) 4, 9, 198
MboII GAAGA 4 cut(s) 87, 382, 411, 460
MflI RGATCY 2 cut(s) 9, 198
MluCI AATT 1 cut(s) 506
MnlI CCTC 3 cut(s) 104, 237, 469
MseI TTAA 3 cut(s) 251, 393, 482
MspI CCGG 1 cut(s) 327
NdeII GATC 3 cut(s) 4, 9, 198
NheI GCTAGC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 2 cut(s) 74, 397
PaeR7I CTCGAG 1 cut(s) 335
PfeI GAWTC 3 cut(s) 65, 309, 416
PkrI GCNGC 1 cut(s) 60
PmaCI CACGTG 1 cut(s) 209
PmlI CACGTG 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 209
PspCI CACGTG 1 cut(s) 209
PsuI RGATCY 2 cut(s) 9, 198
RsaI GTAC 2 cut(s) 32, 429
RsaNI GTAC 2 cut(s) 31, 428
SaqAI TTAA 3 cut(s) 251, 393, 482
SatI GCNGC 1 cut(s) 59
Sau3AI GATC 3 cut(s) 4, 9, 198
SetI ASST 8 cut(s) 24, 43, 63, 211, 351, 355, 429, 480
SfaNI GCATC 3 cut(s) 111, 202, 457
SfcI CTRYAG 1 cut(s) 318
Sfr274I CTCGAG 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 304, 335
SmoI CTYRAG 2 cut(s) 304, 335
Sse9I AATT 1 cut(s) 506
SspMI CTAG 2 cut(s) 350, 511
TaaI ACNGT 2 cut(s) 256, 322
TaiI ACGT 1 cut(s) 211
TaqI TCGA 4 cut(s) 63, 98, 105, 336
TasI AATT 1 cut(s) 506
TfiI GAWTC 3 cut(s) 65, 309, 416
Tru1I TTAA 3 cut(s) 251, 393, 482
Tru9I TTAA 3 cut(s) 251, 393, 482
TseFI GTSAC 2 cut(s) 74, 397
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 2 cut(s) 74, 397
TspDTI ATGAA 3 cut(s) 249, 383, 461
TspGWI ACGGA 1 cut(s) 58
XapI RAATTY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 335
XspI CTAG 2 cut(s) 350, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.