Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009228

Physical Location & Seq

Genomic Coordinates Reverse (-)

26389913 .. 26392767

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G283900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATCAGATTTTGAACAAGGCGGGTTCCTACTGGTTCAGCCAGAAGGCCAACAAGGAGCTCACCTCCGTCGGGGATGATATAAACTCATTGCAAACTAGCATCGAAGGAGGAACCAAATGGTTGGTTAATAAACTCAAAGGAAAAATGCAAAAGCCATTGCCTGAGCTTCTAAAGGATTTTGACATGGCAGTAGGAATATTTCCTCGTGATGCTACCAACTATGAATTTAATGAGGAGACGGGAAAACTTACAGTCTACATACCGGCAGCCTGTGAAGTGGGCTACAGAGATTCATCTGTTTTACGTTTCTTCACCATTGTAACTGGATATTTGAAGAAAGGAAGGCTAGAAGACATCCAGGGGATGAAGACAAAGGTGATTATATGGGTAAATGTGTCCTGTATCACATCTGAGGGATCAAAGCTCCATTTCACAGCTGGGTTGAAGAGAACCAGGAATAGAGAGGCGTATGAGGTTCTTAGAGACGGCATCACTGTAGAGAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

171

Amino Acids

19.24

Weight (kDa)

8.98

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08890 AT3G08890 AT5G37070
fragaria_vesca	FvH4_6g10750 FvH4_6g10750
malus_domestica	MD04G1164700.v1.1 MD12G1178700.v1.1
prunus_persica	Prupe.6G283900_v2.0.a1
pyrus_communis	pycom04g14700 pycom12g16870
rosa_chinensis	RchiOBHm_Chr3g0461791
rosa_laevigata	RLG00000024898
rosa_multiflora	Rmu_sc0004308.1_g000011 Rmu_sc0007777.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417920
rosa_rugosa	Rorug03G0053600 Rorug03G0053700
rosa_samantha	Rh3AG111700 Rh3BG115000 Rh3CG117200 Rh3DG116700
rosa_wichuraiana	Rw3G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	12, 427
AcsI	RAATTY	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	3 cut(s)	16, 337, 448
AjnI	CCWGG	2 cut(s)	360, 455
AluBI	AGCT	4 cut(s)	61, 169, 427, 440
AluI	AGCT	4 cut(s)	61, 169, 427, 440
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	233, 480
AlwI	GGATC	2 cut(s)	12, 427
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	227
AsuHPI	GGTGA	3 cut(s)	55, 307, 391
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	360, 377
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	281
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	2 cut(s)	362, 457
BcoDI	GTCTC	2 cut(s)	233, 480
BfaI	CTAG	2 cut(s)	99, 350
BfmI	CTRYAG	2 cut(s)	286, 498
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme1390I	CCNGG	2 cut(s)	362, 457
BmiI	GGNNCC	2 cut(s)	28, 115
BmrFI	CCNGG	2 cut(s)	362, 457
BmsI	GCATC	3 cut(s)	111, 202, 501
BpiI	GAAGAC	2 cut(s)	360, 377
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	2 cut(s)	38, 331
Bse3DI	GCAATG	2 cut(s)	89, 158
BseBI	CCWGG	2 cut(s)	362, 457
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	3 cut(s)	82, 357, 372
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	2 cut(s)	89, 158
BseMII	CTCAG	2 cut(s)	156, 405
BseNI	ACTGG	2 cut(s)	38, 331
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	233, 480
BsmBI	CGTCTC	2 cut(s)	233, 480
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	2 cut(s)	4, 419
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	50
BspCNI	CTCAG	2 cut(s)	157, 406
BspLI	GGNNCC	2 cut(s)	28, 115
BspPI	GGATC	2 cut(s)	12, 427
BsrDI	GCAATG	2 cut(s)	89, 158
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	38, 331
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	2 cut(s)	4, 419
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	362, 457
Bst4CI	ACNGT	2 cut(s)	256, 499
Bst6I	CTCTTC	1 cut(s)	443
BstDEI	CTNAG	3 cut(s)	165, 414, 482
BstF5I	GGATG	3 cut(s)	82, 357, 372
BstKTI	GATC	2 cut(s)	7, 422
BstMAI	GTCTC	2 cut(s)	233, 480
BstMBI	GATC	2 cut(s)	4, 419
BstNI	CCWGG	2 cut(s)	362, 457
BstSCI	CCNGG	2 cut(s)	360, 455
BstSFI	CTRYAG	2 cut(s)	286, 498
BstV1I	GCAGC	1 cut(s)	281
BstV2I	GAAGAC	2 cut(s)	360, 377
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	1 cut(s)	50
BtsCI	GGATG	3 cut(s)	82, 357, 372
BtsIMutI	CAGTG	1 cut(s)	495
Cfr10I	RCCGGY	1 cut(s)	265
CviAII	CATG	1 cut(s)	187
DdeI	CTNAG	3 cut(s)	165, 414, 482
DpnI	GATC	2 cut(s)	6, 421
DpnII	GATC	2 cut(s)	4, 419
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	61
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	360, 455
EcoT38I	GRGCYC	1 cut(s)	63
Esp3I	CGTCTC	2 cut(s)	233, 480
FaeI	CATG	1 cut(s)	190
FaiI	YATR	7 cut(s)	83, 188, 225, 263, 386, 388, 474
FatI	CATG	1 cut(s)	186
FauI	CCCGC	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	3 cut(s)	89, 344, 379
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	2 cut(s)	99, 350
GluI	GCNGC	1 cut(s)	270
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	1 cut(s)	190
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	55, 307, 391
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	9, 415
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	40, 101, 339
HpyCH4III	ACNGT	2 cut(s)	256, 499
HpyCH4IV	ACGT	1 cut(s)	307
HpyCH4V	TGCA	2 cut(s)	94, 151
HpyF3I	CTNAG	3 cut(s)	165, 414, 482
HpySE526I	ACGT	1 cut(s)	307
Hsp92II	CATG	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	4, 419
LmnI	GCTCC	2 cut(s)	58, 432
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	3 cut(s)	111, 202, 501
MaeI	CTAG	2 cut(s)	99, 350
MaeII	ACGT	1 cut(s)	307
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	2 cut(s)	6, 421
MboI	GATC	2 cut(s)	4, 419
MboII	GAAGA	5 cut(s)	304, 349, 365, 382, 460
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	227
MnlI	CCTC	7 cut(s)	76, 104, 216, 229, 409, 460, 469
MseI	TTAA	3 cut(s)	129, 231, 511
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	362, 457
MvaI	CCWGG	2 cut(s)	362, 457
NdeII	GATC	2 cut(s)	4, 419
NlaIII	CATG	1 cut(s)	190
NlaIV	GGNNCC	2 cut(s)	28, 115
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	271
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	360, 455
PspFI	CCCAGC	1 cut(s)	440
PspGI	CCWGG	2 cut(s)	360, 455
PspN4I	GGNNCC	2 cut(s)	28, 115
PvuII	CAGCTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	129, 231, 511
SatI	GCNGC	1 cut(s)	270
Sau3AI	GATC	2 cut(s)	4, 419
ScrFI	CCNGG	2 cut(s)	362, 457
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	8 cut(s)	63, 68, 171, 310, 381, 429, 442, 480
SfaNI	GCATC	3 cut(s)	111, 202, 501
SfcI	CTRYAG	2 cut(s)	286, 498
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	1 cut(s)	201
SspMI	CTAG	2 cut(s)	99, 350
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	2 cut(s)	360, 455
TaaI	ACNGT	2 cut(s)	256, 499
TaiI	ACGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	3 cut(s)	129, 231, 511
Tru9I	TTAA	3 cut(s)	129, 231, 511
TscAI	CASTG	1 cut(s)	502
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	3 cut(s)	240, 285, 383
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	1 cut(s)	502
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	2 cut(s)	99, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.