Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009228

Physical Location & Seq

Genomic Coordinates Reverse (-)

19131555 .. 19133126

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGATCAGATTTTGAACAAGGCCGGATCCTACTGGTTCAACCAGAAGGCCACCAAGGAGCTCTCCTCCGTCGGGGATGACATCAACTCATTGCAAAGCAGTGTCGAAGGAGGAGCCAAATGGTTGGTTAATAAACTCAAAGGGAAAATGCAAAAGCCGTTGCCTGAGCTTCTAAAGGATTTTGACTTGGCAATAGGAATCTTTCCTCGTGATGCTACCAACTATGAGTTTAATGAGGAGACTGGGAAACTTACCGTCTACATACCGACTGTCTGTGAAGTGGGCTACAGAGATTCATCTGTTCTGCGTTTTTTCACCACTGTAACTGGATATTTGAAGAAAGGAAGGCTAGAAGACATACAGGGGATGAAGACTAAGGTGCTTATATGGGTAAATGTGTCATGCATCACATCAGAGGGATCGAAGCTCCATTTCACAGCTGGGTTGAAGAGAAGCAGGAGTAGAGAGGCTTATGAGGTTCAAAGAGACGGAATTACTGTTGAAAAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

171

Amino Acids

19.2

Weight (kDa)

8.98

Isoelectric Point (pI)

28.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08890 AT3G08890 AT5G37070
fragaria_vesca	FvH4_6g10750 FvH4_6g10750
malus_domestica	MD04G1164700.v1.1 MD12G1178700.v1.1
prunus_persica	Prupe.6G283900_v2.0.a1
pyrus_communis	pycom04g14700 pycom12g16870
rosa_chinensis	RchiOBHm_Chr3g0461791
rosa_laevigata	RLG00000024898
rosa_multiflora	Rmu_sc0004308.1_g000011 Rmu_sc0007777.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417920
rosa_rugosa	Rorug03G0053600 Rorug03G0053700
rosa_samantha	Rh3AG111700 Rh3BG115000 Rh3CG117200 Rh3DG116700
rosa_wichuraiana	Rw3G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AclWI	GGATC	4 cut(s)	12, 21, 34, 427
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	6 cut(s)	16, 40, 337, 448, 482, 503
AluBI	AGCT	4 cut(s)	61, 169, 427, 440
AluI	AGCT	4 cut(s)	61, 169, 427, 440
Alw21I	GWGCWC	1 cut(s)	63
Alw26I	GTCTC	2 cut(s)	233, 480
AlwI	GGATC	4 cut(s)	12, 21, 34, 427
AoxI	GGCC	2 cut(s)	21, 48
AsuHPI	GGTGA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	360, 377
Bbv12I	GWGCWC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	142
BcoDI	GTCTC	2 cut(s)	233, 480
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	28, 115
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	202, 414
BmuI	ACTGGG	1 cut(s)	252
BpiI	GAAGAC	2 cut(s)	360, 377
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
Bpu10I	CCTNAGC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	3 cut(s)	38, 247, 331
Bse3DI	GCAATG	1 cut(s)	89
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	82, 372
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	38, 247, 331
BseRI	GAGGAG	3 cut(s)	55, 126, 251
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	23, 50
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	233, 480
BsmBI	CGTCTC	1 cut(s)	480
BsnI	GGCC	2 cut(s)	23, 50
Bsp1286I	GDGCHC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	4, 26, 419
BspANI	GGCC	2 cut(s)	23, 50
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	2 cut(s)	28, 115
BspPI	GGATC	4 cut(s)	12, 21, 34, 427
BsrDI	GCAATG	1 cut(s)	89
BsrI	ACTGG	3 cut(s)	38, 247, 331
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	4, 26, 419
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	4 cut(s)	256, 271, 322, 499
Bst6I	CTCTTC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	165, 375
BstF5I	GGATG	2 cut(s)	82, 372
BstKTI	GATC	3 cut(s)	7, 29, 422
BstMAI	GTCTC	2 cut(s)	233, 480
BstMBI	GATC	3 cut(s)	4, 26, 419
BstSFI	CTRYAG	1 cut(s)	286
BstV2I	GAAGAC	2 cut(s)	360, 377
BstX2I	RGATCY	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	23, 50
BtsCI	GGATG	2 cut(s)	82, 372
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 318
CviAII	CATG	1 cut(s)	402
DdeI	CTNAG	2 cut(s)	165, 375
DpnI	GATC	3 cut(s)	6, 28, 421
DpnII	GATC	3 cut(s)	4, 26, 419
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Ecl136II	GAGCTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	1 cut(s)	63
Eco53kI	GAGCTC	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	407
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	480
FaeI	CATG	1 cut(s)	405
FaiI	YATR	7 cut(s)	225, 263, 359, 386, 388, 403, 474
FatI	CATG	1 cut(s)	401
FblI	GTMKAC	1 cut(s)	258
FokI	GGATG	2 cut(s)	89, 379
FriOI	GRGCYC	1 cut(s)	63
FspBI	CTAG	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	23, 50
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	405
HinfI	GANTC	2 cut(s)	198, 293
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	9, 415
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	3 cut(s)	40, 101, 339
HpyCH4III	ACNGT	4 cut(s)	256, 271, 322, 499
HpyCH4V	TGCA	3 cut(s)	94, 151, 405
HpyF3I	CTNAG	2 cut(s)	165, 375
Hsp92II	CATG	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	4, 26, 419
LmnI	GCTCC	3 cut(s)	58, 113, 432
LpnPI	CCDG	9 cut(s)	19, 37, 56, 177, 228, 312, 347, 426, 442
LweI	GCATC	2 cut(s)	202, 414
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	3 cut(s)	6, 28, 421
MboI	GATC	3 cut(s)	4, 26, 419
MboII	GAAGA	4 cut(s)	349, 365, 382, 460
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	63
MluCI	AATT	1 cut(s)	492
MnlI	CCTC	7 cut(s)	76, 104, 216, 229, 409, 460, 469
Mph1103I	ATGCAT	1 cut(s)	407
MseI	TTAA	3 cut(s)	129, 231, 511
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	4, 26, 419
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	2 cut(s)	28, 115
NsiI	ATGCAT	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	198, 293
Psp124BI	GAGCTC	1 cut(s)	63
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	28, 115
PsuI	RGATCY	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	63
SaqAI	TTAA	3 cut(s)	129, 231, 511
Sau3AI	GATC	3 cut(s)	4, 26, 419
SduI	GDGCHC	1 cut(s)	63
SetI	ASST	6 cut(s)	63, 171, 381, 429, 442, 480
SfaNI	GCATC	2 cut(s)	202, 414
SfcI	CTRYAG	1 cut(s)	286
Sse9I	AATT	1 cut(s)	492
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	63
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	4 cut(s)	256, 271, 322, 499
TaqI	TCGA	2 cut(s)	105, 422
TasI	AATT	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	198, 293
Tru1I	TTAA	3 cut(s)	129, 231, 511
Tru9I	TTAA	3 cut(s)	129, 231, 511
TscAI	CASTG	2 cut(s)	106, 325
TspDTI	ATGAA	2 cut(s)	285, 383
TspGWI	ACGGA	2 cut(s)	58, 504
TspRI	CASTG	2 cut(s)	106, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.