Rh3AG111700

At5g01610-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0009228
Physical Location & Seq
Forward (+)
9470807 .. 9473927
3121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG111700.1

Sequence Viewer

Length: 369 bp
ATGCAAAAGCCATTGCCTGAGCTTCTTAAGGAGTATGACCTCGCAGTAGGAATCTTTCCTCGGGATGCTACAAACTATGAATTCAATCAGGAGACAGGAAAACTTACCGTCTACATACCCTCAGTCTGTGAAGTGGGCTATAGGGATTCGTCTGTTTTGCGGTTTTTCACGACTGTGACTGGATACTTGAAGAAAGGAAAGCTAGAAGACATTCAGGGGATCAAGACAAAGGTGACCTTACTATGGGTAAAAGTGACCTCCATCTCGTCTGGGGGATCGAAGCTTAATTTCCAGGCTGGGATGAACAGAAGCAGGAGTAGAGAGGCTTATGAGGTTTCTAGAGACGGAATAACCGTAGACAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

122

Amino Acids

13.77

Weight (kDa)

9.21

Isoelectric Point (pI)

15.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 6 - 111 1.2e-29 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 111, 357
AciI CCGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 227, 283
AcsI RAATTY 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 243
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 85, 190
AjnI CCWGG 1 cut(s) 291
AleI CACNNNNGTG 1 cut(s) 173
AluBI AGCT 3 cut(s) 22, 202, 283
AluI AGCT 3 cut(s) 22, 202, 283
Alw26I GTCTC 2 cut(s) 86, 336
AlwI GGATC 2 cut(s) 227, 283
Ama87I CYCGRG 1 cut(s) 60
ApoI RAATTY 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 244
AvaI CYCGRG 1 cut(s) 60
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 1 cut(s) 269
BciT130I CCWGG 1 cut(s) 293
BciVI GTATCC 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 86, 336
BfaI CTAG 2 cut(s) 203, 339
BfmI CTRYAG 1 cut(s) 139
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 293
BmeT110I CYCGRG 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 11
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 2 cut(s) 70, 306
BseLI CCNNNNNNNGG 1 cut(s) 243
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 9, 135
BseNI ACTGG 1 cut(s) 184
BseYI CCCAGC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 243
BsmAI GTCTC 2 cut(s) 86, 336
BsmBI CGTCTC 1 cut(s) 336
BsoBI CYCGRG 1 cut(s) 60
Bsp143I GATC 2 cut(s) 219, 275
BspACI CCGC 1 cut(s) 160
BspCNI CTCAG 2 cut(s) 10, 134
BspPI GGATC 2 cut(s) 227, 283
BspTI CTTAAG 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 11
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 2 cut(s) 219, 275
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 3 cut(s) 109, 175, 355
BstAFI CTTAAG 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 18, 121
BstEII GGTNACC 1 cut(s) 232
BstF5I GGATG 2 cut(s) 70, 306
BstKTI GATC 2 cut(s) 222, 278
BstMAI GTCTC 2 cut(s) 86, 336
BstMBI GATC 2 cut(s) 219, 275
BstNI CCWGG 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 291
BstSFI CTRYAG 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 176
BtsCI GGATG 2 cut(s) 70, 306
CviJI RGCY 7 cut(s) 10, 22, 138, 202, 283, 296, 326
CviKI_1 RGCY 7 cut(s) 10, 22, 138, 202, 283, 296, 326
DdeI CTNAG 2 cut(s) 18, 121
DpnI GATC 2 cut(s) 221, 277
DpnII GATC 2 cut(s) 219, 275
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 232
EcoO65I GGTNACC 1 cut(s) 232
EcoRI GAATTC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 336
FaiI YATR 6 cut(s) 36, 78, 116, 141, 244, 330
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FblI GTMKAC 2 cut(s) 111, 357
FokI GGATG 2 cut(s) 77, 313
FspBI CTAG 2 cut(s) 203, 339
GsaI CCCAGC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 2 cut(s) 51, 146
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 2 cut(s) 112, 358
Hpy188III TCNNGA 5 cut(s) 62, 89, 169, 223, 339
Hpy8I GTNNAC 2 cut(s) 112, 358
HpyCH4III ACNGT 3 cut(s) 109, 175, 355
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 2 cut(s) 18, 121
Kzo9I GATC 2 cut(s) 219, 275
LweI GCATC 1 cut(s) 55
MaeI CTAG 2 cut(s) 203, 339
MaeIII GTNAC 3 cut(s) 175, 232, 253
MalI GATC 2 cut(s) 221, 277
MboI GATC 2 cut(s) 219, 275
MboII GAAGA 2 cut(s) 202, 218
MluCI AATT 2 cut(s) 80, 286
MnlI CCTC 6 cut(s) 50, 69, 130, 268, 316, 325
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 3 cut(s) 27, 285, 367
MslI CAYNNNNRTG 1 cut(s) 173
MspCI CTTAAG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 293
MvaI CCWGG 1 cut(s) 293
NdeII GATC 2 cut(s) 219, 275
NmuCI GTSAC 3 cut(s) 175, 232, 253
OliI CACNNNNGTG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 2 cut(s) 51, 146
Psp6I CCWGG 1 cut(s) 291
PspEI GGTNACC 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 27, 285, 367
Sau3AI GATC 2 cut(s) 219, 275
ScrFI CCNGG 1 cut(s) 293
SetI ASST 8 cut(s) 24, 42, 204, 234, 239, 260, 285, 336
SfaNI GCATC 1 cut(s) 55
SfcI CTRYAG 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 80, 286
SsiI CCGC 1 cut(s) 160
SspMI CTAG 2 cut(s) 203, 339
StyD4I CCNGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 109, 175, 355
TaqI TCGA 1 cut(s) 278
TasI AATT 2 cut(s) 80, 286
TfiI GAWTC 2 cut(s) 51, 146
Tru1I TTAA 3 cut(s) 27, 285, 367
Tru9I TTAA 3 cut(s) 27, 285, 367
TseFI GTSAC 3 cut(s) 175, 232, 253
Tsp45I GTSAC 3 cut(s) 175, 232, 253
TspDTI ATGAA 2 cut(s) 93, 317
TspGWI ACGGA 1 cut(s) 360
Vha464I CTTAAG 1 cut(s) 26
XapI RAATTY 1 cut(s) 80
XbaI TCTAGA 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 111, 357
XmnI GAANNNNTTC 1 cut(s) 210
XspI CTAG 2 cut(s) 203, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.