Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009228

Physical Location & Seq

Genomic Coordinates Forward (+)

4152840 .. 4154028

Gene Structure 1189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGTCAGCCACCGAAGTTTACTCTTGATCTCAAAGTGAACTGTTCATGTAATGGCTGTCAACGTAAACTCAGAAAAACAATACCAAAATTTCAGAAACATATTGCAGACAACTACGGTCTCCAAGTTTCGAAATTTTGTCTGGAGAGCGGAATAGTGGAGATTACAGGGGAAGTAGACGCAAGCAAGCTCGAGGAGCTGAAGGAGCTTCTTCAAAAGTTCGCAAAGAAGGATTCTTCAAACACCACTAGTGAAGGATTCTGCGGTTGTTTTTGGAGGTCAAAAAAGAAAAAAAGCACAAATAGTGAAGCACAATTCAATGACCATTTGAAGAACACGTCGATTAAGAACAATGAGAACAATGACAACAACAAATGTGAAAAGGATGGTGACAAGGACCAGCCCAAGCCTAGTCATCACCAGCAGCAGCAGCAACAACAAAATCCAGATGCAAATAGCAAGAGCAAAGGCAAAATGGGAGAAGATGGCAAAGGCAGCAGCCAACAAGGCAAAGCAATAAAATTAGGAGGACCAAGTGAAAATATGAACAGAAGGGGCGAGTCTAGACAAATGGGTCAGCATCCAAGAGGTCTGACAATGAGTGAGTCAAACCAGATGGGTCAGGTCGGTCAATATGCAAGGGATGAGATTGTGGCCGCGTATGACCAGAACGACCAGACGGGTCAGTATCCAAGGGGTCAGACAAAGGCTCATTATGGCCGGATGGATCATACCAACATGCATCCAATGAGTCAAATGGGTCAAATGAACGGTGGATATTATCAACAACCAGCACACGTTCCACAGATTTCCCCTTTTAGTGATGAACCGACGGCCGACGGTTGCACCATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

285

Amino Acids

31.87

Weight (kDa)

8.78

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009228)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08890 AT3G08890 AT5G37070
fragaria_vesca	FvH4_6g10750 FvH4_6g10750
malus_domestica	MD04G1164700.v1.1 MD12G1178700.v1.1
prunus_persica	Prupe.6G283900_v2.0.a1
pyrus_communis	pycom04g14700 pycom12g16870
rosa_chinensis	RchiOBHm_Chr3g0461791
rosa_laevigata	RLG00000024898
rosa_multiflora	Rmu_sc0004308.1_g000011 Rmu_sc0007777.1_g000001
rosa_roxburghii	Rroxscaffold_6G00417920
rosa_rugosa	Rorug03G0053600 Rorug03G0053700
rosa_samantha	Rh3AG111700 Rh3BG115000 Rh3CG117200 Rh3DG116700
rosa_wichuraiana	Rw3G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	573
AccBSI	CCGCTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	177
AccII	CGCG	1 cut(s)	659
AciI	CCGC	3 cut(s)	150, 264, 657
AclWI	GGATC	1 cut(s)	735
AcoI	YGGCCR	3 cut(s)	654, 718, 834
AcsI	RAATTY	2 cut(s)	89, 134
AcuI	CTGAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	336, 796
AgsI	TTSAA	4 cut(s)	215, 240, 319, 331
AhlI	ACTAGT	1 cut(s)	248
AjiI	CACGTC	1 cut(s)	339
AluBI	AGCT	3 cut(s)	190, 199, 208
AluI	AGCT	3 cut(s)	190, 199, 208
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	735
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	3 cut(s)	654, 718, 834
ApeKI	GCWGC	5 cut(s)	424, 427, 430, 495, 498
ApoI	RAATTY	2 cut(s)	89, 134
AspS9I	GGNCC	2 cut(s)	397, 530
AsuHPI	GGTGA	2 cut(s)	401, 410
AsuII	TTCGAA	1 cut(s)	131
AvaI	CYCGRG	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	397, 530
BbvI	GCAGC	5 cut(s)	436, 439, 442, 507, 510
BccI	CCATC	5 cut(s)	380, 479, 610, 718, 857
BceAI	ACGGC	1 cut(s)	849
BciVI	GTATCC	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	125
BcuI	ACTAGT	1 cut(s)	248
BfaI	CTAG	3 cut(s)	249, 411, 564
BfuI	GTATCC	1 cut(s)	699
BglI	GCCNNNNNGGC	1 cut(s)	507
BisI	GCNGC	6 cut(s)	425, 428, 431, 496, 499, 657
BlsI	GCNGC	6 cut(s)	426, 429, 432, 497, 500, 658
Bme18I	GGWCC	2 cut(s)	397, 530
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	397, 530
BmsI	GCATC	3 cut(s)	439, 589, 751
BpmI	CTGGAG	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	131
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	692
BseDI	CCNNGG	1 cut(s)	692
BseGI	GGATG	5 cut(s)	391, 580, 649, 729, 742
BseMII	CTCAG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	834
BseXI	GCAGC	5 cut(s)	436, 439, 442, 507, 510
Bsh1236I	CGCG	1 cut(s)	659
Bsh1285I	CGRYCG	1 cut(s)	837
BshFI	GGCC	3 cut(s)	656, 720, 836
BsiEI	CGRYCG	1 cut(s)	837
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	721
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	656, 720, 836
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	28, 727
BspACI	CCGC	3 cut(s)	150, 264, 657
BspANI	GGCC	3 cut(s)	656, 720, 836
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	659
BspPI	GGATC	1 cut(s)	735
BspT104I	TTCGAA	1 cut(s)	131
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	692
BssMI	GATC	2 cut(s)	28, 727
BssT1I	CCWWGG	1 cut(s)	692
Bst4CI	ACNGT	4 cut(s)	44, 119, 773, 842
BstBI	TTCGAA	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	184, 188
BstDEI	CTNAG	1 cut(s)	71
BstF5I	GGATG	5 cut(s)	391, 580, 649, 729, 742
BstFNI	CGCG	1 cut(s)	659
BstKTI	GATC	2 cut(s)	31, 730
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	2 cut(s)	28, 727
BstMCI	CGRYCG	1 cut(s)	837
BstMWI	GCNNNNNNNGC	5 cut(s)	196, 205, 430, 495, 507
BstNSI	RCATGY	1 cut(s)	742
BstUI	CGCG	1 cut(s)	659
BstV1I	GCAGC	5 cut(s)	436, 439, 442, 507, 510
BstZI	CGGCCG	1 cut(s)	834
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	656, 720, 836
BtrI	CACGTC	1 cut(s)	339
BtsCI	GGATG	5 cut(s)	391, 580, 649, 729, 742
Cac8I	GCNNGC	2 cut(s)	184, 188
Cfr13I	GGNCC	2 cut(s)	397, 530
CseI	GACGC	1 cut(s)	188
CviAII	CATG	3 cut(s)	48, 739, 853
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	2 cut(s)	30, 729
DpnII	GATC	2 cut(s)	28, 727
DrdI	GACNNNNNNGTC	1 cut(s)	573
DseDI	GACNNNNNNGTC	1 cut(s)	573
EaeI	YGGCCR	3 cut(s)	654, 718, 834
EagI	CGGCCG	1 cut(s)	834
EclXI	CGGCCG	1 cut(s)	834
Eco130I	CCWWGG	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	397, 530
Eco52I	CGGCCG	1 cut(s)	834
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	692
EcoT22I	ATGCAT	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	692
FaeI	CATG	3 cut(s)	51, 742, 856
FaiI	YATR	9 cut(s)	49, 102, 545, 636, 663, 717, 732, 740, 854
FatI	CATG	3 cut(s)	47, 738, 852
FblI	GTMKAC	1 cut(s)	177
Fnu4HI	GCNGC	6 cut(s)	425, 428, 431, 496, 499, 657
FokI	GGATG	5 cut(s)	398, 567, 656, 729, 736
Fsp4HI	GCNGC	6 cut(s)	425, 428, 431, 496, 499, 657
FspBI	CTAG	3 cut(s)	249, 411, 564
GluI	GCNGC	6 cut(s)	425, 428, 431, 496, 499, 657
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	656, 720, 836
HapII	CCGG	1 cut(s)	721
HgaI	GACGC	1 cut(s)	188
Hin1II	CATG	3 cut(s)	51, 742, 856
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	6 cut(s)	4, 233, 258, 560, 605, 751
HpaII	CCGG	1 cut(s)	721
HphI	GGTGA	2 cut(s)	401, 410
Hpy166II	GTNNAC	5 cut(s)	21, 40, 62, 68, 178
Hpy188I	TCNGA	4 cut(s)	74, 96, 594, 702
Hpy188III	TCNNGA	4 cut(s)	26, 143, 446, 564
Hpy8I	GTNNAC	5 cut(s)	21, 40, 62, 68, 178
Hpy99I	CGWCG	3 cut(s)	343, 835, 842
HpyAV	CCTTC	4 cut(s)	196, 223, 248, 546
HpyCH4III	ACNGT	4 cut(s)	44, 119, 773, 842
HpyCH4IV	ACGT	3 cut(s)	64, 338, 798
HpyCH4V	TGCA	5 cut(s)	107, 452, 638, 742, 846
HpyF10VI	GCNNNNNNNGC	5 cut(s)	196, 205, 430, 495, 507
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	3 cut(s)	64, 338, 798
Hsp92II	CATG	3 cut(s)	51, 742, 856
Kzo9I	GATC	2 cut(s)	28, 727
LmnI	GCTCC	2 cut(s)	196, 205
Lsp1109I	GCAGC	5 cut(s)	436, 439, 442, 507, 510
LweI	GCATC	3 cut(s)	439, 589, 751
MaeI	CTAG	3 cut(s)	249, 411, 564
MaeII	ACGT	3 cut(s)	64, 338, 798
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	30, 729
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	28, 727
MboII	GAAGA	4 cut(s)	203, 228, 343, 494
MluCI	AATT	4 cut(s)	89, 134, 314, 521
MlyI	GAGTC	4 cut(s)	13, 569, 614, 760
MnlI	CCTC	4 cut(s)	187, 270, 521, 581
Mph1103I	ATGCAT	1 cut(s)	744
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	1 cut(s)	851
MspI	CCGG	1 cut(s)	721
MvnI	CGCG	1 cut(s)	659
MwoI	GCNNNNNNNGC	5 cut(s)	196, 205, 430, 495, 507
NdeII	GATC	2 cut(s)	28, 727
NlaIII	CATG	3 cut(s)	51, 742, 856
NmuCI	GTSAC	1 cut(s)	389
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	1 cut(s)	742
NspV	TTCGAA	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	233, 258
PkrI	GCNGC	6 cut(s)	426, 429, 432, 497, 500, 658
PleI	GAGTC	4 cut(s)	12, 568, 613, 759
PpsI	GAGTC	4 cut(s)	12, 568, 613, 759
PspPI	GGNCC	2 cut(s)	397, 530
PspXI	VCTCGAGB	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	6 cut(s)	425, 428, 431, 496, 499, 657
Sau3AI	GATC	2 cut(s)	28, 727
Sau96I	GGNCC	2 cut(s)	397, 530
SchI	GAGTC	4 cut(s)	13, 569, 614, 760
SetI	ASST	9 cut(s)	67, 192, 201, 210, 281, 341, 592, 627, 801
SfaNI	GCATC	3 cut(s)	439, 589, 751
Sfr274I	CTCGAG	1 cut(s)	191
SfuI	TTCGAA	1 cut(s)	131
SinI	GGWCC	2 cut(s)	397, 530
SlaI	CTCGAG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SpeI	ACTAGT	1 cut(s)	248
Sse9I	AATT	4 cut(s)	89, 134, 314, 521
SsiI	CCGC	3 cut(s)	150, 264, 657
SspMI	CTAG	3 cut(s)	249, 411, 564
StyI	CCWWGG	1 cut(s)	692
TaaI	ACNGT	4 cut(s)	44, 119, 773, 842
TaiI	ACGT	3 cut(s)	67, 341, 801
TaqI	TCGA	3 cut(s)	131, 192, 341
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	4 cut(s)	89, 134, 314, 521
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	233, 258
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	389
TseI	GCWGC	5 cut(s)	424, 427, 430, 495, 498
Tsp45I	GTSAC	1 cut(s)	389
TspDTI	ATGAA	4 cut(s)	36, 560, 782, 840
VpaK11BI	GGWCC	2 cut(s)	397, 530
XapI	RAATTY	2 cut(s)	89, 134
XbaI	TCTAGA	1 cut(s)	563
XceI	RCATGY	1 cut(s)	742
XhoI	CTCGAG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	177
XspI	CTAG	3 cut(s)	249, 411, 564
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.