AT5G37070

BEST Arabidopsis thaliana protein match is Protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009228
Physical Location & Seq
Forward (+)
14650913 .. 14652363
1451 bp
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UTR
Exon/CDS
Intron
AT5G37070.1

Sequence Viewer

Length: 513 bp
ATGGATCAGATACTGAACAAAGTTGGCTCTTACTGGTTAGGGCAAAAGGCAAACAAAGAGTTCAATTCCGTCGGTGACGATTTCAATTCATTGTCTAGCAGTATTGAAGGAGGTACCAAGTGGTTAGTCAACAAACTCAAAGGAAAAATGCAGAAGCCATTACCTGAATTGTTGAAGGAATTTGGTCTACCAGTTGGGATCTTCCCACAGGATGCTACAAACTATGAATTCAACGAAGAGACGGGTAAATTGACTGTATTCATCCCTGAGACATGTGAAGTTGGGTACAGAGATTCATCGGTTCTGCGGTTTTCAACTACGGTAACGGGTTACTTGGAGAAAGGGAAGCTAGCAGAAGTGGAAGGCATGAAGACAAAGGTTATGATATGGGTGAAAGTGACTTGTATCTCAGCTGATTCATCAAAGGTATATTTCACAGCCGGGATTAAGAAAAGCAGAAGCAGAGATGCTTATGAGGTAATACGACCTGGTGTTGGTGTTGATAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

170

Amino Acids

18.95

Weight (kDa)

8.74

Isoelectric Point (pI)

24.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 55 - 159 1.6e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 187
AciI CCGC 1 cut(s) 307
AclWI GGATC 2 cut(s) 12, 206
AcsI RAATTY 3 cut(s) 179, 227, 506
AfaI GTAC 2 cut(s) 115, 287
AfiI CCNNNNNNNGG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 272
AgsI TTSAA 6 cut(s) 64, 85, 107, 175, 232, 315
AjnI CCWGG 1 cut(s) 487
AluBI AGCT 2 cut(s) 349, 413
AluI AGCT 2 cut(s) 349, 413
Alw26I GTCTC 2 cut(s) 233, 263
AlwI GGATC 2 cut(s) 12, 206
AlwNI CAGNNNCTG 1 cut(s) 13
ApoI RAATTY 3 cut(s) 179, 227, 506
Asp718I GGTACC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 86, 403
AsuNHI GCTAGC 1 cut(s) 349
BanI GGYRCC 1 cut(s) 113
BbsI GAAGAC 1 cut(s) 377
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 2 cut(s) 233, 263
BfaI CTAG 2 cut(s) 96, 350
Bme1390I CCNGG 2 cut(s) 442, 489
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 442, 489
BmsI GCATC 2 cut(s) 202, 457
BmtI GCTAGC 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 38, 191
BseBI CCWGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 217, 261
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 258, 423
BseNI ACTGG 2 cut(s) 38, 191
BshNI GGYRCC 1 cut(s) 113
BsiSI CCGG 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 2 cut(s) 233, 263
BsmBI CGTCTC 1 cut(s) 233
Bsp143I GATC 2 cut(s) 4, 198
BspACI CCGC 1 cut(s) 307
BspCNI CTCAG 2 cut(s) 259, 422
BspLI GGNNCC 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 12, 206
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 38, 191
BssMI GATC 2 cut(s) 4, 198
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 256, 322
Bst6I CTCTTC 1 cut(s) 231
BstC8I GCNNGC 1 cut(s) 351
BstDEI CTNAG 2 cut(s) 267, 409
BstF5I GGATG 2 cut(s) 217, 261
BstKTI GATC 2 cut(s) 7, 201
BstMAI GTCTC 2 cut(s) 233, 263
BstMBI GATC 2 cut(s) 4, 198
BstNI CCWGG 1 cut(s) 489
BstNSI RCATGY 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 440, 487
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BtsCI GGATG 2 cut(s) 217, 261
Cac8I GCNNGC 1 cut(s) 351
CaiI CAGNNNCTG 1 cut(s) 13
CsiI ACCWGGT 1 cut(s) 487
Csp6I GTAC 2 cut(s) 114, 286
CviAII CATG 2 cut(s) 273, 367
CviJI RGCY 5 cut(s) 27, 157, 349, 413, 440
CviKI_1 RGCY 5 cut(s) 27, 157, 349, 413, 440
CviQI GTAC 2 cut(s) 114, 286
DdeI CTNAG 2 cut(s) 267, 409
DpnI GATC 2 cut(s) 6, 200
DpnII GATC 2 cut(s) 4, 198
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 487
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 2 cut(s) 276, 370
FaiI YATR 7 cut(s) 225, 274, 368, 383, 388, 430, 474
FatI CATG 2 cut(s) 272, 366
FblI GTMKAC 1 cut(s) 187
FokI GGATG 2 cut(s) 224, 248
FspBI CTAG 2 cut(s) 96, 350
HapII CCGG 1 cut(s) 441
Hin1II CATG 2 cut(s) 276, 370
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 293, 416
HpaII CCGG 1 cut(s) 441
HphI GGTGA 2 cut(s) 86, 403
Hpy166II GTNNAC 2 cut(s) 130, 188
Hpy188I TCNGA 1 cut(s) 9
Hpy8I GTNNAC 2 cut(s) 130, 188
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 101, 169, 356
HpyCH4III ACNGT 2 cut(s) 256, 322
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 267, 409
Hsp92II CATG 2 cut(s) 276, 370
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 4, 198
LpnPI CCDG 8 cut(s) 19, 177, 194, 204, 279, 454, 474, 501
LweI GCATC 2 cut(s) 202, 457
MabI ACCWGGT 1 cut(s) 487
MaeI CTAG 2 cut(s) 96, 350
MaeIII GTNAC 4 cut(s) 74, 322, 329, 397
MalI GATC 2 cut(s) 6, 200
MboI GATC 2 cut(s) 4, 198
MboII GAAGA 3 cut(s) 193, 248, 382
MflI RGATCY 1 cut(s) 198
MluCI AATT 7 cut(s) 64, 85, 167, 179, 227, 248, 506
MnlI CCTC 2 cut(s) 104, 469
MseI TTAA 1 cut(s) 447
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 1 cut(s) 441
MspR9I CCNGG 2 cut(s) 442, 489
MvaI CCWGG 1 cut(s) 489
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 4, 198
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 2 cut(s) 276, 370
NlaIV GGNNCC 1 cut(s) 115
NmuCI GTSAC 2 cut(s) 74, 397
NspI RCATGY 1 cut(s) 276
PciI ACATGT 1 cut(s) 272
PfeI GAWTC 2 cut(s) 293, 416
PscI ACATGT 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 487
PspGI CCWGG 1 cut(s) 487
PspN4I GGNNCC 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 198
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 2 cut(s) 115, 287
RsaNI GTAC 2 cut(s) 114, 286
SaqAI TTAA 1 cut(s) 447
Sau3AI GATC 2 cut(s) 4, 198
ScrFI CCNGG 2 cut(s) 442, 489
SetI ASST 8 cut(s) 115, 166, 351, 381, 415, 429, 480, 490
SexAI ACCWGGT 1 cut(s) 487
SfaNI GCATC 2 cut(s) 202, 457
Sse9I AATT 7 cut(s) 64, 85, 167, 179, 227, 248, 506
SsiI CCGC 1 cut(s) 307
SspMI CTAG 2 cut(s) 96, 350
StyD4I CCNGG 2 cut(s) 440, 487
TaaI ACNGT 2 cut(s) 256, 322
TasI AATT 7 cut(s) 64, 85, 167, 179, 227, 248, 506
TfiI GAWTC 2 cut(s) 293, 416
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 2 cut(s) 74, 397
Tsp45I GTSAC 2 cut(s) 74, 397
TspDTI ATGAA 6 cut(s) 78, 240, 250, 285, 383, 408
TspGWI ACGGA 1 cut(s) 58
XapI RAATTY 3 cut(s) 179, 227, 506
XceI RCATGY 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 187
XspI CTAG 2 cut(s) 96, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.