Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007629

Physical Location & Seq

Genomic Coordinates Forward (+)

2742826 .. 2744974

Gene Structure 2149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G08990.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAAGACTATTCGTGATAGACCTCGAAGGACTGGTTTATAGCTGCAAGTATTGTCAGACACATTTCGCAGTTACTAATGATATTATCTCAAAGTCATTTCACTGCAAACACGGAAGGGCTTATCTTTTCGACAATGTTGTCAATGTGACGGTTGGAGAGAAGGAGCATCGCGTCATGATAACTGGTTGGCACACTGTAGCTGACATCTTCTGTGTTAGCTGTGGCTCTCTTGTCGGCTGGAAATACGAAATCGCTTACGATAAGTCTCAGAAATACAAGGAAGGAAAATTCATCTTAGAAAGGTTTAAGGTGCTTGGGCCCTATGGAGGAGGATACGACATGAACCAGAACGAGCCTATGACTGGAAGCGATGATGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001775 GO:0002252 GO:0002263 GO:0002274 GO:0002275 GO:0002283 GO:0002366 GO:0002376 GO:0002443 GO:0002444 GO:0002446 GO:0003674 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006810 GO:0006887 GO:0006915 GO:0006955 GO:0008150 GO:0008219 GO:0008270 GO:0009987 GO:0012501 GO:0012505 GO:0016192 GO:0030141 GO:0031410 GO:0031974 GO:0031982 GO:0032940 GO:0036230 GO:0042119 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043299 GO:0043312 GO:0044422 GO:0044424 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045055 GO:0045321 GO:0046872 GO:0046903 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0070013 GO:0070820 GO:0097708 GO:0099503 GO:0101002 GO:1904724 GO:1904813

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

128

Amino Acids

14.61

Weight (kDa)

5.93

Isoelectric Point (pI)

16.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yippee-Mis18	PF03226	12 - 105	1.1e-13	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08990 AT3G08990 AT3G08990
fragaria_vesca	FvH4_6g11560 FvH4_6g11560 FvH4_6g11560
malus_domestica	MD04G1151100.v1.1 MD12G1165000.v1.1
prunus_persica	Prupe.6G276000_v2.0.a1
pyrus_communis	pycom04g13680 pycom12g15780
rosa_chinensis	RchiOBHm_Chr3g0463261
rosa_laevigata	RLG00000024795
rosa_multiflora	Rmu_sc0002976.1_g000002 Rmu_sc0003073.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416740
rosa_rugosa	Rorug03G0063000 Rorug03G0063100 Rorug03G0063200.1
rosa_samantha	Rh3AG121200 Rh3BG125700 Rh3CG127600 Rh3DG126800
rosa_wichuraiana	Rw3G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	140
AccII	CGCG	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	329, 365
AluBI	AGCT	3 cut(s)	45, 203, 222
AluI	AGCT	3 cut(s)	45, 203, 222
Alw26I	GTCTC	1 cut(s)	273
AoxI	GGCC	1 cut(s)	320
ApaI	GGGCCC	1 cut(s)	324
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	320, 321
BaeGI	GKGCMC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	329
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmgT120I	GGNCC	2 cut(s)	320, 321
BmiI	GGNNCC	1 cut(s)	322
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 365
Bse1I	ACTGG	3 cut(s)	39, 190, 370
BseLI	CCNNNNNNNGG	2 cut(s)	329, 365
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	3 cut(s)	39, 190, 370
BseRI	GAGGAG	1 cut(s)	345
BseSI	GKGCMC	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	322
BslI	CCNNNNNNNGG	2 cut(s)	329, 365
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	322
Bsp120I	GGGCCC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	324
BspANI	GGCC	1 cut(s)	322
BspCNI	CTCAG	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	39, 190, 370
Bst4CI	ACNGT	2 cut(s)	154, 199
BstDEI	CTNAG	2 cut(s)	270, 298
BstFNI	CGCG	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	273
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	324
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	13
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	322
BtgZI	GCGATG	1 cut(s)	155
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	2 cut(s)	103, 195
CciI	TCATGA	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	320, 321
CseI	GACGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	178, 343
CviJI	RGCY	8 cut(s)	45, 122, 203, 222, 228, 240, 322, 358
CviKI_1	RGCY	8 cut(s)	45, 122, 203, 222, 228, 240, 322, 358
DdeI	CTNAG	2 cut(s)	270, 298
DrdI	GACNNNNNNGTC	1 cut(s)	140
DseDI	GACNNNNNNGTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	321
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	2 cut(s)	181, 346
FaiI	YATR	5 cut(s)	42, 179, 327, 344, 362
FatI	CATG	2 cut(s)	177, 342
Fnu4HI	GCNGC	1 cut(s)	46
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	46
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	322
HgaI	GACGC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	181, 346
Hpy188I	TCNGA	2 cut(s)	60, 273
Hpy188III	TCNNGA	2 cut(s)	16, 178
HpyAV	CCTTC	4 cut(s)	23, 111, 157, 278
HpyCH4III	ACNGT	2 cut(s)	154, 199
HpyCH4V	TGCA	2 cut(s)	48, 108
HpyF3I	CTNAG	2 cut(s)	270, 298
Hsp92II	CATG	2 cut(s)	181, 346
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	20, 171, 226, 351, 362
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	73, 148
MboII	GAAGA	2 cut(s)	18, 202
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	3 cut(s)	35, 323, 326
MseI	TTAA	1 cut(s)	309
MvnI	CGCG	1 cut(s)	174
NlaIII	CATG	2 cut(s)	181, 346
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	177
PkrI	GCNGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	322
PspOMI	GGGCCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	320, 321
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	320, 321
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	6 cut(s)	27, 47, 205, 224, 308, 315
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	1 cut(s)	198
Sse9I	AATT	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	154, 199
TaqI	TCGA	2 cut(s)	27, 132
TasI	AATT	1 cut(s)	290
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	2 cut(s)	110, 202
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	2 cut(s)	283, 359
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	110, 202
XapI	RAATTY	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.