Rorug03G0063100

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0007629
Physical Location & Seq
Forward (+)
4690934 .. 4691551
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0063100.1

Sequence Viewer

Length: 618 bp
ATGGATTGCAGGACCTTGGAAATAAGGCTGTTATCGGCTGAACAGATCAAGAACGTCAACAACTTCTCCACGATGGACGTCTACGCCGTCGTTTCAGTCTCCGGCGGAGCCGACAAGCACAAGTTCATCACACCCATCCACAAAAACTGCGGCACCCACCCCAGATGGAACAACCCCCCCTTCACTTTCACGCTCGACGACGCCGCTCTTAACCAGAACCGCCTCACACTTAAGATCAAGCTCATCTCCGACCGAATCCTCAAGGAAACCAAGATCGGAAAGGCCGTCATTCCGGTGAGTCAGCTGCTAGAAAATAGTGGCAAGGACAACCTCCCGTACGTGACCTACACGGTTTTAAGGCCCAAGGAGAAACCCCAAGGCAACGTCACTTTTGTTTACAAGTTCGGCGAGAAATTTTGGGCTCCTCTTCCCGTTCAGCCCAAGGCCCAAAAGGAGGTTCTCGAGCAGCCAAGGAGTTTGATGTCCATGCCACAGCCGCAGGCCGAGTATGAGTACTCGTCACTTTTGCATTTGAGTTATGGGTATCCGTTACAGTCGCAAGCCGAGTACGAGTACTCGTCGATTGTGCAACAAGGTTACGGGTACCCGATACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

205

Amino Acids

23.36

Weight (kDa)

8.91

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C2 PF00168 5 - 108 4.3e-14 C2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
Acc65I GGTACC 1 cut(s) 603
AccB1I GGYRCC 2 cut(s) 152, 603
AccBSI CCGCTC 1 cut(s) 206
AccI GTMKAC 1 cut(s) 81
AciI CCGC 5 cut(s) 105, 150, 204, 220, 497
AcsI RAATTY 1 cut(s) 413
AcyI GRCGYC 2 cut(s) 78, 201
AfaI GTAC 5 cut(s) 338, 515, 569, 575, 605
AfiI CCNNNNNNNGG 1 cut(s) 454
AflII CTTAAG 1 cut(s) 230
AjuI GAANNNNNNNTTGG 2 cut(s) 441, 473
AluBI AGCT 2 cut(s) 241, 304
AluI AGCT 2 cut(s) 241, 304
Alw26I GTCTC 1 cut(s) 103
Ama87I CYCGRG 1 cut(s) 461
AoxI GGCC 4 cut(s) 282, 359, 444, 501
ApeKI GCWGC 2 cut(s) 304, 466
ApoI RAATTY 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 603
AspS9I GGNCC 3 cut(s) 12, 360, 445
AsuHPI GGTGA 1 cut(s) 307
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 1 cut(s) 12
BanI GGYRCC 2 cut(s) 152, 603
BanII GRGCYC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 291, 478
BccI CCATC 3 cut(s) 67, 143, 159
BceAI ACGGC 2 cut(s) 71, 269
BciVI GTATCC 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 103
BfaI CTAG 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 230
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 5 cut(s) 151, 204, 305, 467, 497
BlsI GCNGC 5 cut(s) 152, 205, 306, 468, 498
BmcAI AGTACT 2 cut(s) 515, 575
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 461
BmgT120I GGNCC 3 cut(s) 12, 360, 445
BmiI GGNNCC 4 cut(s) 109, 154, 423, 605
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 2 cut(s) 78, 201
BsaJI CCNNGG 5 cut(s) 15, 363, 376, 441, 470
BsaWI WCCGGW 1 cut(s) 292
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 454
BseDI CCNNGG 5 cut(s) 15, 363, 376, 441, 470
BseGI GGATG 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 454
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 2 cut(s) 291, 478
Bsh1285I CGRYCG 1 cut(s) 253
BshFI GGCC 4 cut(s) 284, 361, 446, 503
BshNI GGYRCC 2 cut(s) 152, 603
BsiEI CGRYCG 1 cut(s) 253
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 2 cut(s) 102, 293
BsiWI CGTACG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 4 cut(s) 284, 361, 446, 503
BsoBI CYCGRG 1 cut(s) 461
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 3 cut(s) 45, 234, 273
BspACI CCGC 5 cut(s) 105, 150, 204, 220, 497
BspANI GGCC 4 cut(s) 284, 361, 446, 503
BspLI GGNNCC 4 cut(s) 109, 154, 423, 605
BspT107I GGYRCC 2 cut(s) 152, 603
BspTI CTTAAG 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 206
BssECI CCNNGG 5 cut(s) 15, 363, 376, 441, 470
BssMI GATC 3 cut(s) 45, 234, 273
BssNI GRCGYC 2 cut(s) 78, 201
BssT1I CCWWGG 5 cut(s) 15, 363, 376, 441, 470
Bst4CI ACNGT 2 cut(s) 352, 555
Bst6I CTCTTC 1 cut(s) 432
BstACI GRCGYC 2 cut(s) 78, 201
BstAFI CTTAAG 1 cut(s) 230
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 501, 561
BstF5I GGATG 1 cut(s) 135
BstKTI GATC 3 cut(s) 48, 237, 276
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 3 cut(s) 45, 234, 273
BstMCI CGRYCG 1 cut(s) 253
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 291, 478
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 4 cut(s) 284, 361, 446, 503
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 2 cut(s) 501, 561
Cfr13I GGNCC 3 cut(s) 12, 360, 445
CseI GACGC 1 cut(s) 209
Csp6I GTAC 5 cut(s) 337, 514, 568, 574, 604
CviAII CATG 1 cut(s) 487
CviQI GTAC 5 cut(s) 337, 514, 568, 574, 604
DpnI GATC 3 cut(s) 47, 236, 275
DpnII GATC 3 cut(s) 45, 234, 273
Eam1104I CTCTTC 1 cut(s) 432
EarI CTCTTC 1 cut(s) 432
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 5 cut(s) 15, 363, 376, 441, 470
Eco24I GRGCYC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 12
Eco88I CYCGRG 1 cut(s) 461
EcoO109I RGGNCCY 1 cut(s) 12
EcoT14I CCWWGG 5 cut(s) 15, 363, 376, 441, 470
EcoT38I GRGCYC 1 cut(s) 424
ErhI CCWWGG 5 cut(s) 15, 363, 376, 441, 470
FaeI CATG 1 cut(s) 490
FaiI YATR 3 cut(s) 488, 510, 540
FatI CATG 1 cut(s) 486
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 5 cut(s) 151, 204, 305, 467, 497
FokI GGATG 1 cut(s) 122
FriOI GRGCYC 1 cut(s) 424
Fsp4HI GCNGC 5 cut(s) 151, 204, 305, 467, 497
FspBI CTAG 1 cut(s) 308
GluI GCNGC 5 cut(s) 151, 204, 305, 467, 497
HaeIII GGCC 4 cut(s) 284, 361, 446, 503
HapII CCGG 2 cut(s) 102, 293
HgaI GACGC 1 cut(s) 209
Hin1I GRCGYC 2 cut(s) 78, 201
Hin1II CATG 1 cut(s) 490
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 2 cut(s) 255, 298
HpaII CCGG 2 cut(s) 102, 293
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 3 cut(s) 58, 82, 397
Hpy188I TCNGA 2 cut(s) 250, 278
Hpy188III TCNNGA 2 cut(s) 49, 461
Hpy8I GTNNAC 3 cut(s) 58, 82, 397
Hpy99I CGWCG 4 cut(s) 92, 200, 203, 583
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 2 cut(s) 352, 555
HpyCH4IV ACGT 4 cut(s) 54, 78, 339, 384
HpyCH4V TGCA 3 cut(s) 9, 529, 589
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpySE526I ACGT 4 cut(s) 54, 78, 339, 384
Hsp92I GRCGYC 2 cut(s) 78, 201
Hsp92II CATG 1 cut(s) 490
KpnI GGTACC 1 cut(s) 607
Kzo9I GATC 3 cut(s) 45, 234, 273
LmnI GCTCC 2 cut(s) 107, 427
LpnPI CCDG 5 cut(s) 115, 175, 227, 306, 485
Lsp1109I GCAGC 2 cut(s) 291, 478
MaeI CTAG 1 cut(s) 308
MaeII ACGT 4 cut(s) 54, 78, 339, 384
MaeIII GTNAC 5 cut(s) 340, 385, 519, 549, 596
MalI GATC 3 cut(s) 47, 236, 275
MbiI CCGCTC 1 cut(s) 206
MboI GATC 3 cut(s) 45, 234, 273
MboII GAAGA 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 413
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 5 cut(s) 233, 269, 341, 435, 448
MseI TTAA 3 cut(s) 210, 231, 356
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 304
MspCI CTTAAG 1 cut(s) 230
MspI CCGG 2 cut(s) 102, 293
MwoI GCNNNNNNNGC 1 cut(s) 496
NdeII GATC 3 cut(s) 45, 234, 273
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 4 cut(s) 109, 154, 423, 605
NmeAIII GCCGAG 2 cut(s) 529, 589
NmuCI GTSAC 3 cut(s) 340, 385, 519
PaeR7I CTCGAG 1 cut(s) 461
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 282
PfeI GAWTC 1 cut(s) 255
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 5 cut(s) 152, 205, 306, 468, 498
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Ppu21I YACGTR 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 12
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 4 cut(s) 109, 154, 423, 605
PspPI GGNCC 3 cut(s) 12, 360, 445
PspPPI RGGWCCY 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 304
RsaI GTAC 5 cut(s) 338, 515, 569, 575, 605
RsaNI GTAC 5 cut(s) 337, 514, 568, 574, 604
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 3 cut(s) 210, 231, 356
SatI GCNGC 5 cut(s) 151, 204, 305, 467, 497
Sau3AI GATC 3 cut(s) 45, 234, 273
Sau96I GGNCC 3 cut(s) 12, 360, 445
ScaI AGTACT 2 cut(s) 515, 575
SchI GAGTC 1 cut(s) 307
SduI GDGCHC 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 461
SinI GGWCC 1 cut(s) 12
SlaI CTCGAG 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 3 cut(s) 230, 260, 461
SmoI CTYRAG 3 cut(s) 230, 260, 461
Sse9I AATT 1 cut(s) 413
SsiI CCGC 5 cut(s) 105, 150, 204, 220, 497
SspMI CTAG 1 cut(s) 308
StyI CCWWGG 5 cut(s) 15, 363, 376, 441, 470
TaaI ACNGT 2 cut(s) 352, 555
TaiI ACGT 4 cut(s) 57, 81, 342, 387
TaqI TCGA 3 cut(s) 195, 462, 581
TaqII GACCGA 1 cut(s) 267
TasI AATT 1 cut(s) 413
TatI WGTACW 2 cut(s) 513, 573
TauI GCSGC 3 cut(s) 153, 206, 499
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 3 cut(s) 210, 231, 356
Tru9I TTAA 3 cut(s) 210, 231, 356
TseFI GTSAC 3 cut(s) 340, 385, 519
TseI GCWGC 2 cut(s) 304, 466
Tsp45I GTSAC 3 cut(s) 340, 385, 519
TspDTI ATGAA 1 cut(s) 115
TspGWI ACGGA 1 cut(s) 537
Vha464I CTTAAG 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 413
XhoI CTCGAG 1 cut(s) 461
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 308
ZraI GACGTC 1 cut(s) 79
ZrmI AGTACT 2 cut(s) 515, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.