FvH4_6g11560

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0007629
Physical Location & Seq
Forward (+)
6934319 .. 6936511
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11560.t1

Sequence Viewer

Length: 411 bp
ATGGGAAGGCTGTTTGTGCTGACTCTTGAAGGACACGTCTATAGCTGCAAGTACTGCAAAACCCATCTTGCTCTTGCTGATGACATTCTCTCCACGTCTTTTCACTGCAGGCATGGAAAGGCTTATCTTTTCGATAATGTTGTAAATGTCACAGATGGAGAGAAAGAAGAGCGGATCATGATAACAGGACTGCATACTGTTGTGGACATCTTCTGTGTCTCATGTGGCTCAGTTGTGGGGTGGAAATATGAGTCTGCCTATGATGAAGGCCAGAAGTATAAGGAGGGAAAATTTATCCTTGAGAGATTCAAGATTCTCGGCCCTGATGGAAGCAACTACCCGAGAGCTCATGAAGACTACTCGATAGCTCAGGAAGCCGAGATTGGTGGAAGTGATGTTGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

5.04

Isoelectric Point (pI)

20.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 105 2.3e-13 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 2 cut(s) 29, 310
AjiI CACGTC 2 cut(s) 37, 96
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 45, 347, 368
AluI AGCT 3 cut(s) 45, 347, 368
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 223
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 340
AoxI GGCC 2 cut(s) 268, 319
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 340
BanII GRGCYC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 360
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 32
BccI CCATC 3 cut(s) 72, 149, 320
BcoDI GTCTC 1 cut(s) 223
BfmI CTRYAG 2 cut(s) 40, 106
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 340
BmgBI CACGTC 2 cut(s) 37, 96
BmgT120I GGNCC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
BseMII CTCAG 2 cut(s) 243, 383
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 2 cut(s) 270, 321
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 340
BsmAI GTCTC 1 cut(s) 223
BsnI GGCC 2 cut(s) 270, 321
BsoBI CYCGRG 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 172
BspANI GGCC 2 cut(s) 270, 321
BspCNI CTCAG 2 cut(s) 242, 382
BspHI TCATGA 2 cut(s) 177, 349
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 172
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 110
BstDEI CTNAG 2 cut(s) 229, 369
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 16, 54, 374
BstSFI CTRYAG 2 cut(s) 40, 106
BstV1I GCAGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 360
BsuRI GGCC 2 cut(s) 270, 321
BtrI CACGTC 2 cut(s) 37, 96
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 2 cut(s) 177, 349
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 52
CviAII CATG 4 cut(s) 113, 178, 222, 350
CviJI RGCY 9 cut(s) 10, 45, 122, 228, 270, 321, 347, 368, 377
CviKI_1 RGCY 9 cut(s) 10, 45, 122, 228, 270, 321, 347, 368, 377
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 229, 369
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 349
FaeI CATG 4 cut(s) 116, 181, 225, 353
FaiI YATR 9 cut(s) 42, 114, 179, 195, 223, 249, 261, 279, 351
FatI CATG 4 cut(s) 112, 177, 221, 349
Fnu4HI GCNGC 1 cut(s) 46
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
HaeIII GGCC 2 cut(s) 270, 321
Hin1II CATG 4 cut(s) 116, 181, 225, 353
HinfI GANTC 4 cut(s) 22, 251, 306, 313
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 5 cut(s) 26, 178, 310, 350, 371
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 23, 260
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 2 cut(s) 36, 95
HpyCH4V TGCA 4 cut(s) 48, 57, 108, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 54, 374
HpyF3I CTNAG 2 cut(s) 229, 369
HpySE526I ACGT 2 cut(s) 36, 95
Hsp92II CATG 4 cut(s) 116, 181, 225, 353
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 5 cut(s) 94, 171, 284, 336, 356
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 2 cut(s) 36, 95
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 174
MboII GAAGA 3 cut(s) 179, 202, 365
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 1 cut(s) 290
MlyI GAGTC 2 cut(s) 16, 260
MnlI CCTC 1 cut(s) 277
MwoI GCNNNNNNNGC 3 cut(s) 16, 54, 374
NdeII GATC 1 cut(s) 174
NlaIII CATG 4 cut(s) 116, 181, 225, 353
NmeAIII GCCGAG 2 cut(s) 297, 403
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 2 cut(s) 177, 349
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 306, 313
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 2 cut(s) 16, 259
PpsI GAGTC 2 cut(s) 16, 259
Psp124BI GAGCTC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 320
PstI CTGCAG 1 cut(s) 110
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SacI GAGCTC 1 cut(s) 349
SapI GCTCTTC 1 cut(s) 162
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 320
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 2 cut(s) 16, 260
SduI GDGCHC 1 cut(s) 349
SetI ASST 5 cut(s) 39, 47, 98, 349, 370
SfcI CTRYAG 2 cut(s) 40, 106
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 172
SstI GAGCTC 1 cut(s) 349
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 2 cut(s) 39, 98
TaqI TCGA 2 cut(s) 132, 362
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 2 cut(s) 306, 313
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 279, 366
TspRI CASTG 1 cut(s) 110
XapI RAATTY 1 cut(s) 290
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.