Rw3G010290

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0007629
Physical Location & Seq
Forward (+)
9875403 .. 9878071
2669 bp
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UTR
Exon/CDS
Intron
Rw3G010290.1

Sequence Viewer

Length: 279 bp
ATGGGAAGGCTGTTTCTGCTGACTCTTGAAGGACACGTCTATAGCTGCAAGTACTGCAGAACCCATCTTGCTCTTGCTGATGACATTCTCTCTCGGTCTTTTCACTGCAGGCATGGAAAGGCTTATCTTTTGGATAATGTTGTAAATGTCACAGATGGAGAGAAAGAAGAGCGGATCATGATAACAGGACTGCATACTGTTGTTGACATCTTTTGTGTTTCATGTGGCTCAATTGTCGGGTGGAAATATTTCTTATCACCAGAGGTTATTCTGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

6.49

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 13 - 86 5.6e-08 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 182
AfaI GTAC 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 29
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 1 cut(s) 45
AluI AGCT 1 cut(s) 45
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 1 cut(s) 45
Asp700I GAANNNNTTC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 249
BbvI GCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 72, 149
BfmI CTRYAG 3 cut(s) 40, 55, 106
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmcAI AGTACT 1 cut(s) 53
BmgBI CACGTC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 172
BspHI TCATGA 1 cut(s) 177
BspMAI CTGCAG 2 cut(s) 59, 110
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 172
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 110
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 2 cut(s) 16, 54
BstSFI CTRYAG 3 cut(s) 40, 55, 106
BstV1I GCAGC 1 cut(s) 32
BtrI CACGTC 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 177
Csp6I GTAC 1 cut(s) 52
CviAII CATG 3 cut(s) 113, 178, 222
CviJI RGCY 4 cut(s) 10, 45, 122, 228
CviKI_1 RGCY 4 cut(s) 10, 45, 122, 228
CviQI GTAC 1 cut(s) 52
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
FaeI CATG 3 cut(s) 116, 181, 225
FaiI YATR 5 cut(s) 42, 114, 179, 195, 223
FatI CATG 3 cut(s) 112, 177, 221
Fnu4HI GCNGC 1 cut(s) 46
Fsp4HI GCNGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 116, 181, 225
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 1 cut(s) 22
HphI GGTGA 1 cut(s) 249
Hpy166II GTNNAC 1 cut(s) 205
Hpy188III TCNNGA 2 cut(s) 26, 178
Hpy8I GTNNAC 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 23
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 48, 57, 108, 193
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 54
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 3 cut(s) 116, 181, 225
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 94, 171, 273
Lsp1109I GCAGC 1 cut(s) 32
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 1 cut(s) 148
MalI GATC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 179
MfeI CAATTG 1 cut(s) 231
MluCI AATT 1 cut(s) 231
MlyI GAGTC 1 cut(s) 16
MnlI CCTC 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 248
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 16, 54
NdeII GATC 1 cut(s) 174
NlaIII CATG 3 cut(s) 116, 181, 225
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 248
PkrI GCNGC 1 cut(s) 47
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PstI CTGCAG 2 cut(s) 59, 110
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SapI GCTCTTC 1 cut(s) 162
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 1 cut(s) 174
ScaI AGTACT 1 cut(s) 53
SchI GAGTC 1 cut(s) 16
SetI ASST 3 cut(s) 39, 47, 267
SfcI CTRYAG 3 cut(s) 40, 55, 106
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 172
SspI AATATT 1 cut(s) 248
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 39
TaqII GACCGA 1 cut(s) 84
TasI AATT 1 cut(s) 231
TatI WGTACW 1 cut(s) 51
TscAI CASTG 1 cut(s) 110
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 1 cut(s) 45
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 1 cut(s) 110
XmnI GAANNNNTTC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.