pycom04g13680

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007629
Physical Location & Seq
Reverse (-)
16670459 .. 16672543
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13680.1

Sequence Viewer

Length: 387 bp
ATGGGAAGGCTGTTTGTGACCACTCTTGAGGAAAACATGTATAGCTGCAAGCACTGCAGAACCCATCTCGGTCTTGTGGACGACGTAATCTCTAAGTCTTTTCACTGCAGGCATGGAAAGGCTTATCTTTTCGATAAAGTTGTAAATGTCACACTTGGAGAGCAAGAAGAGCGGATCATGATAACAGGATTGCATACCGTTGCTGACATATTTTGTGTTTCATGTGGCTCAAATGTGGGGTGGAAATATGAGGCTGCACATGAGAAATCCCAGAAGTACAAGGAAGGAAAGTTTATCCTTGAGAGATTTCAGATTCTCGGTCCTGATGGAAGCAACTACTCGATTGCTCTCGAAGCTCAGATTGGTGGAAGCGATGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

129

Amino Acids

14.34

Weight (kDa)

5.84

Isoelectric Point (pI)

22.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yippee-Mis18 PF03226 14 - 105 7e-15 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 182
AfaI GTAC 1 cut(s) 278
AflIII ACRYGT 1 cut(s) 36
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 2 cut(s) 45, 356
AluI AGCT 2 cut(s) 45, 356
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 45, 254
AspS9I GGNCC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 32, 241
BccI CCATC 3 cut(s) 72, 320, 368
BfmI CTRYAG 2 cut(s) 55, 106
BisI GCNGC 2 cut(s) 46, 255
BlsI GCNGC 2 cut(s) 47, 256
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BpuEI CTTGAG 2 cut(s) 47, 320
BseMII CTCAG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 32, 241
BsgI GTGCAG 1 cut(s) 240
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 177
BspMAI CTGCAG 2 cut(s) 59, 110
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 172
BssMI GATC 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 50, 110
BstDEI CTNAG 2 cut(s) 93, 357
BstKTI GATC 1 cut(s) 177
BstMBI GATC 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 54, 169, 353
BstNSI RCATGY 1 cut(s) 40
BstSFI CTRYAG 2 cut(s) 55, 106
BstV1I GCAGC 2 cut(s) 32, 241
BtsI GCAGTG 2 cut(s) 52, 103
BtsIMutI CAGTG 2 cut(s) 52, 103
Cac8I GCNNGC 2 cut(s) 50, 110
CciI TCATGA 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 277
CviAII CATG 5 cut(s) 37, 113, 178, 222, 260
CviJI RGCY 6 cut(s) 10, 45, 122, 228, 254, 356
CviKI_1 RGCY 6 cut(s) 10, 45, 122, 228, 254, 356
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 93, 357
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 320
FaeI CATG 5 cut(s) 40, 116, 181, 225, 263
FaiI YATR 9 cut(s) 38, 42, 114, 179, 195, 209, 223, 249, 261
FatI CATG 5 cut(s) 36, 112, 177, 221, 259
Fnu4HI GCNGC 2 cut(s) 46, 255
Fsp4HI GCNGC 2 cut(s) 46, 255
GluI GCNGC 2 cut(s) 46, 255
Hin1II CATG 5 cut(s) 40, 116, 181, 225, 263
HinfI GANTC 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 79
Hpy188I TCNGA 2 cut(s) 312, 360
Hpy188III TCNNGA 4 cut(s) 26, 178, 323, 350
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 5 cut(s) 48, 57, 108, 193, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 169, 353
HpyF3I CTNAG 2 cut(s) 93, 357
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 5 cut(s) 40, 116, 181, 225, 263
Kzo9I GATC 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 94, 171, 284, 336
Lsp1109I GCAGC 2 cut(s) 32, 241
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 16, 148
MalI GATC 1 cut(s) 176
MbiI CCGCTC 1 cut(s) 172
MboI GATC 1 cut(s) 174
MboII GAAGA 1 cut(s) 179
MnlI CCTC 2 cut(s) 22, 244
MwoI GCNNNNNNNGC 3 cut(s) 54, 169, 353
NdeII GATC 1 cut(s) 174
NlaIII CATG 5 cut(s) 40, 116, 181, 225, 263
NmuCI GTSAC 2 cut(s) 16, 148
NspI RCATGY 1 cut(s) 40
PagI TCATGA 1 cut(s) 177
PciI ACATGT 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 313
PkrI GCNGC 2 cut(s) 47, 256
PscI ACATGT 1 cut(s) 36
PspPI GGNCC 1 cut(s) 320
PstI CTGCAG 2 cut(s) 59, 110
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 162
SatI GCNGC 2 cut(s) 46, 255
Sau3AI GATC 1 cut(s) 174
Sau96I GGNCC 1 cut(s) 320
SetI ASST 3 cut(s) 47, 87, 358
SfcI CTRYAG 2 cut(s) 55, 106
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 26, 299
SmoI CTYRAG 2 cut(s) 26, 299
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 1 cut(s) 199
TaiI ACGT 1 cut(s) 87
TaqI TCGA 3 cut(s) 132, 341, 351
TaqII GACCGA 2 cut(s) 59, 308
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 313
TscAI CASTG 2 cut(s) 59, 110
TseFI GTSAC 2 cut(s) 16, 148
TseI GCWGC 2 cut(s) 45, 254
Tsp45I GTSAC 2 cut(s) 16, 148
TspDTI ATGAA 1 cut(s) 210
TspRI CASTG 2 cut(s) 59, 110
VpaK11BI GGWCC 1 cut(s) 320
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.