Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003073.1

Orthogroup ID

OG0007629

Physical Location & Seq

Genomic Coordinates Reverse (-)

15315 .. 17440

Gene Structure 2126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003073.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atgggaaggctgtttctgctgactcttgaaggacacgtctatagctgcaagtactgcagaacccatcttgctcttgctgatgacattctctctcggtcttttcactgcaggcatggaaaggcttatcttttggataatgttgtaaatgtcacagatggagagaaagaagagcggatcatgataacaggactgcatactgttgttgacatcttttgtgtttcatgtggctcaattgtcgggtggaaatatgaggctgcacatgagaaaagccagaagtacaaggaggggaaatttatccttgagagattcaagattcttggtcctgatggaagcaactactcgatagctcaggaagctcatattggtggaagtgatggtgatgatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Yippee-Mis18

Protein Analysis

129

Amino Acids

14.41

Weight (kDa)

6.14

Isoelectric Point (pI)

23.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08990 AT3G08990 AT3G08990
fragaria_vesca	FvH4_6g11560 FvH4_6g11560 FvH4_6g11560
malus_domestica	MD04G1151100.v1.1 MD12G1165000.v1.1
prunus_persica	Prupe.6G276000_v2.0.a1
pyrus_communis	pycom04g13680 pycom12g15780
rosa_chinensis	RchiOBHm_Chr3g0463261
rosa_laevigata	RLG00000024795
rosa_multiflora	Rmu_sc0002976.1_g000002 Rmu_sc0003073.1_g000006
rosa_roxburghii	Rroxscaffold_6G00416740
rosa_rugosa	Rorug03G0063000 Rorug03G0063100 Rorug03G0063200.1
rosa_samantha	Rh3AG121200 Rh3BG125700 Rh3CG127600 Rh3DG126800
rosa_wichuraiana	Rw3G010290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	172
AciI	CCGC	1 cut(s)	172
AclWI	GGATC	1 cut(s)	182
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	2 cut(s)	53, 278
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	2 cut(s)	29, 310
AjiI	CACGTC	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	2 cut(s)	345, 377
AluBI	AGCT	3 cut(s)	45, 347, 356
AluI	AGCT	3 cut(s)	45, 347, 356
AlwI	GGATC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	45, 254
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	320
AsuHPI	GGTGA	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	32, 241
BccI	CCATC	4 cut(s)	72, 149, 320, 368
BfmI	CTRYAG	3 cut(s)	40, 55, 106
BisI	GCNGC	2 cut(s)	46, 255
BlsI	GCNGC	2 cut(s)	47, 256
BmcAI	AGTACT	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	320
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	320
BmsI	GCATC	1 cut(s)	373
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	320
BseMII	CTCAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	32, 241
BsgI	GTGCAG	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	361
BspHI	TCATGA	1 cut(s)	177
BspMAI	CTGCAG	2 cut(s)	59, 110
BspPI	GGATC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	172
BssMI	GATC	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	162
BstAPI	GCANNNNNTGC	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	110
BstDEI	CTNAG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 54, 353
BstSFI	CTRYAG	3 cut(s)	40, 55, 106
BstV1I	GCAGC	2 cut(s)	32, 241
BtrI	CACGTC	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	103
Cac8I	GCNNGC	1 cut(s)	110
CciI	TCATGA	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	52, 277
CviAII	CATG	4 cut(s)	113, 178, 222, 260
CviJI	RGCY	8 cut(s)	10, 45, 122, 228, 254, 270, 347, 356
CviKI_1	RGCY	8 cut(s)	10, 45, 122, 228, 254, 270, 347, 356
CviQI	GTAC	2 cut(s)	52, 277
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	320
FaeI	CATG	4 cut(s)	116, 181, 225, 263
FaiI	YATR	8 cut(s)	42, 114, 179, 195, 223, 249, 261, 360
FatI	CATG	4 cut(s)	112, 177, 221, 259
Fnu4HI	GCNGC	2 cut(s)	46, 255
Fsp4HI	GCNGC	2 cut(s)	46, 255
GluI	GCNGC	2 cut(s)	46, 255
Hin1II	CATG	4 cut(s)	116, 181, 225, 263
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	3 cut(s)	22, 306, 313
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188III	TCNNGA	5 cut(s)	26, 178, 310, 323, 350
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	5 cut(s)	48, 57, 108, 193, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 54, 353
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	116, 181, 225, 263
Kzo9I	GATC	1 cut(s)	174
LguI	GCTCTTC	1 cut(s)	162
LpnPI	CCDG	5 cut(s)	94, 171, 284, 335, 336
Lsp1109I	GCAGC	2 cut(s)	32, 241
LweI	GCATC	1 cut(s)	373
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	176
MbiI	CCGCTC	1 cut(s)	172
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	179
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	2 cut(s)	231, 290
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	244, 277
MslI	CAYNNNNRTG	1 cut(s)	363
MunI	CAATTG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	16, 54, 353
NdeII	GATC	1 cut(s)	174
NlaIII	CATG	4 cut(s)	116, 181, 225, 263
NmuCI	GTSAC	1 cut(s)	148
PagI	TCATGA	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	306, 313
PkrI	GCNGC	2 cut(s)	47, 256
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspPI	GGNCC	1 cut(s)	320
PstI	CTGCAG	2 cut(s)	59, 110
RsaI	GTAC	2 cut(s)	53, 278
RsaNI	GTAC	2 cut(s)	52, 277
RseI	CAYNNNNRTG	1 cut(s)	363
SapI	GCTCTTC	1 cut(s)	162
SatI	GCNGC	2 cut(s)	46, 255
Sau3AI	GATC	1 cut(s)	174
Sau96I	GGNCC	1 cut(s)	320
ScaI	AGTACT	1 cut(s)	53
SchI	GAGTC	1 cut(s)	16
SetI	ASST	4 cut(s)	39, 47, 349, 358
SfaNI	GCATC	1 cut(s)	373
SfcI	CTRYAG	3 cut(s)	40, 55, 106
SinI	GGWCC	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	231, 290
SsiI	CCGC	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	341
TaqII	GACCGA	1 cut(s)	84
TasI	AATT	2 cut(s)	231, 290
TatI	WGTACW	2 cut(s)	51, 276
TfiI	GAWTC	2 cut(s)	306, 313
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	148
TseI	GCWGC	2 cut(s)	45, 254
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	320
XapI	RAATTY	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.