Prupe.6G276000_v2.0.a1

Belongs to the yippee family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007629
Physical Location & Seq
Reverse (-)
25990380 .. 25992580
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G276000.1

Sequence Viewer

Length: 390 bp
ATGGGAAGGCTGTTTGCGATCAGTCTTGAAGGAAACATCTACAGCTGCAAGCACTGCAAAACCCATCTTGCTCTTGTTGATCACATACTCTCTAAGTCGTTTCACTGCAGACATGGAAAGGCTTATCTTTTTCATAATGTTGTTAATGTCACACTCGGAGAGAAAGAAGAGCGGATCATGATTACTGGATTACATACTGTTGCCGACATATTTTGTGTTTCATGTGGCTCAATGGTGGGGTGGAGATACGAGGCTGCACAGGAGAAAAGCGAGAAGTACAAGGAAGGGAAATTTATCCTTGAGAGATTCCAGATTCTTGGTCCTGATGGAAGCAACTACTCGATAGCTTTGGAAGCTCAGATTGGTGGAAGCGATGCTGATGATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Yippee-Mis18

Protein Analysis

130

Amino Acids

14.37

Weight (kDa)

6.36

Isoelectric Point (pI)

26.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 172
AciI CCGC 1 cut(s) 172
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 290
AfaI GTAC 1 cut(s) 278
AgsI TTSAA 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 345, 377
AluBI AGCT 3 cut(s) 45, 347, 356
AluI AGCT 3 cut(s) 45, 347, 356
AlwI GGATC 1 cut(s) 182
ApeKI GCWGC 2 cut(s) 45, 254
ApoI RAATTY 1 cut(s) 290
AspS9I GGNCC 1 cut(s) 320
AvaII GGWCC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 32, 241
BccI CCATC 2 cut(s) 72, 320
BclI TGATCA 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 40, 106
BisI GCNGC 2 cut(s) 46, 255
BlsI GCNGC 2 cut(s) 47, 256
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmsI GCATC 2 cut(s) 364, 373
BpuEI CTTGAG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 190
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 2 cut(s) 32, 241
BsgI GTGCAG 1 cut(s) 240
Bsp143I GATC 3 cut(s) 18, 79, 174
BspACI CCGC 1 cut(s) 172
BspCNI CTCAG 1 cut(s) 370
BspHI TCATGA 1 cut(s) 177
BspMAI CTGCAG 1 cut(s) 110
BspPI GGATC 1 cut(s) 182
BspQI GCTCTTC 1 cut(s) 162
BsrBI CCGCTC 1 cut(s) 172
BsrI ACTGG 1 cut(s) 190
BssMI GATC 3 cut(s) 18, 79, 174
Bst4CI ACNGT 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 93, 357
BstKTI GATC 3 cut(s) 21, 82, 177
BstMBI GATC 3 cut(s) 18, 79, 174
BstMWI GCNNNNNNNGC 3 cut(s) 54, 353, 383
BstSFI CTRYAG 2 cut(s) 40, 106
BstV1I GCAGC 2 cut(s) 32, 241
BstXI CCANNNNNNTGG 1 cut(s) 317
BtsI GCAGTG 2 cut(s) 52, 103
BtsIMutI CAGTG 2 cut(s) 52, 103
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 177
Cfr13I GGNCC 1 cut(s) 320
Csp6I GTAC 1 cut(s) 277
CviAII CATG 3 cut(s) 113, 178, 222
CviJI RGCY 7 cut(s) 10, 45, 122, 228, 254, 347, 356
CviKI_1 RGCY 7 cut(s) 10, 45, 122, 228, 254, 347, 356
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 93, 357
DpnI GATC 3 cut(s) 20, 81, 176
DpnII GATC 3 cut(s) 18, 79, 174
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Eco47I GGWCC 1 cut(s) 320
FaeI CATG 3 cut(s) 116, 181, 225
FaiI YATR 7 cut(s) 86, 114, 135, 179, 195, 209, 223
FatI CATG 3 cut(s) 112, 177, 221
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 46, 255
Fsp4HI GCNGC 2 cut(s) 46, 255
GluI GCNGC 2 cut(s) 46, 255
Hin1II CATG 3 cut(s) 116, 181, 225
HinfI GANTC 2 cut(s) 306, 313
Hpy188I TCNGA 2 cut(s) 158, 360
Hpy188III TCNNGA 4 cut(s) 26, 178, 310, 323
HpyAV CCTTC 2 cut(s) 23, 278
HpyCH4III ACNGT 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 48, 57, 108, 257
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 353, 383
HpyF3I CTNAG 2 cut(s) 93, 357
Hsp92II CATG 3 cut(s) 116, 181, 225
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 3 cut(s) 18, 79, 174
LguI GCTCTTC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 171, 245, 323, 336
Lsp1109I GCAGC 2 cut(s) 32, 241
LweI GCATC 2 cut(s) 364, 373
MaeIII GTNAC 1 cut(s) 148
MalI GATC 3 cut(s) 20, 81, 176
MbiI CCGCTC 1 cut(s) 172
MboI GATC 3 cut(s) 18, 79, 174
MboII GAAGA 1 cut(s) 179
MluCI AATT 1 cut(s) 290
MnlI CCTC 1 cut(s) 244
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 45
MwoI GCNNNNNNNGC 3 cut(s) 54, 353, 383
NdeII GATC 3 cut(s) 18, 79, 174
NlaIII CATG 3 cut(s) 116, 181, 225
NmuCI GTSAC 1 cut(s) 148
PagI TCATGA 1 cut(s) 177
PciSI GCTCTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 306, 313
PkrI GCNGC 2 cut(s) 47, 256
PspPI GGNCC 1 cut(s) 320
PstI CTGCAG 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 46, 255
Sau3AI GATC 3 cut(s) 18, 79, 174
Sau96I GGNCC 1 cut(s) 320
SetI ASST 3 cut(s) 47, 349, 358
SfaNI GCATC 2 cut(s) 364, 373
SfcI CTRYAG 2 cut(s) 40, 106
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 1 cut(s) 290
SsiI CCGC 1 cut(s) 172
TaaI ACNGT 1 cut(s) 199
TaqI TCGA 1 cut(s) 341
TasI AATT 1 cut(s) 290
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 2 cut(s) 306, 313
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 2 cut(s) 59, 110
TseFI GTSAC 1 cut(s) 148
TseI GCWGC 2 cut(s) 45, 254
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 122, 210
TspRI CASTG 2 cut(s) 59, 110
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.