AT3G09050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014486
Physical Location & Seq
Forward (+)
2764651 .. 2766144
1494 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09050.1

Sequence Viewer

Length: 777 bp
ATGATGAACACACTTCATGCATTTCAGACAACCTTAACACCAAACTTTCATGTTCTTTTCAATGCCTCGAGACATTCTCTTTCCCGACCCCAATTTCTCTGTCTCTCCAAATCGGGAGACGGAACTTCAGATTCTGATTCTGATCCCGACCCTCCAAAACCCGAAGGCGATACTCGCAGGCAAGAACTCTTAGCTAGGATCGCCATGATTCAGACATCGAAGGTCCGTTTGACGGATTTCTTGGACGAGAGATCAGAGTATCTCACCAAGTTTGCTGAAGAAGCCAATGCGGAGTTTGACAAGGTTGGAGAAGACGCCATGAAAGACCTTGACGAAGCTAGCACAAGGATACTGGAGAATATCGAAAGCAAGATGCAAGCTTTTGAGGAATCTGCGGGATTGAACAGATTAGAGATCGAGGAGAACGATAATAAGTTGGCTGAGTTTGAGGAGAAGATTCAAGTAGACAGGAATGAAGGATTGTTCTTTAAAAGCTTACGTGACAAAAAACCAGTGGATAGAGAGCAAGCTAGAGAGGAAACTGAGAAAATACAAGAGGTTACCAAAGAAAGTGCAGGATCAAAGTCAAGAAGGAATATTTACCTCGGGTTAATTGGGATTGTGGTTCTCGCAATTGCTGATTCCTTCGTTTCTTCACCGGATTGGAGAAAAGTCGCAATTCTTGGAGCTATCCTTGTCCCACTGCTCACTCAATTCGTATACGAGCAGACATTATTATCAGAAGCAGATAAGGGAAAGGAAAACAAGAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.25

Weight (kDa)

4.92

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 465, 720
AciI CCGC 2 cut(s) 290, 395
AclWI GGATC 3 cut(s) 137, 206, 586
AcuI CTGAAG 2 cut(s) 111, 297
AcyI GRCGYC 1 cut(s) 315
AfiI CCNNNNNNNGG 1 cut(s) 232
AgsI TTSAA 3 cut(s) 61, 403, 461
AluBI AGCT 6 cut(s) 194, 338, 380, 495, 530, 689
AluI AGCT 6 cut(s) 194, 338, 380, 495, 530, 689
Alw26I GTCTC 3 cut(s) 64, 107, 111
AlwI GGATC 3 cut(s) 137, 206, 586
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 2 cut(s) 67, 605
AspS9I GGNCC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 256, 648
AsuNHI GCTAGC 1 cut(s) 338
AvaI CYCGRG 2 cut(s) 67, 605
AvaII GGWCC 1 cut(s) 223
BbsI GAAGAC 1 cut(s) 318
BciVI GTATCC 1 cut(s) 342
BcoDI GTCTC 3 cut(s) 64, 107, 111
BfaI CTAG 3 cut(s) 195, 339, 531
BfuI GTATCC 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 2 cut(s) 67, 605
BmgT120I GGNCC 1 cut(s) 223
BmsI GCATC 1 cut(s) 363
BmtI GCTAGC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 61, 93
BpmI CTGGAG 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 604
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 357, 512
Bse8I GATNNNNATC 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 2 cut(s) 432, 534
BseNI ACTGG 2 cut(s) 357, 512
BseRI GAGGAG 2 cut(s) 434, 464
BsgI GTGCAG 1 cut(s) 594
BsiHKCI CYCGRG 2 cut(s) 67, 605
BsiSI CCGG 1 cut(s) 659
BslFI GGGAC 1 cut(s) 683
BslI CCNNNNNNNGG 1 cut(s) 232
BsmAI GTCTC 3 cut(s) 64, 107, 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 683
BsoBI CYCGRG 2 cut(s) 67, 605
Bsp143I GATC 5 cut(s) 142, 198, 251, 414, 578
BspACI CCGC 2 cut(s) 290, 395
BspCNI CTCAG 2 cut(s) 433, 535
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 3 cut(s) 137, 206, 586
BsrI ACTGG 2 cut(s) 357, 512
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 5 cut(s) 142, 198, 251, 414, 578
BssNAI GTATAC 1 cut(s) 721
BssNI GRCGYC 1 cut(s) 315
Bst1107I GTATAC 1 cut(s) 721
BstACI GRCGYC 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 4 cut(s) 179, 340, 378, 528
BstDEI CTNAG 3 cut(s) 190, 441, 543
BstEII GGTNACC 1 cut(s) 559
BstKTI GATC 5 cut(s) 145, 201, 254, 417, 581
BstMAI GTCTC 3 cut(s) 64, 107, 111
BstMBI GATC 5 cut(s) 142, 198, 251, 414, 578
BstMWI GCNNNNNNNGC 3 cut(s) 174, 200, 281
BstPI GGTNACC 1 cut(s) 559
BstV2I GAAGAC 1 cut(s) 318
BstZ17I GTATAC 1 cut(s) 721
BsuI GTATCC 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 701
BtsIMutI CAGTG 2 cut(s) 519, 701
Cac8I GCNNGC 4 cut(s) 179, 340, 378, 528
CaiI CAGNNNCTG 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 223
CseI GACGC 1 cut(s) 323
CviAII CATG 4 cut(s) 17, 50, 205, 319
CviJI RGCY 8 cut(s) 194, 284, 338, 380, 440, 495, 530, 689
CviKI_1 RGCY 8 cut(s) 194, 284, 338, 380, 440, 495, 530, 689
DdeI CTNAG 3 cut(s) 190, 441, 543
DpnI GATC 5 cut(s) 144, 200, 253, 416, 580
DpnII GATC 5 cut(s) 142, 198, 251, 414, 578
DraI TTTAAA 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 111, 297
Eco88I CYCGRG 2 cut(s) 67, 605
Eco91I GGTNACC 1 cut(s) 559
EcoO65I GGTNACC 1 cut(s) 559
EcoT22I ATGCAT 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 20, 53, 208, 322
FaiI YATR 5 cut(s) 18, 51, 206, 320, 721
FaqI GGGAC 1 cut(s) 683
FatI CATG 4 cut(s) 16, 49, 204, 318
FauI CCCGC 1 cut(s) 388
FblI GTMKAC 2 cut(s) 465, 720
FspBI CTAG 3 cut(s) 195, 339, 531
GsuI CTGGAG 1 cut(s) 374
HapII CCGG 1 cut(s) 659
HgaI GACGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 20, 53, 208, 322
HindIII AAGCTT 2 cut(s) 378, 493
HinfI GANTC 6 cut(s) 131, 137, 208, 389, 457, 641
HpaII CCGG 1 cut(s) 659
HphI GGTGA 2 cut(s) 256, 648
Hpy166II GTNNAC 2 cut(s) 466, 721
Hpy188I TCNGA 7 cut(s) 27, 130, 136, 142, 213, 256, 742
Hpy188III TCNNGA 5 cut(s) 69, 84, 114, 146, 588
Hpy8I GTNNAC 2 cut(s) 466, 721
HpyAV CCTTC 6 cut(s) 158, 214, 470, 585, 655, 763
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 3 cut(s) 20, 376, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 200, 281
HpyF3I CTNAG 3 cut(s) 190, 441, 543
HpySE526I ACGT 1 cut(s) 499
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 20, 53, 208, 322
Kzo9I GATC 5 cut(s) 142, 198, 251, 414, 578
LmnI GCTCC 1 cut(s) 686
LpnPI CCDG 6 cut(s) 163, 338, 454, 525, 561, 672
LweI GCATC 1 cut(s) 363
MaeI CTAG 3 cut(s) 195, 339, 531
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 500, 559
MalI GATC 5 cut(s) 144, 200, 253, 416, 580
MboI GATC 5 cut(s) 142, 198, 251, 414, 578
MboII GAAGA 4 cut(s) 290, 323, 466, 645
MfeI CAATTG 1 cut(s) 633
MluCI AATT 5 cut(s) 92, 612, 633, 678, 713
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 8 cut(s) 76, 162, 379, 412, 442, 529, 550, 614
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 3 cut(s) 35, 489, 611
MspI CCGG 1 cut(s) 659
MunI CAATTG 1 cut(s) 633
MwoI GCNNNNNNNGC 3 cut(s) 174, 200, 281
NdeII GATC 5 cut(s) 142, 198, 251, 414, 578
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 20, 53, 208, 322
NmuCI GTSAC 1 cut(s) 500
NsiI ATGCAT 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 423
PfeI GAWTC 6 cut(s) 131, 137, 208, 389, 457, 641
Ppu21I YACGTR 1 cut(s) 500
PspEI GGTNACC 1 cut(s) 559
PspPI GGNCC 1 cut(s) 223
PstNI CAGNNNCTG 1 cut(s) 134
SaqAI TTAA 3 cut(s) 35, 489, 611
Sau3AI GATC 5 cut(s) 142, 198, 251, 414, 578
Sau96I GGNCC 1 cut(s) 223
SfaNI GCATC 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 67
SinI GGWCC 1 cut(s) 223
SlaI CTCGAG 1 cut(s) 67
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 5 cut(s) 92, 612, 633, 678, 713
SsiI CCGC 2 cut(s) 290, 395
SspI AATATT 1 cut(s) 598
SspMI CTAG 3 cut(s) 195, 339, 531
TaiI ACGT 1 cut(s) 502
TaqI TCGA 4 cut(s) 68, 218, 363, 417
TasI AATT 5 cut(s) 92, 612, 633, 678, 713
TfiI GAWTC 6 cut(s) 131, 137, 208, 389, 457, 641
Tru1I TTAA 3 cut(s) 35, 489, 611
Tru9I TTAA 3 cut(s) 35, 489, 611
TscAI CASTG 2 cut(s) 519, 708
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 5 cut(s) 5, 20, 38, 335, 489
TspGWI ACGGA 3 cut(s) 135, 215, 248
TspRI CASTG 2 cut(s) 519, 708
VpaK11BI GGWCC 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 67
XmiI GTMKAC 2 cut(s) 465, 720
XspI CTAG 3 cut(s) 195, 339, 531
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.