Rorug03G0067800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014486
Physical Location & Seq
Forward (+)
5181370 .. 5182614
1245 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0067800.1

Sequence Viewer

Length: 1245 bp
ATGGCAGAGTTCAAATTGCCAAGAGCGATGGTGGTACAAATCTTATCCAGAATGCCTCCGAAATCTCTAATGCGATTCAAGTGCATTCATAAGTCATGGAATTCTCTGATCAATAGTCGCCATGTCGTAGCTAAGCATCTCCACTTTAACAACAATCTATCCTCCTCCACTACCATCCTTCTAAGGCGTCCTGTAATTTGGAGAACCGAAACTAAGAATGAGGAAATCGTTTGTTCTTTGCTTACTCTTCGCAATGAGAATAATGGTGATGAGGATAACCTAGATTATGACATCGAGGACATCCAATTTCCGCCTTCAATTGGTCTAAAAACTAGGGCACAATTTATTGAGAATCCTGGTCCAACTTATGAATGTGCAGATATTGTGGGTCATTGTGGTGGGATAATCTGTCTCTCTCTTTATGCTGCAGGCGACCTTGTCTTATACAATCCCGCAATTAGGGAATTCAAGCTTATACCCGAGCCATGCCTCCCACGCCCCCGTCAGTTTTATTTCCGTTGTGATGCATTTGGTTATGATCCCAAGTCTGAAGATTATATACTTGTTAACGTTGCAAGTTATGGTGAAGAAAAATACGGTGATCGTCTTGTTACTGAACCTCTGAGAGCAGAGATGTACACACTGGGTACTGATTCTTGGAGAGAGATCAAGATTCACAATTTGGAAACCGAAACTACTATGTTTCGGCCTAATCATTTCCAGGTGTATTTCAAGGGAAACTGTTACGGGTTGGCAGAAGAAATCAAGAAGGAATTCATCTCATCGTTTGACAGTCTTGAGGAGTATTACATTAGGGAAGTAATCGTTTGGTTTGACACGAGCAATCGGGTTTTCCATAGTGCATTGACTCCTGATTGTTTGTATCGCTATCCAGCGCATGACTTCAATCTTACAGTGTGGAACAATTGCGTTGCTCTTTTTGGCTATTATCGTGGTGGAAGTAAACCCTTTGAAATTTGGGTGATGGGTGAATCTGATGGTTTCACTTGTTCATGGATAAAGCACCTATCGATTGACATTGTGGAATCTCCTCAACCATTGGTACTTTGGGAGAGCAACCAGTCTCTTTTGGTTTCCCCGCGTATCCGAATAGCCTTGTACAGCTTTGCAACCAAAACGTTCAAGTATTTACCACTTTGTGCTGCTGAACATTTTGATGCCATACCTTTTGTGAATAGTATAGTTCCACTCAATAGGGACCTAGTTTGTGTTGATATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

47.86

Weight (kDa)

5.72

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 41 1.1e-07 F-box domain
FBA_1 PF07734 122 - 371 1.2e-20 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1102
AciI CCGC 3 cut(s) 311, 453, 1100
AclI AACGTT 2 cut(s) 570, 1139
AclWI GGATC 1 cut(s) 533
AcsI RAATTY 4 cut(s) 100, 464, 773, 975
AcuI CTGAAG 1 cut(s) 570
AcyI GRCGYC 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 1160
AfaI GTAC 5 cut(s) 36, 638, 649, 1065, 1121
AfiI CCNNNNNNNGG 2 cut(s) 320, 459
AgsI TTSAA 8 cut(s) 13, 79, 318, 469, 733, 907, 974, 1144
AjnI CCWGG 2 cut(s) 355, 720
AluBI AGCT 3 cut(s) 131, 472, 1125
AluI AGCT 3 cut(s) 131, 472, 1125
Alw26I GTCTC 2 cut(s) 416, 1089
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 479
AoxI GGCC 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 425, 1163
ApoI RAATTY 4 cut(s) 100, 464, 773, 975
Asp700I GAANNNNTTC 1 cut(s) 773
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 2 cut(s) 359, 1219
AsuHPI GGTGA 5 cut(s) 278, 596, 611, 994, 1001
AvaI CYCGRG 1 cut(s) 479
AvaII GGWCC 2 cut(s) 359, 1219
BaeGI GKGCMC 1 cut(s) 340
BarI GAAGNNNNNNTAC 2 cut(s) 543, 575
BauI CACGAG 1 cut(s) 838
BbvI GCAGC 2 cut(s) 412, 1150
BccI CCATC 4 cut(s) 22, 182, 979, 992
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 2 cut(s) 357, 722
BciVI GTATCC 1 cut(s) 1115
BclI TGATCA 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 416, 1089
BfaI CTAG 3 cut(s) 281, 333, 1223
BfmI CTRYAG 1 cut(s) 426
BfuI GTATCC 1 cut(s) 1115
BisI GCNGC 2 cut(s) 426, 1164
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 2 cut(s) 427, 1165
Bme1390I CCNGG 2 cut(s) 357, 722
Bme18I GGWCC 2 cut(s) 359, 1219
BmeT110I CYCGRG 1 cut(s) 479
BmgT120I GGNCC 2 cut(s) 359, 1219
BmiI GGNNCC 1 cut(s) 1220
BmrFI CCNGG 2 cut(s) 357, 722
BmrI ACTGGG 1 cut(s) 653
BmsI GCATC 3 cut(s) 145, 514, 1168
BmuI ACTGGG 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 818
Bsa29I ATCGAT 1 cut(s) 1031
BsaHI GRCGYC 1 cut(s) 187
Bsc4I CCNNNNNNNGG 2 cut(s) 320, 459
Bse1I ACTGG 2 cut(s) 648, 1081
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 357, 722
BseCI ATCGAT 1 cut(s) 1031
BseGI GGATG 2 cut(s) 174, 300
BseLI CCNNNNNNNGG 2 cut(s) 320, 459
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 614
BseNI ACTGG 2 cut(s) 648, 1081
BseRI GAGGAG 3 cut(s) 154, 815, 1041
BseSI GKGCMC 1 cut(s) 340
BseXI GCAGC 2 cut(s) 412, 1150
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 1 cut(s) 709
BshVI ATCGAT 1 cut(s) 1031
BsiHKCI CYCGRG 1 cut(s) 479
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 2 cut(s) 320, 459
BsmAI GTCTC 2 cut(s) 416, 1089
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 2 cut(s) 57, 84
BsnI GGCC 1 cut(s) 709
BsoBI CYCGRG 1 cut(s) 479
Bsp1286I GDGCHC 1 cut(s) 340
Bsp1407I TGTACA 2 cut(s) 636, 1119
Bsp143I GATC 4 cut(s) 108, 538, 601, 666
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 3 cut(s) 311, 453, 1100
BspANI GGCC 1 cut(s) 709
BspCNI CTCAG 1 cut(s) 615
BspDI ATCGAT 1 cut(s) 1031
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 1 cut(s) 1220
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 259
BsrGI TGTACA 2 cut(s) 636, 1119
BsrI ACTGG 2 cut(s) 648, 1081
BssMI GATC 4 cut(s) 108, 538, 601, 666
BssNI GRCGYC 1 cut(s) 187
BssSI CACGAG 1 cut(s) 838
Bst2BI CACGAG 1 cut(s) 838
Bst2UI CCWGG 2 cut(s) 357, 722
Bst4CI ACNGT 4 cut(s) 599, 743, 794, 916
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 187
BstAUI TGTACA 2 cut(s) 636, 1119
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 4 cut(s) 132, 182, 213, 623
BstF5I GGATG 2 cut(s) 174, 300
BstFNI CGCG 1 cut(s) 1102
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 4 cut(s) 111, 541, 604, 669
BstMAI GTCTC 2 cut(s) 416, 1089
BstMBI GATC 4 cut(s) 108, 538, 601, 666
BstMWI GCNNNNNNNGC 1 cut(s) 495
BstNI CCWGG 2 cut(s) 357, 722
BstSCI CCNGG 2 cut(s) 355, 720
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 340
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 2 cut(s) 412, 1150
Bsu15I ATCGAT 1 cut(s) 1031
BsuI GTATCC 1 cut(s) 1115
BsuRI GGCC 1 cut(s) 709
BsuTUI ATCGAT 1 cut(s) 1031
BtgZI GCGATG 1 cut(s) 41
BtsCI GGATG 2 cut(s) 174, 300
BtsIMutI CAGTG 2 cut(s) 641, 921
Cac8I GCNNGC 1 cut(s) 430
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 2 cut(s) 359, 1219
ClaI ATCGAT 1 cut(s) 1031
CseI GACGC 1 cut(s) 176
Csp6I GTAC 5 cut(s) 35, 637, 648, 1064, 1120
CviAII CATG 5 cut(s) 96, 122, 486, 899, 1014
CviJI RGCY 7 cut(s) 131, 472, 484, 709, 945, 1115, 1125
CviKI_1 RGCY 7 cut(s) 131, 472, 484, 709, 945, 1115, 1125
CviQI GTAC 5 cut(s) 35, 637, 648, 1064, 1120
DdeI CTNAG 4 cut(s) 132, 182, 213, 623
DpnI GATC 4 cut(s) 110, 540, 603, 668
DpnII GATC 4 cut(s) 108, 538, 601, 666
DraIII CACNNNGTG 1 cut(s) 1160
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 359, 1219
Eco57I CTGAAG 1 cut(s) 570
Eco88I CYCGRG 1 cut(s) 479
EcoO109I RGGNCCY 1 cut(s) 1219
EcoRI GAATTC 3 cut(s) 100, 464, 773
EcoRII CCWGG 2 cut(s) 355, 720
EcoT22I ATGCAT 1 cut(s) 529
FaeI CATG 5 cut(s) 99, 125, 489, 902, 1017
FaqI GGGAC 1 cut(s) 1232
FatI CATG 5 cut(s) 95, 121, 485, 898, 1013
FauI CCCGC 2 cut(s) 460, 1107
FbaI TGATCA 1 cut(s) 108
Fnu4HI GCNGC 2 cut(s) 426, 1164
FokI GGATG 2 cut(s) 161, 287
Fsp4HI GCNGC 2 cut(s) 426, 1164
FspBI CTAG 3 cut(s) 281, 333, 1223
GlaI GCGC 1 cut(s) 897
GluI GCNGC 2 cut(s) 426, 1164
HaeIII GGCC 1 cut(s) 709
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 898
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 5 cut(s) 99, 125, 489, 902, 1017
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 7 cut(s) 75, 352, 653, 673, 868, 992, 1046
HpaI GTTAAC 1 cut(s) 568
HphI GGTGA 5 cut(s) 278, 596, 611, 994, 1001
Hpy166II GTNNAC 3 cut(s) 568, 639, 965
Hpy188I TCNGA 6 cut(s) 60, 108, 550, 624, 997, 1109
Hpy188III TCNNGA 6 cut(s) 48, 670, 766, 797, 872, 1242
Hpy8I GTNNAC 3 cut(s) 568, 639, 965
HpyAV CCTTC 3 cut(s) 188, 324, 763
HpyCH4III ACNGT 4 cut(s) 599, 743, 794, 916
HpyCH4IV ACGT 2 cut(s) 570, 1139
HpyCH4V TGCA 7 cut(s) 84, 377, 428, 527, 575, 863, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 495
HpyF3I CTNAG 4 cut(s) 132, 182, 213, 623
HpySE526I ACGT 2 cut(s) 570, 1139
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 5 cut(s) 99, 125, 489, 902, 1017
HspAI GCGC 1 cut(s) 896
Ksp22I TGATCA 1 cut(s) 108
KspAI GTTAAC 1 cut(s) 568
Kzo9I GATC 4 cut(s) 108, 538, 601, 666
Lsp1109I GCAGC 2 cut(s) 412, 1150
LweI GCATC 3 cut(s) 145, 514, 1168
MaeI CTAG 3 cut(s) 281, 333, 1223
MaeII ACGT 2 cut(s) 570, 1139
MaeIII GTNAC 2 cut(s) 610, 743
MalI GATC 4 cut(s) 110, 540, 603, 668
MboI GATC 4 cut(s) 108, 538, 601, 666
MboII GAAGA 4 cut(s) 239, 563, 599, 770
MfeI CAATTG 2 cut(s) 318, 925
MhlI GDGCHC 1 cut(s) 340
MlyI GAGTC 1 cut(s) 862
MmeI TCCRAC 1 cut(s) 386
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 2 cut(s) 147, 567
MslI CAYNNNNRTG 2 cut(s) 396, 1176
MspR9I CCNGG 2 cut(s) 357, 722
MunI CAATTG 2 cut(s) 318, 925
Mva1269I GAATGC 2 cut(s) 57, 84
MvaI CCWGG 2 cut(s) 357, 722
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 1 cut(s) 495
NdeII GATC 4 cut(s) 108, 538, 601, 666
NlaIII CATG 5 cut(s) 99, 125, 489, 902, 1017
NlaIV GGNNCC 1 cut(s) 1220
NsiI ATGCAT 1 cut(s) 529
PctI GAATGC 2 cut(s) 57, 84
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 6 cut(s) 75, 352, 653, 673, 992, 1046
PflFI GACNNNGTC 1 cut(s) 437
PkrI GCNGC 2 cut(s) 427, 1165
PleI GAGTC 1 cut(s) 862
PpsI GAGTC 1 cut(s) 862
PpuMI RGGWCCY 1 cut(s) 1219
Psp1406I AACGTT 2 cut(s) 570, 1139
Psp5II RGGWCCY 1 cut(s) 1219
Psp6I CCWGG 2 cut(s) 355, 720
PspGI CCWGG 2 cut(s) 355, 720
PspN4I GGNNCC 1 cut(s) 1220
PspPI GGNCC 2 cut(s) 359, 1219
PspPPI RGGWCCY 1 cut(s) 1219
PstI CTGCAG 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 437
RsaI GTAC 5 cut(s) 36, 638, 649, 1065, 1121
RsaNI GTAC 5 cut(s) 35, 637, 648, 1064, 1120
RseI CAYNNNNRTG 2 cut(s) 396, 1176
SaqAI TTAA 2 cut(s) 147, 567
SatI GCNGC 2 cut(s) 426, 1164
Sau3AI GATC 4 cut(s) 108, 538, 601, 666
Sau96I GGNCC 2 cut(s) 359, 1219
SchI GAGTC 1 cut(s) 862
ScrFI CCNGG 2 cut(s) 357, 722
SduI GDGCHC 1 cut(s) 340
SfaNI GCATC 3 cut(s) 145, 514, 1168
SfcI CTRYAG 1 cut(s) 426
SinI GGWCC 2 cut(s) 359, 1219
SmiMI CAYNNNNRTG 2 cut(s) 396, 1176
SmlI CTYRAG 1 cut(s) 797
SmoI CTYRAG 1 cut(s) 797
SsiI CCGC 3 cut(s) 311, 453, 1100
SspMI CTAG 3 cut(s) 281, 333, 1223
StyD4I CCNGG 2 cut(s) 355, 720
TaaI ACNGT 4 cut(s) 599, 743, 794, 916
TaiI ACGT 2 cut(s) 573, 1142
TaqI TCGA 2 cut(s) 294, 1031
TatI WGTACW 2 cut(s) 636, 1119
TfiI GAWTC 6 cut(s) 75, 352, 653, 673, 992, 1046
Tru1I TTAA 2 cut(s) 147, 567
Tru9I TTAA 2 cut(s) 147, 567
TscAI CASTG 2 cut(s) 648, 921
TseI GCWGC 2 cut(s) 425, 1163
TspDTI ATGAA 4 cut(s) 77, 384, 766, 1002
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 648, 921
Tth111I GACNNNGTC 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 359, 1219
XapI RAATTY 4 cut(s) 100, 464, 773, 975
XcmI CCANNNNNNNNNTGG 1 cut(s) 1065
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 3 cut(s) 281, 333, 1223
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.