Rroxscaffold_6G00416280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014486
Physical Location & Seq
Reverse (-)
38319251 .. 38320285
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416280.1

Sequence Viewer

Length: 501 bp
ATGATTGCCCTCAAACACATTCAAATCTCTTTCAACGCCACCAGACATACCATTTTAATGCCGGGAAGATTTCCCAGCACAAAGAACTCCATCTTGCGCTTCAGCAAGTCCAATGATTCCGATTCTGAATCAGAGACTCCTTCGCCTGAGGGAGATACTCGCAAGCAAGAGCTGCTGGTAAGGATAGCAATGCTTCAAGCTCAGAAAGTCCGGCTTGCGGATTACTTAGATGAAAGATCAGAATATCTTACTAAATTCGGAGAAGATGCCACTGCGGAGTTTGACAAGATTGGAGAAGATGCCCGCAAAGGACTGGATGAAGCCAGTGCTCGGATAATGGAGAATATGGACAGCCGCATGCAGGCGTTTGAGGAATCTACAGGAGTGAACATATCGGAGATCGAAGAAAATGAAAATGAGTTAGCAGCATTCGAAGATCAGATTGAAAAAGACCGAAATGAAGGGCTATTTTTCAAGAATCTGACGCAGGGAAACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.87

Weight (kDa)

4.68

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 218, 275, 304, 355
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 217, 330, 361
AgsI TTSAA 5 cut(s) 23, 34, 197, 446, 475
AluBI AGCT 2 cut(s) 172, 200
AluI AGCT 2 cut(s) 172, 200
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 128
ApeKI GCWGC 2 cut(s) 172, 425
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 63
AsuII TTCGAA 1 cut(s) 432
AxyI CCTNAGG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 159, 437
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 3 cut(s) 173, 355, 426
BlsI GCNGC 3 cut(s) 174, 356, 427
Bme1390I CCNGG 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 256, 289
Bpu14I TTCGAA 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 330, 361
Bse1I ACTGG 2 cut(s) 318, 324
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 195
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 3 cut(s) 217, 330, 361
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 138, 215
BseNI ACTGG 2 cut(s) 318, 324
BseXI GCAGC 2 cut(s) 159, 437
BseYI CCCAGC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 2 cut(s) 62, 211
BslI CCNNNNNNNGG 3 cut(s) 217, 330, 361
BsmAI GTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 428
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 3 cut(s) 236, 399, 436
BspACI CCGC 4 cut(s) 218, 275, 304, 355
BspCNI CTCAG 2 cut(s) 139, 214
BspT104I TTCGAA 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 318, 324
BssMI GATC 3 cut(s) 236, 399, 436
BstAPI GCANNNNNTGC 1 cut(s) 172
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 5 cut(s) 164, 216, 304, 359, 363
BstDEI CTNAG 3 cut(s) 147, 201, 226
BstF5I GGATG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 3 cut(s) 239, 402, 439
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 236, 399, 436
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 159, 437
Bsu36I CCTNAGG 1 cut(s) 147
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 331
Cac8I GCNNGC 5 cut(s) 164, 216, 304, 359, 363
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 493
CviAII CATG 1 cut(s) 358
CviJI RGCY 6 cut(s) 172, 200, 214, 323, 354, 466
CviKI_1 RGCY 6 cut(s) 172, 200, 214, 323, 354, 466
DdeI CTNAG 3 cut(s) 147, 201, 226
DpnI GATC 3 cut(s) 238, 401, 438
DpnII GATC 3 cut(s) 236, 399, 436
Eco57I CTGAAG 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 147
FaeI CATG 1 cut(s) 361
FaiI YATR 5 cut(s) 48, 347, 359, 392, 499
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 357
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 3 cut(s) 173, 355, 426
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 173, 355, 426
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 173, 355, 426
GsaI CCCAGC 1 cut(s) 78
HapII CCGG 2 cut(s) 62, 211
HgaI GACGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HinfI GANTC 6 cut(s) 116, 122, 128, 136, 374, 478
HpaII CCGG 2 cut(s) 62, 211
Hpy166II GTNNAC 1 cut(s) 388
Hpy188III TCNNGA 1 cut(s) 475
Hpy8I GTNNAC 1 cut(s) 388
HpyAV CCTTC 2 cut(s) 150, 455
HpyCH4V TGCA 1 cut(s) 361
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 3 cut(s) 147, 201, 226
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 3 cut(s) 236, 399, 436
Lsp1109I GCAGC 2 cut(s) 159, 437
LweI GCATC 2 cut(s) 256, 289
MalI GATC 3 cut(s) 238, 401, 438
MboI GATC 3 cut(s) 236, 399, 436
MboII GAAGA 5 cut(s) 78, 275, 308, 416, 446
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 1 cut(s) 254
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 3 cut(s) 20, 142, 364
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 56
MspI CCGG 2 cut(s) 62, 211
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 63
NdeII GATC 3 cut(s) 236, 399, 436
NlaIII CATG 1 cut(s) 361
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 432
PaeI GCATGC 1 cut(s) 361
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 5 cut(s) 116, 122, 128, 374, 478
PkrI GCNGC 3 cut(s) 174, 356, 427
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 3 cut(s) 173, 355, 426
Sau3AI GATC 3 cut(s) 236, 399, 436
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 331
SetI ASST 2 cut(s) 174, 202
SfaNI GCATC 2 cut(s) 256, 289
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 432
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 361
Sse9I AATT 1 cut(s) 254
SsiI CCGC 4 cut(s) 218, 275, 304, 355
StyD4I CCNGG 1 cut(s) 61
TaqI TCGA 2 cut(s) 402, 432
TaqII GACCGA 1 cut(s) 468
TasI AATT 1 cut(s) 254
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 5 cut(s) 116, 122, 128, 374, 478
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TscAI CASTG 2 cut(s) 277, 331
TseI GCWGC 2 cut(s) 172, 425
TspDTI ATGAA 4 cut(s) 246, 333, 426, 474
TspRI CASTG 2 cut(s) 277, 331
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.