Rorug03G0067900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014486
Physical Location & Seq
Reverse (-)
5182953 .. 5187712
4760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0067900.1

Sequence Viewer

Length: 846 bp
ATGAGTAGCCGATCGAGTCGTACTATCTACGTGGGGAATCTGCCTGGAGATATTCGTATGAGAGAAATTGAAGATTTATTCATGAAGTATGGACCGATTGTTGACATTGATCTTAAGATCCCTCCCAGACCACCAGGTTATGCTTTTATTGAGTTTGAAGATCCACGTGATGCTGATGATGCGATTTATGGCCGGGATGGTTGCAACTTTGACGGGTATCGCGTACGGGTTGAACTAGCACATGGTAGACGTGGATATTCATCATCAGGTGATCGATTCAGCAGTTACAGTCGTAGTAGCAGTAGCCGTGGAGCTTCCCGCCATTCTGACTATCGTGTGCTGGTCACTGGATTACCTGCTTCTGCTTCATGGCAGGATCTGAAGGATCACATGCGTCAAGCTGGAGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCCGTGGCATGACGGGAGTTGTAGACTACACAAATTACGATGACATGAAATATGCGATCAGGAAATTGGATGATTCTGAATTTAGAAATGCTTTTTCTCGGTCCTACATACGGGTCGAGGAATATGATTCTAGTCGTGGGTATTCCAGAAGCCCCAGTTATGACTCAAGGCAGAGCTACTCTAGAAGTCCCAGTCATAGTCCACATGTGTCAAGAAGTCGCAGTCGCAGCCGTAGCTTTGGGGGCCAGAGCAGAAGCATATCACCGGATGTGGAATATTCACGCCGCTCTCCTAGGTCTGCCTCACCTTCCCCTTCAAGATCTCGGTCAAGATCTAGATCTCCTGTTTGTTCTCCTTATTATGGAACTCTTCGCAGGTCGCCATCAAGATCCAGAAGCTTATCCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

32.1

Weight (kDa)

10.05

Isoelectric Point (pI)

103.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 9 - 75 4.4e-16 RNA recognition motif
RRM_1 PF00076 113 - 175 1.3e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 364, 801
AccBSI CCGCTC 1 cut(s) 723
AccI GTMKAC 2 cut(s) 247, 459
AccII CGCG 1 cut(s) 222
AciI CCGC 3 cut(s) 319, 436, 721
AclWI GGATC 5 cut(s) 112, 155, 384, 393, 819
AcoI YGGCCR 1 cut(s) 190
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 1 cut(s) 401
AcvI CACGTG 1 cut(s) 167
AfaI GTAC 2 cut(s) 22, 225
AfiI CCNNNNNNNGG 2 cut(s) 546, 797
AflII CTTAAG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 640
AgsI TTSAA 4 cut(s) 71, 158, 233, 753
AjiI CACGTC 1 cut(s) 251
AjnI CCWGG 2 cut(s) 43, 133
AluBI AGCT 5 cut(s) 314, 401, 612, 672, 834
AluI AGCT 5 cut(s) 314, 401, 612, 672, 834
AlwI GGATC 5 cut(s) 112, 155, 384, 393, 819
AlwNI CAGNNNCTG 1 cut(s) 379
AoxI GGCC 2 cut(s) 190, 679
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 1 cut(s) 515
AspA2I CCTAGG 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 92, 537, 679
AsuC2I CCSGG 1 cut(s) 194
AsuHPI GGTGA 3 cut(s) 281, 690, 732
AvaII GGWCC 2 cut(s) 92, 537
AvrII CCTAGG 1 cut(s) 728
BbrPI CACGTG 1 cut(s) 167
BbvI GCAGC 1 cut(s) 675
BccI CCATC 2 cut(s) 191, 826
BceAI ACGGC 3 cut(s) 291, 423, 651
BciT130I CCWGG 2 cut(s) 45, 135
BcnI CCSGG 1 cut(s) 194
BfaI CTAG 5 cut(s) 236, 567, 618, 729, 771
BfrI CTTAAG 1 cut(s) 113
BfuAI ACCTGC 2 cut(s) 364, 801
BglII AGATCT 3 cut(s) 755, 767, 773
BisI GCNGC 2 cut(s) 664, 721
BlnI CCTAGG 1 cut(s) 728
BlsI GCNGC 2 cut(s) 665, 722
Bme1390I CCNGG 3 cut(s) 45, 135, 194
Bme18I GGWCC 2 cut(s) 92, 537
BmgBI CACGTC 1 cut(s) 251
BmgT120I GGNCC 3 cut(s) 92, 537, 679
BmiI GGNNCC 1 cut(s) 680
BmrFI CCNGG 3 cut(s) 45, 135, 194
BmrI ACTGGG 2 cut(s) 585, 621
BmsI GCATC 2 cut(s) 160, 169
BmuI ACTGGG 2 cut(s) 585, 621
BpmI CTGGAG 2 cut(s) 66, 423
BpuEI CTTGAG 1 cut(s) 586
BpuMI CCSGG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 274
BsaAI YACGTR 2 cut(s) 31, 167
BsaBI GATNNNNATC 2 cut(s) 259, 772
BsaJI CCNNGG 3 cut(s) 307, 439, 728
BsaWI WCCGGW 1 cut(s) 700
Bsc4I CCNNNNNNNGG 2 cut(s) 546, 797
Bse1I ACTGG 3 cut(s) 352, 591, 627
Bse8I GATNNNNATC 2 cut(s) 259, 772
BseBI CCWGG 2 cut(s) 45, 135
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 3 cut(s) 307, 439, 728
BseGI GGATG 3 cut(s) 202, 511, 709
BseJI GATNNNNATC 2 cut(s) 259, 772
BseLI CCNNNNNNNGG 2 cut(s) 546, 797
BseNI ACTGG 3 cut(s) 352, 591, 627
BseXI GCAGC 1 cut(s) 675
Bsh1236I CGCG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 2 cut(s) 192, 681
BshVI ATCGAT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 2 cut(s) 193, 701
BsiWI CGTACG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 546, 797
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 192, 681
BspACI CCGC 3 cut(s) 319, 436, 721
BspANI GGCC 2 cut(s) 192, 681
BspDI ATCGAT 1 cut(s) 274
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 680
BspMI ACCTGC 2 cut(s) 364, 801
BspPI GGATC 5 cut(s) 112, 155, 384, 393, 819
BspTI CTTAAG 1 cut(s) 113
BsrBI CCGCTC 1 cut(s) 723
BsrI ACTGG 3 cut(s) 352, 591, 627
BssECI CCNNGG 3 cut(s) 307, 439, 728
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 2 cut(s) 45, 135
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 810
BstAFI CTTAAG 1 cut(s) 113
BstBAI YACGTR 2 cut(s) 31, 167
BstDSI CCRYGG 2 cut(s) 307, 439
BstF5I GGATG 3 cut(s) 202, 511, 709
BstFNI CGCG 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 14
BstMWI GCNNNNNNNGC 4 cut(s) 179, 663, 669, 678
BstNI CCWGG 2 cut(s) 45, 135
BstNSI RCATGY 2 cut(s) 394, 644
BstSCI CCNGG 3 cut(s) 43, 133, 192
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
BstYI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
Bsu15I ATCGAT 1 cut(s) 274
BsuRI GGCC 2 cut(s) 192, 681
BsuTUI ATCGAT 1 cut(s) 274
BtgI CCRYGG 2 cut(s) 307, 439
BtrI CACGTC 1 cut(s) 251
BtsCI GGATG 3 cut(s) 202, 511, 709
BtsIMutI CAGTG 1 cut(s) 345
BveI ACCTGC 2 cut(s) 364, 801
CaiI CAGNNNCTG 1 cut(s) 379
CciI TCATGA 1 cut(s) 81
Cfr13I GGNCC 3 cut(s) 92, 537, 679
ClaI ATCGAT 1 cut(s) 274
CseI GACGC 1 cut(s) 383
CsiI ACCWGGT 1 cut(s) 133
Csp6I GTAC 2 cut(s) 21, 224
CviAII CATG 7 cut(s) 82, 242, 369, 391, 445, 481, 641
CviQI GTAC 2 cut(s) 21, 224
EaeI YGGCCR 1 cut(s) 190
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco130I CCWWGG 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 92, 537
Eco57I CTGAAG 1 cut(s) 401
Eco72I CACGTG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 43, 133
EcoT14I CCWWGG 1 cut(s) 728
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 7 cut(s) 85, 245, 372, 394, 448, 484, 644
FaqI GGGAC 1 cut(s) 609
FatI CATG 7 cut(s) 81, 241, 368, 390, 444, 480, 640
FauI CCCGC 1 cut(s) 326
FblI GTMKAC 2 cut(s) 247, 459
Fnu4HI GCNGC 2 cut(s) 664, 721
FokI GGATG 3 cut(s) 209, 518, 716
Fsp4HI GCNGC 2 cut(s) 664, 721
FspBI CTAG 5 cut(s) 236, 567, 618, 729, 771
GluI GCNGC 2 cut(s) 664, 721
GsuI CTGGAG 2 cut(s) 66, 423
HaeIII GGCC 2 cut(s) 192, 681
HapII CCGG 2 cut(s) 193, 701
HgaI GACGC 1 cut(s) 383
Hin1II CATG 7 cut(s) 85, 245, 372, 394, 448, 484, 644
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 832
HinfI GANTC 6 cut(s) 16, 37, 276, 509, 563, 599
HpaII CCGG 2 cut(s) 193, 701
HphI GGTGA 3 cut(s) 281, 690, 732
Hpy166II GTNNAC 4 cut(s) 103, 248, 460, 638
Hpy188I TCNGA 3 cut(s) 328, 381, 514
Hpy8I GTNNAC 4 cut(s) 103, 248, 460, 638
HpyAV CCTTC 3 cut(s) 376, 753, 759
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 3 cut(s) 30, 166, 250
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 663, 669, 678
HpySE526I ACGT 3 cut(s) 30, 166, 250
Hsp92II CATG 7 cut(s) 85, 245, 372, 394, 448, 484, 644
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 675
LweI GCATC 2 cut(s) 160, 169
MabI ACCWGGT 1 cut(s) 133
MaeI CTAG 5 cut(s) 236, 567, 618, 729, 771
MaeII ACGT 3 cut(s) 30, 166, 250
MaeIII GTNAC 3 cut(s) 284, 343, 431
MbiI CCGCTC 1 cut(s) 723
MboII GAAGA 3 cut(s) 83, 170, 797
MflI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
MluCI AATT 4 cut(s) 66, 469, 500, 515
MlyI GAGTC 2 cut(s) 25, 593
MnlI CCTC 3 cut(s) 132, 547, 748
MseI TTAA 1 cut(s) 114
MspCI CTTAAG 1 cut(s) 113
MspI CCGG 2 cut(s) 193, 701
MspR9I CCNGG 3 cut(s) 45, 135, 194
MvaI CCWGG 2 cut(s) 45, 135
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 4 cut(s) 179, 663, 669, 678
NciI CCSGG 1 cut(s) 194
NlaIII CATG 7 cut(s) 85, 245, 372, 394, 448, 484, 644
NlaIV GGNNCC 1 cut(s) 680
NmuCI GTSAC 2 cut(s) 343, 431
NspI RCATGY 2 cut(s) 394, 644
PagI TCATGA 1 cut(s) 81
PciI ACATGT 1 cut(s) 640
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PfeI GAWTC 4 cut(s) 37, 276, 509, 563
Pfl23II CGTACG 1 cut(s) 223
PkrI GCNGC 2 cut(s) 665, 722
Ple19I CGATCG 1 cut(s) 14
PleI GAGTC 2 cut(s) 24, 593
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 2 cut(s) 24, 593
Ppu21I YACGTR 2 cut(s) 31, 167
PscI ACATGT 1 cut(s) 640
Psp6I CCWGG 2 cut(s) 43, 133
PspCI CACGTG 1 cut(s) 167
PspGI CCWGG 2 cut(s) 43, 133
PspLI CGTACG 1 cut(s) 223
PspN4I GGNNCC 1 cut(s) 680
PspPI GGNCC 3 cut(s) 92, 537, 679
PstNI CAGNNNCTG 1 cut(s) 379
PsuI RGATCY 7 cut(s) 117, 160, 376, 755, 767, 773, 824
PvuI CGATCG 1 cut(s) 14
RsaI GTAC 2 cut(s) 22, 225
RsaNI GTAC 2 cut(s) 21, 224
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 2 cut(s) 664, 721
Sau96I GGNCC 3 cut(s) 92, 537, 679
SchI GAGTC 2 cut(s) 25, 593
ScrFI CCNGG 3 cut(s) 45, 135, 194
SexAI ACCWGGT 1 cut(s) 133
SfaNI GCATC 2 cut(s) 160, 169
SinI GGWCC 2 cut(s) 92, 537
SmlI CTYRAG 2 cut(s) 113, 601
SmoI CTYRAG 2 cut(s) 113, 601
Sse9I AATT 4 cut(s) 66, 469, 500, 515
SsiI CCGC 3 cut(s) 319, 436, 721
SspI AATATT 1 cut(s) 713
SspMI CTAG 5 cut(s) 236, 567, 618, 729, 771
StyD4I CCNGG 3 cut(s) 43, 133, 192
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 3 cut(s) 33, 169, 253
TaqI TCGA 3 cut(s) 14, 274, 552
TaqII GACCGA 3 cut(s) 109, 525, 750
TasI AATT 4 cut(s) 66, 469, 500, 515
TauI GCSGC 1 cut(s) 723
TfiI GAWTC 4 cut(s) 37, 276, 509, 563
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 352
TseFI GTSAC 2 cut(s) 343, 431
TseI GCWGC 1 cut(s) 663
Tsp45I GTSAC 2 cut(s) 343, 431
TspDTI ATGAA 5 cut(s) 70, 98, 249, 357, 497
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 1 cut(s) 352
Vha464I CTTAAG 1 cut(s) 113
VpaK11BI GGWCC 2 cut(s) 92, 537
XapI RAATTY 1 cut(s) 515
XbaI TCTAGA 2 cut(s) 617, 770
XceI RCATGY 2 cut(s) 394, 644
XmaJI CCTAGG 1 cut(s) 728
XmiI GTMKAC 2 cut(s) 247, 459
XspI CTAG 5 cut(s) 236, 567, 618, 729, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.