FvH4_6g11980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014486
Physical Location & Seq
Forward (+)
7197193 .. 7198701
1509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11980.t1

Sequence Viewer

Length: 777 bp
ATGATTGCCCTCAAACACATTCAAACCTCTTTCACCGCCACCAGACATACCATTTTACAGTCGGGAAGATTTCCCAGCACAAAGAACTCCATCTTGCGCTTCAGCAAGTCCAATGATTCCGATTCCGAACCAGAGACTCCTTCGCCTGGAGGAGATACTCAAAAGCAAGAGATGCTGGTGAGGATAGCAATGCTTCAAGCTCAGAAAGTCCGGCTTGCAGAATACTTGGATGAGAGATCAGAATATCTTACTAAATTCGGAGAAGATGCTAATGCGGAGTTTGACAAGATTGGAGAAGATGCCCTCAAAGGACTGGATGAAGCCAGTGCTAGGATAATGGAGAATATGGACAGCCGCATGCAGGCGTTTGAGGAATCTACAGGTGTGAACATATCAGAGATTGAAGAAAATGAAAACGAGTTAGCAGCATTCGAAGATCAGATTGCAAAAGACCGAAATGAAGGGTTATTTTTCAAGAATCTGACGCAGGGAAAACCAAAAGAAAAGGTAAACGCTACAGAGGAAATAAAGAAGATCAAGGAGCTTACAAAAAAAAGTGCAGGATCAGAAACCAGGAGGAATATTTACCTTGTATTAATTGGCCTGCTACTCATAGAAATCGTTGACTCTTTCATCACTTCAACACCCGATTGGAGAAAAGTTGCAATTCTTGGGGTAATTTTAGTGGGTTTGGTCACTCAGTTCATCTATGAGCAGAAAATGCTATCAGAAAAAGAAAGAGCAGAAGAGAAGAAGACAGAGGAAGAAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.34

Weight (kDa)

5.1

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 36, 275, 355
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 146, 330, 361
AgsI TTSAA 5 cut(s) 23, 197, 404, 475, 642
AjnI CCWGG 2 cut(s) 145, 572
AluBI AGCT 2 cut(s) 200, 544
AluI AGCT 2 cut(s) 200, 544
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 571
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 254
AseI ATTAAT 1 cut(s) 596
AspLEI GCGC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 25, 190
AsuII TTCGAA 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 761
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 2 cut(s) 147, 574
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 2 cut(s) 378, 516
BisI GCNGC 2 cut(s) 355, 426
BlsI GCNGC 2 cut(s) 356, 427
Bme1390I CCNGG 2 cut(s) 147, 574
BmrFI CCNGG 2 cut(s) 147, 574
BmsI GCATC 3 cut(s) 162, 256, 289
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 432
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 330, 361
Bse1I ACTGG 2 cut(s) 318, 324
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 2 cut(s) 147, 574
BseGI GGATG 2 cut(s) 235, 322
BseLI CCNNNNNNNGG 3 cut(s) 146, 330, 361
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 215, 713
BseNI ACTGG 2 cut(s) 318, 324
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 437
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 211
BslI CCNNNNNNNGG 3 cut(s) 146, 330, 361
BsmAI GTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 1 cut(s) 603
Bsp119I TTCGAA 1 cut(s) 432
Bsp143I GATC 4 cut(s) 236, 436, 534, 563
BspACI CCGC 3 cut(s) 36, 275, 355
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 2 cut(s) 214, 712
BspPI GGATC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 318, 324
BssMI GATC 4 cut(s) 236, 436, 534, 563
Bst2UI CCWGG 2 cut(s) 147, 574
Bst4CI ACNGT 1 cut(s) 60
Bst6I CTCTTC 1 cut(s) 741
BstAPI GCANNNNNTGC 2 cut(s) 172, 721
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 4 cut(s) 216, 359, 363, 605
BstDEI CTNAG 2 cut(s) 201, 699
BstF5I GGATG 2 cut(s) 235, 322
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 4 cut(s) 239, 439, 537, 566
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 4 cut(s) 236, 436, 534, 563
BstMWI GCNNNNNNNGC 2 cut(s) 172, 721
BstNI CCWGG 2 cut(s) 147, 574
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 145, 572
BstSFI CTRYAG 2 cut(s) 378, 516
BstV1I GCAGC 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 761
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 2 cut(s) 235, 322
BtsIMutI CAGTG 1 cut(s) 331
Cac8I GCNNGC 4 cut(s) 216, 359, 363, 605
CfoI GCGC 1 cut(s) 99
CseI GACGC 1 cut(s) 493
CviAII CATG 1 cut(s) 358
CviJI RGCY 6 cut(s) 200, 214, 323, 354, 544, 603
CviKI_1 RGCY 6 cut(s) 200, 214, 323, 354, 544, 603
DdeI CTNAG 2 cut(s) 201, 699
DpnI GATC 4 cut(s) 238, 438, 536, 565
DpnII GATC 4 cut(s) 236, 436, 534, 563
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 145, 572
FaeI CATG 1 cut(s) 361
FaiI YATR 6 cut(s) 48, 347, 359, 392, 614, 711
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 355, 426
FokI GGATG 2 cut(s) 242, 329
Fsp4HI GCNGC 2 cut(s) 355, 426
FspBI CTAG 1 cut(s) 330
GlaI GCGC 1 cut(s) 98
GluI GCNGC 2 cut(s) 355, 426
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 211
HgaI GACGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 6 cut(s) 116, 122, 136, 374, 478, 626
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 25, 190
Hpy166II GTNNAC 3 cut(s) 388, 511, 625
Hpy188III TCNNGA 2 cut(s) 63, 475
Hpy8I GTNNAC 3 cut(s) 388, 511, 625
HpyAV CCTTC 3 cut(s) 150, 455, 765
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 5 cut(s) 218, 361, 446, 560, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 721
HpyF3I CTNAG 2 cut(s) 201, 699
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 4 cut(s) 236, 436, 534, 563
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 3 cut(s) 162, 256, 289
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 694
MalI GATC 4 cut(s) 238, 438, 536, 565
MboI GATC 4 cut(s) 236, 436, 534, 563
MluCI AATT 4 cut(s) 254, 597, 666, 678
MlyI GAGTC 2 cut(s) 130, 620
MnlI CCTC 9 cut(s) 20, 37, 143, 174, 314, 364, 514, 570, 754
MseI TTAA 1 cut(s) 596
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 2 cut(s) 147, 574
Mva1269I GAATGC 1 cut(s) 428
MvaI CCWGG 2 cut(s) 147, 574
MwoI GCNNNNNNNGC 2 cut(s) 172, 721
NdeII GATC 4 cut(s) 236, 436, 534, 563
NlaIII CATG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 694
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 432
PaeI GCATGC 1 cut(s) 361
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 4 cut(s) 116, 122, 374, 478
PkrI GCNGC 2 cut(s) 356, 427
PleI GAGTC 2 cut(s) 130, 620
PpsI GAGTC 2 cut(s) 130, 620
PshBI ATTAAT 1 cut(s) 596
Psp6I CCWGG 2 cut(s) 145, 572
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 2 cut(s) 145, 572
SaqAI TTAA 1 cut(s) 596
SatI GCNGC 2 cut(s) 355, 426
Sau3AI GATC 4 cut(s) 236, 436, 534, 563
SchI GAGTC 2 cut(s) 130, 620
ScrFI CCNGG 2 cut(s) 147, 574
SetI ASST 7 cut(s) 29, 202, 385, 510, 546, 591, 776
SfaNI GCATC 3 cut(s) 162, 256, 289
SfcI CTRYAG 2 cut(s) 378, 516
SfuI TTCGAA 1 cut(s) 432
SphI GCATGC 1 cut(s) 361
Sse9I AATT 4 cut(s) 254, 597, 666, 678
SsiI CCGC 3 cut(s) 36, 275, 355
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 2 cut(s) 145, 572
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 1 cut(s) 432
TaqII GACCGA 1 cut(s) 468
TasI AATT 4 cut(s) 254, 597, 666, 678
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 4 cut(s) 116, 122, 374, 478
Tru1I TTAA 1 cut(s) 596
Tru9I TTAA 1 cut(s) 596
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 5 cut(s) 333, 426, 474, 622, 694
TspRI CASTG 1 cut(s) 331
VspI ATTAAT 1 cut(s) 596
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 361
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.