Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014486

Physical Location & Seq

Genomic Coordinates Reverse (-)

17587964 .. 17589369

Gene Structure 1406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g15240.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGATTGGCCTCAAGCTCATTCAAACCTCCTTCACCCCCACCAAACATGCCAATTTACACACAGGACGATTGTCCAACGCCAAGAATTCCATCTTGCGATTCAGCAAGTCCAATGATTCTGATTCGGAGTCAGATGCTTCCCCTCCCGAAGGCGACACTCACAAGCAAGAGCTGCTGGTGAGGATAACAATGCTTCAAGCTCAGAAGGTCCGTCTTGCCGATTACTTGGATGAAAGGTCAGAGTATCTTACCAAATTTGGAGAAGAGGCAAACGCCGAGTTTGACAAGATTGGAGAAGATGCTCTCAAAGACCTGGATGAAGCCAGCGACAGGATATTGGAGAATATAAACAGCCGCATGCAGGCCCTTGAGGAATCTGCAGGAGTAAACATTAAGGAGATGGAGAAAAACGAAAACGAGTTAGAAGCATTCGAAGGGCAAGCTGAAAAAAAAAAAAAAAAAAAAAAAGATGCTACCGAGGAAATAAATAAAAACAAGAAGCTTACCAAAAAAAGTGCAGGATCAGAAACCAGGAGGAACATTTACCTTGCTCTAATTGGTCTGCTACTCGTACAACTTGTCGACTCTTTCATCACTTCAACACCTGATTGGAGAAAAGTTGCATTTCTTGGGGCAATTTTTGTGGGTTTGGTTTCTCAGGTCATCTATGAGTTGACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.42

Weight (kDa)

5.61

Isoelectric Point (pI)

40.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014486)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09050
fragaria_vesca	FvH4_6g11980
malus_domestica	MD04G1147400.v1.1
pyrus_communis	pycom04g13300 pycom12g15240
rosa_chinensis	RchiOBHm_Chr3g0463811
rosa_laevigata	RLG00000024755
rosa_multiflora	Rmu_sc0004796.1_g000012
rosa_roxburghii	Rroxscaffold_6G00416280
rosa_rugosa	Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha	Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana	Rw3G010570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	582
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	1 cut(s)	529
AcsI	RAATTY	2 cut(s)	85, 254
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	3 cut(s)	149, 330, 361
AgsI	TTSAA	3 cut(s)	23, 197, 600
AjnI	CCWGG	2 cut(s)	312, 530
AluBI	AGCT	5 cut(s)	16, 172, 200, 443, 502
AluI	AGCT	5 cut(s)	16, 172, 200, 443, 502
AlwI	GGATC	1 cut(s)	529
AoxI	GGCC	2 cut(s)	7, 363
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	2 cut(s)	85, 254
AspS9I	GGNCC	2 cut(s)	208, 364
AsuHPI	GGTGA	2 cut(s)	25, 190
AsuII	TTCGAA	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	208
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	2 cut(s)	98, 394
BciT130I	CCWGG	2 cut(s)	314, 532
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	2 cut(s)	173, 355
BlsI	GCNGC	2 cut(s)	174, 356
Bme1390I	CCNGG	2 cut(s)	314, 532
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	208, 364
BmrFI	CCNGG	2 cut(s)	314, 532
BmsI	GCATC	3 cut(s)	124, 289, 460
BoxI	GACNNNNGTC	1 cut(s)	70
Bpu14I	TTCGAA	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 330, 361
BseBI	CCWGG	2 cut(s)	314, 532
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	2 cut(s)	235, 322
BseLI	CCNNNNNNNGG	3 cut(s)	149, 330, 361
BseMII	CTCAG	2 cut(s)	215, 671
BseXI	GCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	9, 365
BslI	CCNNNNNNNGG	3 cut(s)	149, 330, 361
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	9, 365
Bsp119I	TTCGAA	1 cut(s)	432
Bsp143I	GATC	1 cut(s)	521
BspACI	CCGC	1 cut(s)	355
BspANI	GGCC	2 cut(s)	9, 365
BspCNI	CTCAG	2 cut(s)	214, 670
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	529
BspT104I	TTCGAA	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	1 cut(s)	521
Bst2UI	CCWGG	2 cut(s)	314, 532
Bst6I	CTCTTC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstBI	TTCGAA	1 cut(s)	432
BstC8I	GCNNGC	4 cut(s)	325, 359, 363, 441
BstDEI	CTNAG	2 cut(s)	201, 657
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	235, 322
BstKTI	GATC	1 cut(s)	524
BstMBI	GATC	1 cut(s)	521
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	314, 532
BstNSI	RCATGY	2 cut(s)	50, 361
BstPAI	GACNNNNGTC	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	312, 530
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	9, 365
BtsCI	GGATG	2 cut(s)	235, 322
Cac8I	GCNNGC	4 cut(s)	325, 359, 363, 441
Cfr13I	GGNCC	2 cut(s)	208, 364
Csp6I	GTAC	1 cut(s)	572
CspCI	CAANNNNNGTGG	2 cut(s)	624, 659
CviAII	CATG	2 cut(s)	47, 358
CviJI	RGCY	9 cut(s)	9, 16, 172, 200, 323, 354, 365, 443, 502
CviKI_1	RGCY	9 cut(s)	9, 16, 172, 200, 323, 354, 365, 443, 502
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	2 cut(s)	201, 657
DpnI	GATC	1 cut(s)	523
DpnII	GATC	1 cut(s)	521
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	312, 530
FaeI	CATG	2 cut(s)	50, 361
FaiI	YATR	4 cut(s)	48, 347, 359, 669
FatI	CATG	2 cut(s)	46, 357
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	2 cut(s)	173, 355
FokI	GGATG	2 cut(s)	242, 329
Fsp4HI	GCNGC	2 cut(s)	173, 355
GluI	GCNGC	2 cut(s)	173, 355
HaeIII	GGCC	2 cut(s)	9, 365
Hin1II	CATG	2 cut(s)	50, 361
HincII	GTYRAC	2 cut(s)	583, 675
HindII	GTYRAC	2 cut(s)	583, 675
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	6 cut(s)	99, 116, 122, 128, 374, 584
HphI	GGTGA	2 cut(s)	25, 190
Hpy166II	GTNNAC	3 cut(s)	388, 583, 675
Hpy188I	TCNGA	6 cut(s)	121, 127, 133, 204, 241, 526
Hpy188III	TCNNGA	1 cut(s)	146
Hpy8I	GTNNAC	3 cut(s)	388, 583, 675
HpyAV	CCTTC	4 cut(s)	40, 143, 199, 428
HpyCH4V	TGCA	4 cut(s)	361, 380, 518, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	2 cut(s)	201, 657
Hsp92II	CATG	2 cut(s)	50, 361
Kzo9I	GATC	1 cut(s)	521
Lsp1109I	GCAGC	1 cut(s)	159
LweI	GCATC	3 cut(s)	124, 289, 460
MalI	GATC	1 cut(s)	523
MboI	GATC	1 cut(s)	521
MboII	GAAGA	2 cut(s)	275, 308
MluCI	AATT	5 cut(s)	52, 85, 254, 555, 636
MlyI	GAGTC	2 cut(s)	137, 578
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	8 cut(s)	20, 37, 153, 174, 259, 364, 472, 528
MseI	TTAA	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	314, 532
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	2 cut(s)	314, 532
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	521
NlaIII	CATG	2 cut(s)	50, 361
NmeAIII	GCCGAG	1 cut(s)	301
NspI	RCATGY	2 cut(s)	50, 361
NspV	TTCGAA	1 cut(s)	432
PaeI	GCATGC	1 cut(s)	361
PctI	GAATGC	1 cut(s)	428
PfeI	GAWTC	4 cut(s)	99, 116, 122, 374
PkrI	GCNGC	2 cut(s)	174, 356
PleI	GAGTC	2 cut(s)	136, 578
PpsI	GAGTC	2 cut(s)	136, 578
PshAI	GACNNNNGTC	1 cut(s)	70
Psp6I	CCWGG	2 cut(s)	312, 530
PspGI	CCWGG	2 cut(s)	312, 530
PspPI	GGNCC	2 cut(s)	208, 364
PstI	CTGCAG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SalI	GTCGAC	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	173, 355
Sau3AI	GATC	1 cut(s)	521
Sau96I	GGNCC	2 cut(s)	208, 364
SchI	GAGTC	2 cut(s)	137, 578
ScrFI	CCNGG	2 cut(s)	314, 532
SfaNI	GCATC	3 cut(s)	124, 289, 460
SfcI	CTRYAG	1 cut(s)	378
SfuI	TTCGAA	1 cut(s)	432
SinI	GGWCC	1 cut(s)	208
SmlI	CTYRAG	2 cut(s)	11, 368
SmoI	CTYRAG	2 cut(s)	11, 368
SphI	GCATGC	1 cut(s)	361
Sse9I	AATT	5 cut(s)	52, 85, 254, 555, 636
SsiI	CCGC	1 cut(s)	355
StyD4I	CCNGG	2 cut(s)	312, 530
TaqI	TCGA	2 cut(s)	432, 582
TasI	AATT	5 cut(s)	52, 85, 254, 555, 636
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	4 cut(s)	99, 116, 122, 374
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseI	GCWGC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	246, 333, 580
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	208
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	85, 254
XceI	RCATGY	2 cut(s)	50, 361
XmiI	GTMKAC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.