Rh3AG124900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014486
Physical Location & Seq
Forward (+)
10776603 .. 10778045
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG124900.1

Sequence Viewer

Length: 777 bp
ATGATTGCCCTCAAACACATTCAAATCTCTTTCAACGCCACCAGACATACCATTTTACAGCCGGGAAGATTTCCCAGCACAAAGAACTCCATCTTGCGCTTCAGCAAGTCCAATGATTCTGATTCCGAATCAGAGACTCCTTCGCCTGAGGGAGATACTCGCAAGCAAGAGCTGCTGGTGAGGATAGCAATGCTTCAAGCTCAGAAAGTCCGGCTTGCGGATTACTTAGATGAAAGATCAGAATATCTTACTAAATTCGGAGAAGATGCCACTGCGGAGTTTGACAAGATTGGAGAAGATGCCCTCAAAGGACTGGATGAAGCCAGTGCTCGGATAATGGAGAATATGGACAGCCGCATGCAGGCGTTTGAGGAATCTACAGGAGTGAACATATCGGAGATCGAAGAAAATGAAAATGAGTTAGCAGCATTCGAAGATCAGATTGAAAAAGACCGAAATGAAGGGCTATTTTTCAAGAATCTGACGCAGGGGAAACCCATAAAAAAGTTAGACGCTACGGAGGAAATAAAGAAGATCAAGGAGCTTACTAAAAAAAGTGCAGGATCAGAAATCAGGAGGAATATTTACCTTGTATTGATTGGCCTGCTACTCATAGAAATTGTTGACTCCTTCATCACTTCAACACCCGATTGGAGAAAAGTTGCATTTCTCGGGGTAATTTTAGTGGGTTTGGTTACTCAGTTCATCTATGAGCAGAAAATGCTATCAGAAAAAGAAATAGCAGAAGAGAAGAAGACAGAGGAAGAAAGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

258

Amino Acids

29.48

Weight (kDa)

4.99

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014486)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09050
fragaria_vesca FvH4_6g11980
malus_domestica MD04G1147400.v1.1
pyrus_communis pycom04g13300 pycom12g15240
rosa_chinensis RchiOBHm_Chr3g0463811
rosa_laevigata RLG00000024755
rosa_multiflora Rmu_sc0004796.1_g000012
rosa_roxburghii Rroxscaffold_6G00416280
rosa_rugosa Rorug03G0067800 Rorug03G0067900 Rorug03G0067900
rosa_samantha Rh3AG124900 Rh3BG129400 Rh3CG131800 Rh3DG130300
rosa_wichuraiana Rw3G010570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 218, 275, 355
AclWI GGATC 1 cut(s) 571
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 85
AfiI CCNNNNNNNGG 3 cut(s) 217, 330, 361
AgsI TTSAA 6 cut(s) 23, 34, 197, 446, 475, 642
AluBI AGCT 3 cut(s) 172, 200, 544
AluI AGCT 3 cut(s) 172, 200, 544
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 1 cut(s) 571
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 2 cut(s) 172, 425
ApoI RAATTY 1 cut(s) 254
AspLEI GCGC 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 190
AsuII TTCGAA 1 cut(s) 432
AvaI CYCGRG 1 cut(s) 671
AxyI CCTNAGG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 2 cut(s) 159, 437
BccI CCATC 1 cut(s) 98
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 3 cut(s) 173, 355, 426
BlsI GCNGC 3 cut(s) 174, 356, 427
Bme1390I CCNGG 1 cut(s) 63
BmeT110I CYCGRG 1 cut(s) 671
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 2 cut(s) 256, 289
BpiI GAAGAC 1 cut(s) 761
Bpu14I TTCGAA 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 3 cut(s) 217, 330, 361
Bse1I ACTGG 2 cut(s) 318, 324
Bse21I CCTNAGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 195
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 3 cut(s) 217, 330, 361
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 3 cut(s) 138, 215, 713
BseNI ACTGG 2 cut(s) 318, 324
BseXI GCAGC 2 cut(s) 159, 437
BseYI CCCAGC 1 cut(s) 74
BsgI GTGCAG 1 cut(s) 579
BshFI GGCC 1 cut(s) 603
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 2 cut(s) 62, 211
BslI CCNNNNNNNGG 3 cut(s) 217, 330, 361
BsmAI GTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 428
BsnI GGCC 1 cut(s) 603
BsoBI CYCGRG 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 331
Bsp143I GATC 5 cut(s) 236, 399, 436, 534, 563
BspACI CCGC 3 cut(s) 218, 275, 355
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 3 cut(s) 139, 214, 712
BspPI GGATC 1 cut(s) 571
BspT104I TTCGAA 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 195
BsrI ACTGG 2 cut(s) 318, 324
BssMI GATC 5 cut(s) 236, 399, 436, 534, 563
Bst6I CTCTTC 1 cut(s) 741
BstAPI GCANNNNNTGC 2 cut(s) 172, 721
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 5 cut(s) 164, 216, 359, 363, 605
BstDEI CTNAG 4 cut(s) 147, 201, 226, 699
BstF5I GGATG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 99
BstKTI GATC 5 cut(s) 239, 402, 439, 537, 566
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 5 cut(s) 236, 399, 436, 534, 563
BstMWI GCNNNNNNNGC 2 cut(s) 172, 721
BstNSI RCATGY 1 cut(s) 361
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 1 cut(s) 378
BstV1I GCAGC 2 cut(s) 159, 437
BstV2I GAAGAC 1 cut(s) 761
Bsu36I CCTNAGG 1 cut(s) 147
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 1 cut(s) 322
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 270, 331
Cac8I GCNNGC 5 cut(s) 164, 216, 359, 363, 605
CfoI GCGC 1 cut(s) 99
CseI GACGC 2 cut(s) 493, 521
CviAII CATG 1 cut(s) 358
CviJI RGCY 9 cut(s) 61, 172, 200, 214, 323, 354, 466, 544, 603
CviKI_1 RGCY 9 cut(s) 61, 172, 200, 214, 323, 354, 466, 544, 603
DdeI CTNAG 4 cut(s) 147, 201, 226, 699
DpnI GATC 5 cut(s) 238, 401, 438, 536, 565
DpnII GATC 5 cut(s) 236, 399, 436, 534, 563
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 147
Eco88I CYCGRG 1 cut(s) 671
FaeI CATG 1 cut(s) 361
FaiI YATR 7 cut(s) 48, 347, 359, 392, 500, 614, 711
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 1 cut(s) 357
Fnu4HI GCNGC 3 cut(s) 173, 355, 426
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 3 cut(s) 173, 355, 426
GlaI GCGC 1 cut(s) 98
GluI GCNGC 3 cut(s) 173, 355, 426
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 603
HapII CCGG 2 cut(s) 62, 211
HgaI GACGC 2 cut(s) 493, 521
HhaI GCGC 1 cut(s) 99
Hin1II CATG 1 cut(s) 361
Hin6I GCGC 1 cut(s) 97
HinP1I GCGC 1 cut(s) 97
HincII GTYRAC 1 cut(s) 625
HindII GTYRAC 1 cut(s) 625
HinfI GANTC 7 cut(s) 116, 122, 128, 136, 374, 478, 626
HpaII CCGG 2 cut(s) 62, 211
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 2 cut(s) 388, 625
Hpy188III TCNNGA 2 cut(s) 475, 574
Hpy8I GTNNAC 2 cut(s) 388, 625
HpyAV CCTTC 4 cut(s) 150, 455, 640, 765
HpyCH4V TGCA 3 cut(s) 361, 560, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 721
HpyF3I CTNAG 4 cut(s) 147, 201, 226, 699
Hsp92II CATG 1 cut(s) 361
HspAI GCGC 1 cut(s) 97
Kzo9I GATC 5 cut(s) 236, 399, 436, 534, 563
LmnI GCTCC 1 cut(s) 541
Lsp1109I GCAGC 2 cut(s) 159, 437
LweI GCATC 2 cut(s) 256, 289
MaeIII GTNAC 1 cut(s) 694
MalI GATC 5 cut(s) 238, 401, 438, 536, 565
MboI GATC 5 cut(s) 236, 399, 436, 534, 563
MhlI GDGCHC 1 cut(s) 331
MluCI AATT 3 cut(s) 254, 618, 678
MlyI GAGTC 2 cut(s) 130, 620
MnlI CCTC 8 cut(s) 20, 142, 174, 314, 364, 514, 570, 754
MspI CCGG 2 cut(s) 62, 211
MspR9I CCNGG 1 cut(s) 63
Mva1269I GAATGC 1 cut(s) 428
MwoI GCNNNNNNNGC 2 cut(s) 172, 721
NciI CCSGG 1 cut(s) 63
NdeII GATC 5 cut(s) 236, 399, 436, 534, 563
NlaIII CATG 1 cut(s) 361
NspI RCATGY 1 cut(s) 361
NspV TTCGAA 1 cut(s) 432
PaeI GCATGC 1 cut(s) 361
PctI GAATGC 1 cut(s) 428
PfeI GAWTC 5 cut(s) 116, 122, 128, 374, 478
PkrI GCNGC 3 cut(s) 174, 356, 427
PleI GAGTC 2 cut(s) 130, 620
PpsI GAGTC 2 cut(s) 130, 620
PspFI CCCAGC 1 cut(s) 74
SatI GCNGC 3 cut(s) 173, 355, 426
Sau3AI GATC 5 cut(s) 236, 399, 436, 534, 563
SchI GAGTC 2 cut(s) 130, 620
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 331
SetI ASST 5 cut(s) 174, 202, 546, 591, 776
SfaNI GCATC 2 cut(s) 256, 289
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 432
SphI GCATGC 1 cut(s) 361
Sse9I AATT 3 cut(s) 254, 618, 678
SsiI CCGC 3 cut(s) 218, 275, 355
SspI AATATT 1 cut(s) 583
StyD4I CCNGG 1 cut(s) 61
TaqI TCGA 2 cut(s) 402, 432
TaqII GACCGA 1 cut(s) 468
TasI AATT 3 cut(s) 254, 618, 678
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 5 cut(s) 116, 122, 128, 374, 478
TscAI CASTG 2 cut(s) 277, 331
TseI GCWGC 2 cut(s) 172, 425
TspDTI ATGAA 6 cut(s) 246, 333, 426, 474, 622, 694
TspGWI ACGGA 1 cut(s) 533
TspRI CASTG 2 cut(s) 277, 331
XapI RAATTY 1 cut(s) 254
XceI RCATGY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.