Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013532

Physical Location & Seq

Genomic Coordinates Reverse (-)

2765812 .. 2768499

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGGTCGTGTTCCCAAAGTCGCTGTCACCCAAACACGTCCTTAAGCTCTTGAAATCGGAGAAGAACCCGCGTGCGGCTTTTGCTCTATTCGATTCGGCGACTCGCCATCCAGGCTATGCACACTCCGCCGTCGTTTACCACCATATCCTCCGACGTCTCTCGGAGACGCGGATGGTTAATCATGTAAGTCGAATCGTCGAGCTTATTAGGTCACAAGAATGTAAATGCGACGAAGATGTCGCTTTATCGGTTATCAAAACCTACGGAAAGAACTCCATGCCTGATCAAGCTCTAGATGTTTTCAAACGAATGCGAGAGATTTTCGGGTGCGAGCCTGCGATTCGATCTTATAACACTCTACTTAATGCGTTCGTGGAGGCGAAACAATGGGTTAAAGTCGAGTCCTTGTTCGCCTACTTCGAGACTGCTGGAGTGGCGCCAAATCTGCAGACGTATAATGTTTTGATTAAAATGTCTTGTAAGAAGAAGGAGTTCGAGAAAGCGAGAGGGTTTCTAGATTGGATGTGGAAAGAGGGGTTTAAGCCTGATGTGTTTAGTTACAGCACTGTGATCAACGATCTTGCTAAAGCTGGGAAATTGGATGATGCACTGGAACTGTTCGATGAAATGTCTGAAAGAGGAGTGGCACCTGATGTCACGTGTTATAATATCTTAATTGATGGGTTTCTTAAGGAAAAAGATCACAAGACGGCTATGGAACTGTGGGACAGACTGTTGGAGGACTCTTCTGTTTATCCGAATGTTAAGACTCACAACATCATGATTAGTGGTTTGAGCAAATGCGGAAGAGTAGATGATTGTTTAAAGATATGGGAGAGAATGAAACAAAATGAGCGTGAAAAAGATTTATATACATATAGCAGTTTGATACATGGGCTGTGCGATGCAGGTAATGTTGATAAGGCTGAAAGTGTGTTTAATGAGTTGGACGAAAGGAAAGCCTCGATTGATGTGGTTACATACAATACTATGCTTGGTGGGTTTTGCCGTTGTGGGAAAATTAAGGAGAGTTTGGAGTTGTGGAGAATCATGGAGCACAAGAATTCAGTTAACATAGTGAGTTATAACATTTTGATTAAAGGGTTGTTGGAGAATGGGAAGATCGATGAAGCAACAATGATTTGGAGGCTTATGCCTGCCAAGGGCTATGCAGCTGACAAAACTACTTACGGTATTTTTATTCACGGGTTATGTGTGAATGGTTATGTGAATAAAGCCTTGGGGGTGATGCAAGAGGTGGAGAGCAGTGGTGGGCATCTGGATGTTTATGCATATGCGTCAATTATAGACTGTTTGTGCAAAAAGAAAAGATTAGAAGAAGCGTCAAATTTGGTAAAAGAGATGAGTAAGCATGGCGTGGAGCTAAATTCTCATGTCTGTAATGCATTAATAGGTGGTTTAATCCGAGACTCAAGACTTGGTGAGGCTTCCTTTTTTCTGAGAGAGATGGGGAAGAACGGTTGTCGCCCGACTGTTGTATCCTACAACATTCTTATTTGCGGTTTGTGTAAAGCAGGGAAATTTGGTGAAGCATCTGCTTTTGTGAAAGAAATGCTTGAAAACGGATGGAAACCAGATCTGAAAACTTATAGTATACTCTTATGTGGTCTTTGCCGCGACAGGAAGATCGATTTGGCCCTTGAATTGTGGCACCAATTTCTTCAATCGGGACTCGAAACCGATGTGATGATGCATAACATACTAATTCATGGTCTGTGCTCTGTTGGGAAACTTGATGATGCAATGACTGTCATGGCAAATATGGAGCATCGGAATTGCACTGCAAATCTTGTAACCTACAACACCTTGATGGAAGGATTCTTCAAAGTTGGAGATAGCAACAGAGCCACAGTGATTTGGGGTTACATGTACAAGATGGGGTTGCAACCTGATATTATATCCTACAATACTATAATGAAAGGGTTGTGTATGTGCCGCGGAGTGTCGTATGCTATGGAATTCTTTGATGATGCTAGAAACCATGGCATTTTTCCAACTGTTTACACCTGGAACATACTTGTTCGAGCTGTCGTGAATCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

687

Amino Acids

77.9

Weight (kDa)

7.91

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	21 - 129	2.5e-06	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	80 - 209	3e-07	Fungal tetratrico peptide repeats
PPR_3	PF13812	109 - 159	1.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	113 - 161	1.8e-09	PPR repeat family
PPR_long	PF17177	136 - 225	5.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	147 - 196	8.3e-13	PPR repeat family
PPR_3	PF13812	175 - 227	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	179 - 211	1.7e-11	PPR repeat
PPR	PF01535	185 - 215	1.1e-07	PPR repeat
PPR_2	PF13041	189 - 231	1.5e-12	PPR repeat family
PPR_2	PF13041	217 - 267	8.2e-12	PPR repeat family
PPR_1	PF12854	251 - 282	2.5e-06	PPR repeat
PPR_2	PF13041	253 - 302	1.5e-13	PPR repeat family
PPR	PF01535	257 - 284	1.7e-06	PPR repeat
PPR_3	PF13812	277 - 334	2.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	289 - 315	7.4e-10	PPR repeat
PPR	PF01535	291 - 319	1.1e-06	PPR repeat
PPR_2	PF13041	295 - 337	1.2e-11	PPR repeat family
PPR_1	PF12854	323 - 352	3.6e-09	PPR repeat
PPR_2	PF13041	324 - 355	2e-07	PPR repeat family
PPR	PF01535	326 - 355	4.6e-07	PPR repeat
PPR_2	PF13041	358 - 405	9.4e-13	PPR repeat family
PPR_1	PF12854	424 - 456	2.8e-07	PPR repeat
PPR_2	PF13041	428 - 465	6.6e-08	PPR repeat family
PPR_3	PF13812	451 - 506	1.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	463 - 511	5.4e-12	PPR repeat family
TPR_24	PF23276	488 - 592	4.1e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	493 - 525	3.6e-12	PPR repeat
PPR_2	PF13041	497 - 546	2.8e-17	PPR repeat family
PPR	PF01535	500 - 529	2.3e-07	PPR repeat
PPR_1	PF12854	529 - 558	3.6e-06	PPR repeat
PPR_3	PF13812	561 - 612	4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	564 - 596	9.4e-08	PPR repeat
PPR_2	PF13041	568 - 614	4e-11	PPR repeat family
PPR_3	PF13812	593 - 647	5e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	603 - 650	4.9e-13	PPR repeat family
PPR_1	PF12854	633 - 664	4.4e-06	PPR repeat
PPR_2	PF13041	637 - 684	6.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09060 AT3G09060
fragaria_vesca	FvH4_6g11981
malus_domestica	MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica	Prupe.6G271000_v2.0.a1
pyrus_communis	pycom12g15230
rosa_chinensis	RchiOBHm_Chr3g0463821
rosa_laevigata	RLG00000024754
rosa_multiflora	Rmu_sc0004796.1_g000010
rosa_roxburghii	Rroxscaffold_6G00416270
rosa_rugosa	Rorug03G0068000 Rorug03G0068100
rosa_samantha	Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana	Rw3G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	351, 666, 1086
AasI	GACNNNNNNGTC	1 cut(s)	236
AatII	GACGTC	1 cut(s)	157
Acc36I	ACCTGC	1 cut(s)	899
AccB1I	GGYRCC	3 cut(s)	436, 646, 1671
AccI	GTMKAC	1 cut(s)	1615
AccII	CGCG	4 cut(s)	70, 169, 1638, 1959
AciI	CCGC	9 cut(s)	68, 74, 126, 169, 804, 1521, 1636, 1957, 1959
AcsI	RAATTY	5 cut(s)	1063, 1348, 1387, 1541, 1979
AcvI	CACGTG	1 cut(s)	660
AcyI	GRCGYC	2 cut(s)	154, 437
AfaI	GTAC	1 cut(s)	1892
AfiI	CCNNNNNNNGG	2 cut(s)	73, 1163
AflII	CTTAAG	2 cut(s)	41, 689
AflIII	ACRYGT	3 cut(s)	34, 659, 1887
AgsI	TTSAA	6 cut(s)	52, 304, 1580, 1664, 1685, 1846
AjiI	CACGTC	1 cut(s)	37
AjnI	CCWGG	2 cut(s)	109, 2027
AjuI	GAANNNNNNNTTGG	4 cut(s)	1223, 1255, 1637, 1669
AluBI	AGCT	7 cut(s)	46, 202, 290, 590, 1175, 1384, 2048
AluI	AGCT	7 cut(s)	46, 202, 290, 590, 1175, 1384, 2048
Alw21I	GWGCWC	2 cut(s)	1059, 1742
Alw26I	GTCTC	4 cut(s)	158, 161, 416, 1422
AoxI	GGCC	1 cut(s)	1656
ApeKI	GCWGC	1 cut(s)	1172
ApoI	RAATTY	5 cut(s)	1063, 1348, 1387, 1541, 1979
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AseI	ATTAAT	1 cut(s)	1409
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	1657
AsuHPI	GGTGA	4 cut(s)	18, 1258, 1454, 1559
BaeI	ACNNNNGTAYC	2 cut(s)	1482, 1515
BanI	GGYRCC	3 cut(s)	436, 646, 1671
BbrPI	CACGTG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	1059, 1742
BbvI	GCAGC	1 cut(s)	1184
BccI	CCATC	7 cut(s)	114, 166, 674, 1462, 1581, 1825, 1891
BceAI	ACGGC	3 cut(s)	113, 726, 993
BciT130I	CCWGG	2 cut(s)	111, 2029
BciVI	GTATCC	1 cut(s)	1510
BclI	TGATCA	2 cut(s)	283, 570
BcoDI	GTCTC	4 cut(s)	158, 161, 416, 1422
BfaI	CTAG	3 cut(s)	293, 515, 1995
BfmI	CTRYAG	1 cut(s)	446
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	2 cut(s)	41, 689
BfuAI	ACCTGC	1 cut(s)	899
BfuI	GTATCC	1 cut(s)	1510
BglI	GCCNNNNNGGC	1 cut(s)	111
BglII	AGATCT	1 cut(s)	1597
BisI	GCNGC	4 cut(s)	75, 1173, 1636, 1957
BlsI	GCNGC	4 cut(s)	76, 1174, 1637, 1958
Bme1390I	CCNGG	2 cut(s)	111, 2029
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	1657
BmiI	GGNNCC	3 cut(s)	438, 648, 1673
BmrFI	CCNGG	2 cut(s)	111, 2029
BmsI	GCATC	9 cut(s)	595, 895, 1239, 1285, 1562, 1701, 1750, 1798, 1981
BpmI	CTGGAG	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	1417
Bsa29I	ATCGAT	2 cut(s)	1125, 1650
BsaAI	YACGTR	1 cut(s)	660
BsaHI	GRCGYC	2 cut(s)	154, 437
BsaJI	CCNNGG	4 cut(s)	1161, 1239, 1957, 2002
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 1163
Bse1I	ACTGG	1 cut(s)	615
Bse3DI	GCAATG	1 cut(s)	1770
BseBI	CCWGG	2 cut(s)	111, 2029
BseCI	ATCGAT	2 cut(s)	1125, 1650
BseDI	CCNNGG	4 cut(s)	1161, 1239, 1957, 2002
BseGI	GGATG	6 cut(s)	106, 177, 528, 607, 1288, 1592
BseLI	CCNNNNNNNGG	2 cut(s)	73, 1163
BseMI	GCAATG	1 cut(s)	1770
BseMII	CTCAG	1 cut(s)	1451
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	654
BseXI	GCAGC	1 cut(s)	1184
BseYI	CCCAGC	1 cut(s)	590
Bsh1236I	CGCG	4 cut(s)	70, 169, 1638, 1959
BshFI	GGCC	1 cut(s)	1658
BshNI	GGYRCC	3 cut(s)	436, 646, 1671
BshVI	ATCGAT	2 cut(s)	1125, 1650
BsiHKAI	GWGCWC	2 cut(s)	1059, 1742
BslFI	GGGAC	2 cut(s)	740, 1704
BslI	CCNNNNNNNGG	2 cut(s)	73, 1163
BsmAI	GTCTC	4 cut(s)	158, 161, 416, 1422
BsmBI	CGTCTC	2 cut(s)	158, 161
BsmFI	GGGAC	2 cut(s)	740, 1704
BsmI	GAATGC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	1658
Bsp1286I	GDGCHC	2 cut(s)	1059, 1742
Bsp1407I	TGTACA	1 cut(s)	1890
Bsp143I	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
Bsp19I	CCATGG	1 cut(s)	2002
BspACI	CCGC	9 cut(s)	68, 74, 126, 169, 804, 1521, 1636, 1957, 1959
BspANI	GGCC	1 cut(s)	1658
BspCNI	CTCAG	1 cut(s)	1452
BspDI	ATCGAT	2 cut(s)	1125, 1650
BspFNI	CGCG	4 cut(s)	70, 169, 1638, 1959
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	3 cut(s)	438, 648, 1673
BspMAI	CTGCAG	1 cut(s)	450
BspMI	ACCTGC	1 cut(s)	899
BspT107I	GGYRCC	3 cut(s)	436, 646, 1671
BspTI	CTTAAG	2 cut(s)	41, 689
BsrDI	GCAATG	1 cut(s)	1770
BsrGI	TGTACA	1 cut(s)	1890
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	4 cut(s)	1161, 1239, 1957, 2002
BssMI	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
BssNAI	GTATAC	1 cut(s)	1616
BssNI	GRCGYC	2 cut(s)	154, 437
BssT1I	CCWWGG	3 cut(s)	1161, 1239, 2002
Bst1107I	GTATAC	1 cut(s)	1616
Bst2UI	CCWGG	2 cut(s)	111, 2029
Bst6I	CTCTTC	2 cut(s)	751, 802
BstACI	GRCGYC	2 cut(s)	154, 437
BstAFI	CTTAAG	2 cut(s)	41, 689
BstAUI	TGTACA	1 cut(s)	1890
BstBAI	YACGTR	1 cut(s)	660
BstC8I	GCNNGC	4 cut(s)	72, 332, 336, 1158
BstDEI	CTNAG	1 cut(s)	1460
BstDSI	CCRYGG	2 cut(s)	1957, 2002
BstF5I	GGATG	6 cut(s)	106, 177, 528, 607, 1288, 1592
BstFNI	CGCG	4 cut(s)	70, 169, 1638, 1959
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	8 cut(s)	286, 347, 573, 580, 703, 1125, 1600, 1650
BstMAI	GTCTC	4 cut(s)	158, 161, 416, 1422
BstMBI	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 111, 125, 434, 445
BstNI	CCWGG	2 cut(s)	111, 2029
BstNSI	RCATGY	1 cut(s)	1891
BstSCI	CCNGG	2 cut(s)	109, 2027
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	4 cut(s)	70, 169, 1638, 1959
BstV1I	GCAGC	1 cut(s)	1184
BstX2I	RGATCY	1 cut(s)	1597
BstYI	RGATCY	1 cut(s)	1597
BstZ17I	GTATAC	1 cut(s)	1616
Bsu15I	ATCGAT	2 cut(s)	1125, 1650
BsuI	GTATCC	1 cut(s)	1510
BsuRI	GGCC	1 cut(s)	1658
BsuTUI	ATCGAT	2 cut(s)	1125, 1650
BtgI	CCRYGG	2 cut(s)	1957, 2002
BtgZI	GCGATG	1 cut(s)	918
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	6 cut(s)	106, 177, 528, 607, 1288, 1592
BtsI	GCAGTG	2 cut(s)	1273, 1800
BtsIMutI	CAGTG	5 cut(s)	564, 608, 1273, 1800, 1878
BveI	ACCTGC	1 cut(s)	899
Cac8I	GCNNGC	4 cut(s)	72, 332, 336, 1158
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	1657
Cfr42I	CCGCGG	1 cut(s)	1960
ClaI	ATCGAT	2 cut(s)	1125, 1650
CseI	GACGC	3 cut(s)	175, 1287, 1332
Csp6I	GTAC	1 cut(s)	1891
CviQI	GTAC	1 cut(s)	1891
DdeI	CTNAG	1 cut(s)	1460
DinI	GGCGCC	1 cut(s)	438
DpnI	GATC	8 cut(s)	285, 346, 572, 579, 702, 1124, 1599, 1649
DpnII	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
DraI	TTTAAA	1 cut(s)	825
DrdI	GACNNNNNNGTC	1 cut(s)	236
DseDI	GACNNNNNNGTC	1 cut(s)	236
Eam1104I	CTCTTC	2 cut(s)	751, 802
EarI	CTCTTC	2 cut(s)	751, 802
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	3 cut(s)	1161, 1239, 2002
Eco72I	CACGTG	1 cut(s)	660
EcoRI	GAATTC	2 cut(s)	1063, 1979
EcoRII	CCWGG	2 cut(s)	109, 2027
EcoT14I	CCWWGG	3 cut(s)	1161, 1239, 2002
EcoT22I	ATGCAT	3 cut(s)	1294, 1408, 1716
EgeI	GGCGCC	1 cut(s)	438
EheI	GGCGCC	1 cut(s)	438
ErhI	CCWWGG	3 cut(s)	1161, 1239, 2002
Esp3I	CGTCTC	2 cut(s)	158, 161
FalI	AAGNNNNNCTT	2 cut(s)	1560, 1592
FaqI	GGGAC	2 cut(s)	740, 1704
FauI	CCCGC	1 cut(s)	75
FauNDI	CATATG	1 cut(s)	1294
FbaI	TGATCA	2 cut(s)	283, 570
FblI	GTMKAC	1 cut(s)	1615
Fnu4HI	GCNGC	4 cut(s)	75, 1173, 1636, 1957
FokI	GGATG	6 cut(s)	93, 184, 535, 614, 1295, 1599
Fsp4HI	GCNGC	4 cut(s)	75, 1173, 1636, 1957
FspBI	CTAG	3 cut(s)	293, 515, 1995
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	4 cut(s)	75, 1173, 1636, 1957
GsaI	CCCAGC	1 cut(s)	594
GsuI	CTGGAG	1 cut(s)	450
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	1658
HgaI	GACGC	3 cut(s)	175, 1287, 1332
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	2 cut(s)	154, 437
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HincII	GTYRAC	1 cut(s)	1072
HindII	GTYRAC	1 cut(s)	1072
HpaI	GTTAAC	1 cut(s)	1072
HphI	GGTGA	4 cut(s)	18, 1258, 1454, 1559
Hpy166II	GTNNAC	4 cut(s)	136, 1072, 1616, 2023
Hpy188I	TCNGA	9 cut(s)	58, 152, 163, 634, 759, 1427, 1461, 1602, 1794
Hpy8I	GTNNAC	4 cut(s)	136, 1072, 1616, 2023
Hpy99I	CGWCG	4 cut(s)	134, 156, 200, 233
HpyAV	CCTTC	2 cut(s)	481, 1829
HpyCH4IV	ACGT	4 cut(s)	36, 154, 452, 659
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 111, 125, 434, 445
HpyF3I	CTNAG	1 cut(s)	1460
HpySE526I	ACGT	4 cut(s)	36, 154, 452, 659
Hsp92I	GRCGYC	2 cut(s)	154, 437
HspAI	GCGC	1 cut(s)	437
KasI	GGCGCC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	283, 570
KspAI	GTTAAC	1 cut(s)	1072
KspI	CCGCGG	1 cut(s)	1960
Kzo9I	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
LmnI	GCTCC	3 cut(s)	1054, 1381, 1786
Lsp1109I	GCAGC	1 cut(s)	1184
LweI	GCATC	9 cut(s)	595, 895, 1239, 1285, 1562, 1701, 1750, 1798, 1981
MaeI	CTAG	3 cut(s)	293, 515, 1995
MaeII	ACGT	4 cut(s)	36, 154, 452, 659
MaeIII	GTNAC	7 cut(s)	24, 210, 557, 655, 976, 1813, 1883
MalI	GATC	8 cut(s)	285, 346, 572, 579, 702, 1124, 1599, 1649
MboI	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
MflI	RGATCY	1 cut(s)	1597
MhlI	GDGCHC	2 cut(s)	1059, 1742
Mly113I	GGCGCC	1 cut(s)	437
MlyI	GAGTC	6 cut(s)	94, 410, 737, 763, 1424, 1686
MmeI	TCCRAC	6 cut(s)	175, 717, 927, 1089, 1831, 2039
Mph1103I	ATGCAT	3 cut(s)	1294, 1408, 1716
MroXI	GAANNNNTTC	1 cut(s)	491
MslI	CAYNNNNRTG	3 cut(s)	217, 1281, 1829
MspA1I	CMGCKG	2 cut(s)	1175, 1959
MspCI	CTTAAG	2 cut(s)	41, 689
MspR9I	CCNGG	2 cut(s)	111, 2029
Mva1269I	GAATGC	1 cut(s)	315
MvaI	CCWGG	2 cut(s)	111, 2029
MvnI	CGCG	4 cut(s)	70, 169, 1638, 1959
MwoI	GCNNNNNNNGC	5 cut(s)	80, 111, 125, 434, 445
NarI	GGCGCC	1 cut(s)	437
NcoI	CCATGG	1 cut(s)	2002
NdeI	CATATG	1 cut(s)	1294
NdeII	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
NlaIV	GGNNCC	3 cut(s)	438, 648, 1673
NmuCI	GTSAC	3 cut(s)	24, 210, 655
NsiI	ATGCAT	3 cut(s)	1294, 1408, 1716
NspI	RCATGY	1 cut(s)	1891
PagI	TCATGA	1 cut(s)	780
PciI	ACATGT	1 cut(s)	1887
PcsI	WCGNNNNNNNCGW	1 cut(s)	417
PctI	GAATGC	1 cut(s)	315
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	6 cut(s)	92, 192, 340, 1047, 1839, 2056
PkrI	GCNGC	4 cut(s)	76, 1174, 1637, 1958
PleI	GAGTC	6 cut(s)	94, 409, 737, 763, 1424, 1686
PluTI	GGCGCC	1 cut(s)	440
PmaCI	CACGTG	1 cut(s)	660
PmlI	CACGTG	1 cut(s)	660
PpsI	GAGTC	6 cut(s)	94, 409, 737, 763, 1424, 1686
Ppu21I	YACGTR	1 cut(s)	660
PscI	ACATGT	1 cut(s)	1887
PshBI	ATTAAT	1 cut(s)	1409
PsiI	TTATAA	3 cut(s)	351, 666, 1086
Psp6I	CCWGG	2 cut(s)	109, 2027
PspCI	CACGTG	1 cut(s)	660
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	2 cut(s)	109, 2027
PspN4I	GGNNCC	3 cut(s)	438, 648, 1673
PspPI	GGNCC	1 cut(s)	1657
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	1597
PvuII	CAGCTG	1 cut(s)	1175
RsaI	GTAC	1 cut(s)	1892
RsaNI	GTAC	1 cut(s)	1891
RseI	CAYNNNNRTG	3 cut(s)	217, 1281, 1829
SacII	CCGCGG	1 cut(s)	1960
SatI	GCNGC	4 cut(s)	75, 1173, 1636, 1957
Sau3AI	GATC	8 cut(s)	283, 344, 570, 577, 700, 1122, 1597, 1647
Sau96I	GGNCC	1 cut(s)	1657
SchI	GAGTC	6 cut(s)	94, 410, 737, 763, 1424, 1686
ScrFI	CCNGG	2 cut(s)	111, 2029
SduI	GDGCHC	2 cut(s)	1059, 1742
SfaNI	GCATC	9 cut(s)	595, 895, 1239, 1285, 1562, 1701, 1750, 1798, 1981
SfcI	CTRYAG	1 cut(s)	446
SfoI	GGCGCC	1 cut(s)	438
Sfr303I	CCGCGG	1 cut(s)	1960
SgrBI	CCGCGG	1 cut(s)	1960
SmiMI	CAYNNNNRTG	3 cut(s)	217, 1281, 1829
SmlI	CTYRAG	3 cut(s)	41, 689, 1432
SmoI	CTYRAG	3 cut(s)	41, 689, 1432
SsiI	CCGC	9 cut(s)	68, 74, 126, 169, 804, 1521, 1636, 1957, 1959
SspDI	GGCGCC	1 cut(s)	436
SspMI	CTAG	3 cut(s)	293, 515, 1995
StyD4I	CCNGG	2 cut(s)	109, 2027
StyI	CCWWGG	3 cut(s)	1161, 1239, 2002
TaiI	ACGT	4 cut(s)	39, 157, 455, 662
TatI	WGTACW	1 cut(s)	1890
TauI	GCSGC	3 cut(s)	77, 1638, 1959
TfiI	GAWTC	6 cut(s)	92, 192, 340, 1047, 1839, 2056
TscAI	CASTG	5 cut(s)	571, 615, 1273, 1807, 1878
TseFI	GTSAC	3 cut(s)	24, 210, 655
TseI	GCWGC	1 cut(s)	1172
Tsp45I	GTSAC	3 cut(s)	24, 210, 655
TspDTI	ATGAA	5 cut(s)	639, 857, 1143, 1718, 1952
TspGWI	ACGGA	2 cut(s)	279, 1599
TspRI	CASTG	5 cut(s)	571, 615, 1273, 1807, 1878
Vha464I	CTTAAG	2 cut(s)	41, 689
VspI	ATTAAT	1 cut(s)	1409
XapI	RAATTY	5 cut(s)	1063, 1348, 1387, 1541, 1979
XbaI	TCTAGA	2 cut(s)	292, 514
XceI	RCATGY	1 cut(s)	1891
XmiI	GTMKAC	1 cut(s)	1615
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	3 cut(s)	293, 515, 1995
ZraI	GACGTC	1 cut(s)	155
Zsp2I	ATGCAT	3 cut(s)	1294, 1408, 1716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.