Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013532

Physical Location & Seq

Genomic Coordinates Forward (+)

38315471 .. 38318777

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGGTCGACTTCCCGAAATCCCTGTCCCCCAAGCGCGTCCTCAAGCTCCTCCAAGCCGAAAAGAACACCCACTCCGCACTCGCCCTCCTCGACTCCGCCACTCGCCACCCCAACTACACCCACTCCCCCGACGTCTTCCACCACATCCTCCGCCGCCTCATCCACCCCAACCTCGTCGCCCACGTCGCTCGGGTCGTCGAGCTCATCCGCACCCAGAAATGCCACTGCCCCGAGGACGTGGCACTGACCGTGATCAAAGCGTACGCCAAAAACTCAATGCCTGATAAAGCCCTGCAAGTCTTCCAGCAAATGCGAGAGATTTTCGGGTGCGAGCCCGGCATTCGATCCTACAATTCTCTTCTAAACGCCTTCATTGAGTCCAACCAGTGGGACCGAGCCGAGCAGTTGTTTGCTTATTTCGAAACGGTGGGGTTGTCCCCAAATTTGCAGACGTACAACACTCTGATCAAGATTTCGTGCAAGAAGAAGCAGTTTGAGAAGGCCAGGGGGTTGCTGGATTGGATGTGCGAGAAGGGTTTGGAGCCTGATGTGATGAGTTACGGAACTTTGATCAATGCGTTTGCGAAAAATGGGAAGCTGGGGGATGCATTGCAGGTGTTCGACGAAATGCCTCTGAGAGGAGTCAGTCCTGATGTCATGTGTTATAATATTTTGATTGAGGGGTTTTTTCGGAAAGGCGAATATGTGGAGGCTAAGGAGGTTTGGGAGAGGTTGGTGATGGACTCGGAGGCTTATCCGAATGTTGTTAGTTATAATGTTATGATCAGTGGTTTGTGCAAATGCGGGAGGTTTGGTGAGAGTTTGGAGATATGGAATAGGATGAAGAGGAATGAAAGAGGATGTGATTTGTTTACTTGTAGTTCTTTGATTCATGGGTTGTGTAAAGCGGGGAATGTGGATGAGGCGGAGAGAGTTTATAAGGATATGGTTGAGAAGGGAGTAATGCCGGATGTGGTTATGTATAATGCAATGCTCGATGGTTTCTGCCAAGCAGGGAAGATTGGACAGTGCTTTGAGTTGTGGGAGGTGATGGAGAAGGGTGGTTGTCGTAATGTTGTGAGTTATAACATATTGATCAAAGGGTTGTTTGAAAATAAGAAGGCAGAGGAAGCAATGTCTGTCTGGGAATTAATGCATGAGAAGGCTTGTGTTGCAGATTCCACAACTTATGGAGTATTAATTCATGGACTGTGTAAGAATGGTTACTTGAACAAGGCTCTATGGATTTTAAAAGAGGCGGAAAATGCAAGAGCTGATCTTGATGTCTTTGCATATTCCTCATTGATTAATTGGTTATGCAAAGAAGGGAGACTGGATGAAGCAGCCAGAATCCTTGATCAGATGGTTAACTGTGGCTATAAACCGAATTCTCATGTTTGCAATTCATTGATATATGGCTTTATCCAAGCTACCAAACTTGAAGATGCAATTTGCTTTTTTAGGGGAATGTCCACCAAGTATTGCTCTCCAAATGTTGCCTCCTACAATACTCTGATAAATGGCTTATGCAAAGTGGGAAGATTTAGCGACGCATATGTGTTTGTGAGGGAAATGCTGGAGACAGGCTGGACACTAGATGTGATCACATATAGTTTGTTAATTGATGGGCTTTGTCAAGGCAGGAAGATTGACATGGCCCTCAATTTGTGGAATCAAGCCCTTGACAAGGGATTCGAGCCTGATGTAACTGTGTACAACATTATGATTCATGGACTTTGCTCTGCAGGCAAAGCTGACGGTGCTTTGCAGCTATATTTTCAGATGGGGTGTAGGAACTGTGTTCCGAATCTTGTGACACACAACACCCTAATGGAGGGTTTTTACAAAATTAGAGACTGTGGAAAGGCATCAGAAATTTGGGCTCGCATTTTAAAGGATGGGCTACAACCAGATATAATTTCCTATAATATTACTCTGAAGGGGCTTTGTTCATGCAGTAGAATATCAGATGCTGTTGGGTACTTAGAAAAAGCTTTGCATCATGGAGTTCTTCCAACTCATATAACGTGGCACATACTTGTTAGGGCAGTGGTCAACAATGGGGCCACTATGCAGTCTTCTTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

696

Amino Acids

78.5

Weight (kDa)

6.97

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	80 - 209	1.4e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	83 - 123	3.4e-06	PPR repeat family
PPR_3	PF13812	110 - 158	1.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	112 - 161	7.2e-10	PPR repeat family
PPR_long	PF17177	132 - 234	7.4e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	147 - 196	4.8e-14	PPR repeat family
PPR_3	PF13812	171 - 226	2.8e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	178 - 210	1.6e-11	PPR repeat
PPR_2	PF13041	182 - 230	5.5e-15	PPR repeat family
PPR	PF01535	186 - 215	3.7e-07	PPR repeat
PPR_3	PF13812	207 - 263	8.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	213 - 244	8e-08	PPR repeat
PPR_2	PF13041	253 - 302	9.6e-15	PPR repeat family
PPR_1	PF12854	253 - 282	1.2e-08	PPR repeat
PPR	PF01535	256 - 284	2e-08	PPR repeat
PPR_long	PF17177	273 - 357	2.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	279 - 333	3.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	289 - 326	7.2e-10	PPR repeat family
PPR_1	PF12854	289 - 317	2.7e-08	PPR repeat
PPR	PF01535	291 - 321	4.8e-09	PPR repeat
PPR_3	PF13812	311 - 367	2.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	319 - 352	1.6e-09	PPR repeat
PPR_2	PF13041	323 - 356	9e-09	PPR repeat family
PPR	PF01535	326 - 356	1.5e-06	PPR repeat
PPR_2	PF13041	357 - 406	4.1e-15	PPR repeat family
PPR_1	PF12854	390 - 419	2.4e-06	PPR repeat
PPR_1	PF12854	427 - 456	2e-09	PPR repeat
PPR_2	PF13041	428 - 474	2e-11	PPR repeat family
PPR	PF01535	431 - 459	1.9e-06	PPR repeat
PPR_3	PF13812	450 - 507	3.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	462 - 511	3.1e-12	PPR repeat family
PPR_1	PF12854	495 - 525	5.8e-12	PPR repeat
PPR_2	PF13041	497 - 546	7.8e-16	PPR repeat family
PPR	PF01535	501 - 528	6.9e-06	PPR repeat
PPR_2	PF13041	533 - 580	1.8e-13	PPR repeat family
PPR_3	PF13812	560 - 612	4.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	563 - 595	4e-09	PPR repeat
PPR_2	PF13041	567 - 616	7.8e-14	PPR repeat family
PPR	PF01535	571 - 600	5.6e-06	PPR repeat
PPR_2	PF13041	602 - 650	2.1e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09060 AT3G09060
fragaria_vesca	FvH4_6g11981
malus_domestica	MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica	Prupe.6G271000_v2.0.a1
pyrus_communis	pycom12g15230
rosa_chinensis	RchiOBHm_Chr3g0463821
rosa_laevigata	RLG00000024754
rosa_multiflora	Rmu_sc0004796.1_g000010
rosa_roxburghii	Rroxscaffold_6G00416270
rosa_rugosa	Rorug03G0068000 Rorug03G0068100
rosa_samantha	Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana	Rw3G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	666, 774, 939, 1086
AarI	CACCTGC	1 cut(s)	604
AatII	GACGTC	1 cut(s)	135
Acc36I	ACCTGC	1 cut(s)	604
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	36
AciI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 1259
AclWI	GGATC	1 cut(s)	339
AcsI	RAATTY	3 cut(s)	442, 1387, 1875
AcuI	CTGAAG	1 cut(s)	1958
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	4 cut(s)	263, 455, 1715, 1982
AfiI	CCNNNNNNNGG	4 cut(s)	387, 638, 1687, 1834
AgsI	TTSAA	3 cut(s)	1112, 1231, 1442
AjiI	CACGTC	2 cut(s)	184, 238
AjnI	CCWGG	1 cut(s)	503
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	8 cut(s)	46, 202, 598, 1274, 1430, 1754, 1771, 1994
AluI	AGCT	8 cut(s)	46, 202, 598, 1274, 1430, 1754, 1771, 1994
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	3 cut(s)	1324, 1574, 1848
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	1 cut(s)	1973
Ama87I	CYCGRG	2 cut(s)	189, 230
AoxI	GGCC	3 cut(s)	501, 1656, 2064
ApeKI	GCWGC	2 cut(s)	1343, 1768
ApoI	RAATTY	3 cut(s)	442, 1387, 1875
ArsI	GACNNNNNNTTYG	4 cut(s)	8, 40, 1676, 1708
AseI	ATTAAT	3 cut(s)	1151, 1199, 1308
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	3 cut(s)	391, 1657, 2064
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	3 cut(s)	748, 827, 1060
AsuII	TTCGAA	1 cut(s)	420
AvaI	CYCGRG	2 cut(s)	189, 230
AvaII	GGWCC	1 cut(s)	391
BanII	GRGCYC	3 cut(s)	204, 336, 1885
BbsI	GAAGAC	3 cut(s)	127, 292, 2070
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	1355, 1780
BccI	CCATC	7 cut(s)	733, 992, 1045, 1357, 1619, 1777, 1892
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	7 cut(s)	252, 465, 570, 783, 1095, 1357, 1602
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	1324, 1574, 1848
BfaI	CTAG	1 cut(s)	1595
BfmI	CTRYAG	1 cut(s)	1743
BfuAI	ACCTGC	1 cut(s)	604
BisI	GCNGC	3 cut(s)	154, 1344, 1769
BlsI	GCNGC	3 cut(s)	155, 1345, 1770
Bme1390I	CCNGG	2 cut(s)	336, 505
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	2 cut(s)	189, 230
BmgBI	CACGTC	2 cut(s)	184, 238
BmgT120I	GGNCC	3 cut(s)	391, 1657, 2064
BmiI	GGNNCC	3 cut(s)	392, 543, 2065
BmrFI	CCNGG	2 cut(s)	336, 505
BmsI	GCATC	5 cut(s)	595, 1435, 1877, 1960, 2008
BpiI	GAAGAC	3 cut(s)	127, 292, 2070
BpmI	CTGGAG	1 cut(s)	1598
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	231, 504
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 69, 86, 99, 107, 137, 799, 829
Bsc4I	CCNNNNNNNGG	4 cut(s)	387, 638, 1687, 1834
Bse1I	ACTGG	2 cut(s)	385, 1338
Bse3DI	GCAATG	3 cut(s)	608, 996, 1140
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	231, 504
BseLI	CCNNNNNNNGG	4 cut(s)	387, 638, 1687, 1834
BseMI	GCAATG	3 cut(s)	608, 996, 1140
BseMII	CTCAG	1 cut(s)	626
BseNI	ACTGG	2 cut(s)	385, 1338
BseRI	GAGGAG	3 cut(s)	38, 77, 654
BseXI	GCAGC	2 cut(s)	1355, 1780
BseYI	CCCAGC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	503, 1658, 2066
BsiHKAI	GWGCWC	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	189, 230
BsiSI	CCGG	2 cut(s)	336, 968
BsiWI	CGTACG	1 cut(s)	261
BslFI	GGGAC	3 cut(s)	10, 404, 421
BslI	CCNNNNNNNGG	4 cut(s)	387, 638, 1687, 1834
BsmAI	GTCTC	3 cut(s)	1324, 1574, 1848
BsmFI	GGGAC	3 cut(s)	10, 404, 421
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	3 cut(s)	503, 1658, 2066
BsoBI	CYCGRG	2 cut(s)	189, 230
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	3 cut(s)	204, 336, 1885
Bsp1407I	TGTACA	1 cut(s)	1713
Bsp143I	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
BspACI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 1259
BspANI	GGCC	3 cut(s)	503, 1658, 2066
BspCNI	CTCAG	1 cut(s)	627
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	392, 543, 2065
BspMAI	CTGCAG	1 cut(s)	1747
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	420
BsrDI	GCAATG	3 cut(s)	608, 996, 1140
BsrGI	TGTACA	1 cut(s)	1713
BsrI	ACTGG	2 cut(s)	385, 1338
BssECI	CCNNGG	2 cut(s)	231, 504
BssMI	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	9 cut(s)	250, 427, 1029, 1212, 1373, 1711, 1760, 1799, 1859
Bst6I	CTCTTC	2 cut(s)	363, 839
BstACI	GRCGYC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	1713
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	332, 1747, 1885
BstDEI	CTNAG	3 cut(s)	635, 714, 1984
BstENI	CCTNNNNNAGG	3 cut(s)	636, 1685, 1832
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	9 cut(s)	255, 347, 468, 573, 786, 1098, 1279, 1360, 1605
BstMAI	GTCTC	3 cut(s)	1324, 1574, 1848
BstMBI	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
BstMWI	GCNNNNNNNGC	8 cut(s)	185, 336, 1130, 1172, 1265, 1746, 1751, 1760
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	334, 503
BstSFI	CTRYAG	1 cut(s)	1743
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	1355, 1780
BstV2I	GAAGAC	3 cut(s)	127, 292, 2070
BsuRI	GGCC	3 cut(s)	503, 1658, 2066
BtrI	CACGTC	2 cut(s)	184, 238
BtsI	GCAGTG	2 cut(s)	223, 2055
BtsIMutI	CAGTG	6 cut(s)	223, 242, 392, 793, 1034, 2055
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	3 cut(s)	332, 1747, 1885
CaiI	CAGNNNCTG	1 cut(s)	1973
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	3 cut(s)	391, 1657, 2064
CseI	GACGC	2 cut(s)	25, 1559
Csp6I	GTAC	4 cut(s)	262, 454, 1714, 1981
CviAII	CATG	9 cut(s)	658, 893, 1157, 1205, 1394, 1654, 1730, 1953, 2003
CviQI	GTAC	4 cut(s)	262, 454, 1714, 1981
DdeI	CTNAG	3 cut(s)	635, 714, 1984
DpnI	GATC	9 cut(s)	254, 346, 467, 572, 785, 1097, 1278, 1359, 1604
DpnII	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
DraI	TTTAAA	2 cut(s)	1251, 1893
Eam1104I	CTCTTC	2 cut(s)	363, 839
EarI	CTCTTC	2 cut(s)	363, 839
EciI	GGCGGA	4 cut(s)	85, 140, 941, 1274
Ecl136II	GAGCTC	1 cut(s)	202
Eco24I	GRGCYC	3 cut(s)	204, 336, 1885
Eco47I	GGWCC	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	1958
Eco88I	CYCGRG	2 cut(s)	189, 230
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	3 cut(s)	636, 1685, 1832
EcoRI	GAATTC	1 cut(s)	1387
EcoRII	CCWGG	1 cut(s)	503
EcoT22I	ATGCAT	2 cut(s)	610, 1158
EcoT38I	GRGCYC	3 cut(s)	204, 336, 1885
FaeI	CATG	9 cut(s)	661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
FaqI	GGGAC	3 cut(s)	10, 404, 421
FatI	CATG	9 cut(s)	657, 892, 1156, 1204, 1393, 1653, 1729, 1952, 2002
FauI	CCCGC	2 cut(s)	797, 901
FauNDI	CATATG	1 cut(s)	1555
FbaI	TGATCA	7 cut(s)	252, 465, 570, 783, 1095, 1357, 1602
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	154, 1344, 1769
FriOI	GRGCYC	3 cut(s)	204, 336, 1885
Fsp4HI	GCNGC	3 cut(s)	154, 1344, 1769
FspBI	CTAG	1 cut(s)	1595
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	3 cut(s)	154, 1344, 1769
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	1598
HaeIII	GGCC	3 cut(s)	503, 1658, 2066
HapII	CCGG	2 cut(s)	336, 968
HgaI	GACGC	2 cut(s)	25, 1559
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	9 cut(s)	661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	3 cut(s)	7, 1369, 2056
HindII	GTYRAC	3 cut(s)	7, 1369, 2056
HindIII	AAGCTT	1 cut(s)	1992
HpaI	GTTAAC	1 cut(s)	1369
HpaII	CCGG	2 cut(s)	336, 968
HphI	GGTGA	3 cut(s)	748, 827, 1060
Hpy166II	GTNNAC	6 cut(s)	7, 873, 1369, 1473, 1714, 2056
Hpy188III	TCNNGA	4 cut(s)	13, 469, 650, 1280
Hpy8I	GTNNAC	6 cut(s)	7, 873, 1369, 1473, 1714, 2056
Hpy99I	CGWCG	6 cut(s)	134, 179, 188, 200, 626, 1553
HpyAV	CCTTC	9 cut(s)	379, 493, 526, 949, 1051, 1114, 1156, 1319, 1933
HpyCH4III	ACNGT	9 cut(s)	250, 427, 1029, 1212, 1373, 1711, 1760, 1799, 1859
HpyCH4IV	ACGT	5 cut(s)	132, 183, 237, 452, 2027
HpyF10VI	GCNNNNNNNGC	8 cut(s)	185, 336, 1130, 1172, 1265, 1746, 1751, 1760
HpyF3I	CTNAG	3 cut(s)	635, 714, 1984
HpySE526I	ACGT	5 cut(s)	132, 183, 237, 452, 2027
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	9 cut(s)	661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	7 cut(s)	252, 465, 570, 783, 1095, 1357, 1602
KspAI	GTTAAC	1 cut(s)	1369
Kzo9I	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
LmnI	GCTCC	2 cut(s)	51, 541
Lsp1109I	GCAGC	2 cut(s)	1355, 1780
LweI	GCATC	5 cut(s)	595, 1435, 1877, 1960, 2008
MaeI	CTAG	1 cut(s)	1595
MaeII	ACGT	5 cut(s)	132, 183, 237, 452, 2027
MaeIII	GTNAC	4 cut(s)	557, 1223, 1705, 1813
MalI	GATC	9 cut(s)	254, 346, 467, 572, 785, 1097, 1278, 1359, 1604
MboI	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
MhlI	GDGCHC	3 cut(s)	204, 336, 1885
MlyI	GAGTC	4 cut(s)	86, 386, 651, 737
MmeI	TCCRAC	2 cut(s)	405, 2039
Mph1103I	ATGCAT	2 cut(s)	610, 1158
MseI	TTAA	8 cut(s)	1151, 1199, 1250, 1308, 1368, 1619, 1892, 2089
MslI	CAYNNNNRTG	1 cut(s)	1829
MspI	CCGG	2 cut(s)	336, 968
MspR9I	CCNGG	2 cut(s)	336, 505
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	8 cut(s)	185, 336, 1130, 1172, 1265, 1746, 1751, 1760
NciI	CCSGG	1 cut(s)	336
NdeI	CATATG	1 cut(s)	1555
NdeII	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
NlaIII	CATG	9 cut(s)	661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
NlaIV	GGNNCC	3 cut(s)	392, 543, 2065
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	1813
NsiI	ATGCAT	2 cut(s)	610, 1158
NspV	TTCGAA	1 cut(s)	420
PaqCI	CACCTGC	1 cut(s)	604
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 180, 192
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	7 cut(s)	889, 1178, 1350, 1672, 1692, 1726, 1807
Pfl23II	CGTACG	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	3 cut(s)	155, 1345, 1770
PleI	GAGTC	4 cut(s)	86, 385, 650, 737
PpsI	GAGTC	4 cut(s)	86, 385, 650, 737
PshBI	ATTAAT	3 cut(s)	1151, 1199, 1308
PsiI	TTATAA	4 cut(s)	666, 774, 939, 1086
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	503
PspLI	CGTACG	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	392, 543, 2065
PspPI	GGNCC	3 cut(s)	391, 1657, 2064
PstI	CTGCAG	1 cut(s)	1747
PstNI	CAGNNNCTG	1 cut(s)	1973
RsaI	GTAC	4 cut(s)	263, 455, 1715, 1982
RsaNI	GTAC	4 cut(s)	262, 454, 1714, 1981
RseI	CAYNNNNRTG	1 cut(s)	1829
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	8 cut(s)	1151, 1199, 1250, 1308, 1368, 1619, 1892, 2089
SatI	GCNGC	3 cut(s)	154, 1344, 1769
Sau3AI	GATC	9 cut(s)	252, 344, 465, 570, 783, 1095, 1276, 1357, 1602
Sau96I	GGNCC	3 cut(s)	391, 1657, 2064
SchI	GAGTC	4 cut(s)	86, 386, 651, 737
ScrFI	CCNGG	2 cut(s)	336, 505
SduI	GDGCHC	3 cut(s)	204, 336, 1885
SfaNI	GCATC	5 cut(s)	595, 1435, 1877, 1960, 2008
SfcI	CTRYAG	1 cut(s)	1743
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	1829
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SsiI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 1259
SspI	AATATT	2 cut(s)	670, 1930
SspMI	CTAG	1 cut(s)	1595
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	334, 503
TaaI	ACNGT	9 cut(s)	250, 427, 1029, 1212, 1373, 1711, 1760, 1799, 1859
TaiI	ACGT	5 cut(s)	135, 186, 240, 455, 2030
TaqI	TCGA	8 cut(s)	6, 90, 198, 343, 420, 621, 996, 1695
TaqII	GACCGA	1 cut(s)	408
TatI	WGTACW	1 cut(s)	1713
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	7 cut(s)	889, 1178, 1350, 1672, 1692, 1726, 1807
Tru1I	TTAA	8 cut(s)	1151, 1199, 1250, 1308, 1368, 1619, 1892, 2089
Tru9I	TTAA	8 cut(s)	1151, 1199, 1250, 1308, 1368, 1619, 1892, 2089
TscAI	CASTG	6 cut(s)	230, 249, 392, 793, 1034, 2055
TseFI	GTSAC	1 cut(s)	1813
TseI	GCWGC	2 cut(s)	1343, 1768
Tsp45I	GTSAC	1 cut(s)	1813
TspDTI	ATGAA	9 cut(s)	361, 857, 867, 881, 1193, 1353, 1395, 1718, 1941
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	6 cut(s)	230, 249, 392, 793, 1034, 2055
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	391
VspI	ATTAAT	3 cut(s)	1151, 1199, 1308
XagI	CCTNNNNNAGG	3 cut(s)	636, 1685, 1832
XapI	RAATTY	3 cut(s)	442, 1387, 1875
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	1595
ZraI	GACGTC	1 cut(s)	133
Zsp2I	ATGCAT	2 cut(s)	610, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.