Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004796.1

Orthogroup ID

OG0013532

Physical Location & Seq

Genomic Coordinates Forward (+)

69502 .. 70518

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004796.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atggtcgacttcccgaaatccctgtcccccaagcgcgtcctcaagctcctccaagccgaaaagaacacccactccgcactcgccctcctcgactccgccactcgccaccccaactacacccactcccccgacgtcttccaccacatcctccgccgcctcatccaccccaacctcgtcgcccacgtcgctcgggtcgtcgaactcatccgcacccagaaatgccactgccccgaggacgtggcactgaccgtcatcaaagcctacgccaaaaactcaatgcctgataaagccctgcacgtcttccagcaaatgcgagagattttcgggtgcgagcccggcattcgatcctacaattctcttctaaacgccttcattgagtccaaccagtgggaccgagccgagcagttctttgcttttttcgaaacggtggggttgtccccaaatctgcagacgtacaacactctgatcaagatttcgtgcaagaagaagcagtttgagaaggccagggggctgctggattggatgtgggagaagggtttggagcctgatgtgatgagttacggaactttgatcaatgcgttggccaaaaatgggaggctgggggatgcattggaggtgttcgacgaaatgcctgagagaggactcagtcctgatgtcatgtgttataatattttgattgatgggttttttcggaaaggcgaatatgtggaggctaaggagctttgggagaggttggtgatggacccggaggcatatccgaatgctgttagttataatgttatgattagtggtttgtgcaaatgcgggaggtttggtgagactttggagatatggaataggatgacgaggaatgaaagaggatgtgatttgtttacttgtagttctttgattcatgggttgtgtaaagcggggaatgtggatgaggcggagagagtttataaggatatggttgagaagggagtagtgccggatgcggttatgtataatgcaatgctcgatggtttctgccctgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

338

Amino Acids

38.52

Weight (kDa)

6.38

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09060 AT3G09060
fragaria_vesca	FvH4_6g11981
malus_domestica	MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica	Prupe.6G271000_v2.0.a1
pyrus_communis	pycom12g15230
rosa_chinensis	RchiOBHm_Chr3g0463821
rosa_laevigata	RLG00000024754
rosa_multiflora	Rmu_sc0004796.1_g000010
rosa_roxburghii	Rroxscaffold_6G00416270
rosa_rugosa	Rorug03G0068000 Rorug03G0068100
rosa_samantha	Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana	Rw3G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	666, 774, 939
AatII	GACGTC	1 cut(s)	135
AccB7I	CCANNNNNTGG	1 cut(s)	387
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	1 cut(s)	36
AciI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 974
AclWI	GGATC	1 cut(s)	339
AcoI	YGGCCR	1 cut(s)	582
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	3 cut(s)	387, 591, 638
AjiI	CACGTC	3 cut(s)	184, 238, 298
AjnI	CCWGG	1 cut(s)	503
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	46, 721
AluI	AGCT	2 cut(s)	46, 721
Alw26I	GTCTC	1 cut(s)	812
AlwI	GGATC	1 cut(s)	339
Ama87I	CYCGRG	2 cut(s)	189, 230
AoxI	GGCC	2 cut(s)	501, 582
ApeKI	GCWGC	1 cut(s)	511
ArsI	GACNNNNNNTTYG	2 cut(s)	8, 40
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	2 cut(s)	391, 742
AsuC2I	CCSGG	2 cut(s)	336, 746
AsuHPI	GGTGA	2 cut(s)	748, 827
AsuII	TTCGAA	1 cut(s)	420
AvaI	CYCGRG	2 cut(s)	189, 230
AvaII	GGWCC	2 cut(s)	391, 742
BalI	TGGCCA	1 cut(s)	584
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	2 cut(s)	127, 292
BbvI	GCAGC	1 cut(s)	498
BccI	CCATC	3 cut(s)	674, 733, 992
BciT130I	CCWGG	1 cut(s)	505
BclI	TGATCA	2 cut(s)	465, 570
BcnI	CCSGG	2 cut(s)	336, 746
BcoDI	GTCTC	1 cut(s)	812
BfmI	CTRYAG	1 cut(s)	446
BisI	GCNGC	2 cut(s)	154, 512
BlsI	GCNGC	2 cut(s)	155, 513
Bme1390I	CCNGG	3 cut(s)	336, 505, 746
Bme18I	GGWCC	2 cut(s)	391, 742
BmeT110I	CYCGRG	2 cut(s)	189, 230
BmgBI	CACGTC	3 cut(s)	184, 238, 298
BmgT120I	GGNCC	2 cut(s)	391, 742
BmiI	GGNNCC	3 cut(s)	392, 543, 744
BmrFI	CCNGG	3 cut(s)	336, 505, 746
BmsI	GCATC	2 cut(s)	595, 961
BpiI	GAAGAC	2 cut(s)	127, 292
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	26
BpuMI	CCSGG	2 cut(s)	336, 746
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	231, 504
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 69, 86, 99, 107, 137, 799, 829
Bsc4I	CCNNNNNNNGG	3 cut(s)	387, 591, 638
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	996
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	231, 504
BseGI	GGATG	9 cut(s)	144, 159, 204, 528, 610, 846, 866, 925, 976
BseLI	CCNNNNNNNGG	3 cut(s)	387, 591, 638
BseMI	GCAATG	1 cut(s)	996
BseMII	CTCAG	2 cut(s)	624, 658
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	38, 77
BseXI	GCAGC	1 cut(s)	498
BseYI	CCCAGC	1 cut(s)	598
BsgI	GTGCAG	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	503, 584
BsiHKCI	CYCGRG	2 cut(s)	189, 230
BsiSI	CCGG	3 cut(s)	336, 746, 968
BslFI	GGGAC	3 cut(s)	10, 404, 421
BslI	CCNNNNNNNGG	3 cut(s)	387, 591, 638
BsmAI	GTCTC	1 cut(s)	812
BsmFI	GGGAC	3 cut(s)	10, 404, 421
BsmI	GAATGC	2 cut(s)	339, 766
BsnI	GGCC	2 cut(s)	503, 584
BsoBI	CYCGRG	2 cut(s)	189, 230
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	344, 465, 570
BspACI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 974
BspANI	GGCC	2 cut(s)	503, 584
BspCNI	CTCAG	2 cut(s)	625, 657
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	392, 543, 744
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	420
BsrDI	GCAATG	1 cut(s)	996
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	231, 504
BssMI	GATC	3 cut(s)	344, 465, 570
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	250, 427
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	3 cut(s)	633, 644, 714
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	9 cut(s)	144, 159, 204, 528, 610, 846, 866, 925, 976
BstFNI	CGCG	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	3 cut(s)	347, 468, 573
BstMAI	GTCTC	1 cut(s)	812
BstMBI	GATC	3 cut(s)	344, 465, 570
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 336
BstNI	CCWGG	1 cut(s)	505
BstSCI	CCNGG	3 cut(s)	334, 503, 744
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	498
BstV2I	GAAGAC	2 cut(s)	127, 292
BsuRI	GGCC	2 cut(s)	503, 584
BtrI	CACGTC	3 cut(s)	184, 238, 298
BtsCI	GGATG	9 cut(s)	144, 159, 204, 528, 610, 846, 866, 925, 976
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	3 cut(s)	223, 242, 392
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	2 cut(s)	391, 742
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	2 cut(s)	658, 893
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	3 cut(s)	633, 644, 714
DpnI	GATC	3 cut(s)	346, 467, 572
DpnII	GATC	3 cut(s)	344, 465, 570
EaeI	YGGCCR	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	3 cut(s)	85, 140, 941
Eco24I	GRGCYC	1 cut(s)	336
Eco47I	GGWCC	2 cut(s)	391, 742
Eco88I	CYCGRG	2 cut(s)	189, 230
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoRII	CCWGG	1 cut(s)	503
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	2 cut(s)	661, 896
FaqI	GGGAC	3 cut(s)	10, 404, 421
FatI	CATG	2 cut(s)	657, 892
FauI	CCCGC	2 cut(s)	797, 901
FbaI	TGATCA	2 cut(s)	465, 570
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	154, 512
FokI	GGATG	9 cut(s)	131, 146, 191, 535, 617, 853, 873, 932, 983
FriOI	GRGCYC	1 cut(s)	336
Fsp4HI	GCNGC	2 cut(s)	154, 512
GlaI	GCGC	1 cut(s)	35
GluI	GCNGC	2 cut(s)	154, 512
GsaI	CCCAGC	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	503, 584
HapII	CCGG	3 cut(s)	336, 746, 968
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	36
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	661, 896
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	4 cut(s)	92, 377, 642, 889
HpaII	CCGG	3 cut(s)	336, 746, 968
HphI	GGTGA	2 cut(s)	748, 827
Hpy166II	GTNNAC	2 cut(s)	7, 873
Hpy188I	TCNGA	3 cut(s)	465, 693, 759
Hpy188III	TCNNGA	3 cut(s)	13, 469, 650
Hpy8I	GTNNAC	2 cut(s)	7, 873
Hpy99I	CGWCG	5 cut(s)	134, 179, 188, 200, 626
HpyAV	CCTTC	4 cut(s)	379, 493, 526, 949
HpyCH4III	ACNGT	2 cut(s)	250, 427
HpyCH4IV	ACGT	5 cut(s)	132, 183, 237, 297, 452
HpyCH4V	TGCA	6 cut(s)	295, 448, 480, 608, 798, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 336
HpyF3I	CTNAG	3 cut(s)	633, 644, 714
HpySE526I	ACGT	5 cut(s)	132, 183, 237, 297, 452
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	661, 896
HspAI	GCGC	1 cut(s)	34
Ksp22I	TGATCA	2 cut(s)	465, 570
Kzo9I	GATC	3 cut(s)	344, 465, 570
LmnI	GCTCC	3 cut(s)	51, 541, 718
Lsp1109I	GCAGC	1 cut(s)	498
LweI	GCATC	2 cut(s)	595, 961
MaeII	ACGT	5 cut(s)	132, 183, 237, 297, 452
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	3 cut(s)	346, 467, 572
MboI	GATC	3 cut(s)	344, 465, 570
MboII	GAAGA	4 cut(s)	127, 292, 350, 496
MhlI	GDGCHC	1 cut(s)	336
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	1 cut(s)	352
MluNI	TGGCCA	1 cut(s)	584
MlyI	GAGTC	3 cut(s)	86, 386, 636
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	1 cut(s)	584
Mph1103I	ATGCAT	1 cut(s)	610
MscI	TGGCCA	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	3 cut(s)	336, 746, 968
MspR9I	CCNGG	3 cut(s)	336, 505, 746
Mva1269I	GAATGC	2 cut(s)	339, 766
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	185, 336
NciI	CCSGG	2 cut(s)	336, 746
NdeII	GATC	3 cut(s)	344, 465, 570
NlaIII	CATG	2 cut(s)	661, 896
NlaIV	GGNNCC	3 cut(s)	392, 543, 744
NmeAIII	GCCGAG	1 cut(s)	424
NsiI	ATGCAT	1 cut(s)	610
NspV	TTCGAA	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 180, 192
PctI	GAATGC	2 cut(s)	339, 766
PfeI	GAWTC	1 cut(s)	889
PflFI	GACNNNGTC	1 cut(s)	645
PflMI	CCANNNNNTGG	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	155, 513
PleI	GAGTC	3 cut(s)	86, 385, 636
PpsI	GAGTC	3 cut(s)	86, 385, 636
PsiI	TTATAA	3 cut(s)	666, 774, 939
Psp6I	CCWGG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	392, 543, 744
PspPI	GGNCC	2 cut(s)	391, 742
PstI	CTGCAG	1 cut(s)	450
PsyI	GACNNNGTC	1 cut(s)	645
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	5
SatI	GCNGC	2 cut(s)	154, 512
Sau3AI	GATC	3 cut(s)	344, 465, 570
Sau96I	GGNCC	2 cut(s)	391, 742
SchI	GAGTC	3 cut(s)	86, 386, 636
ScrFI	CCNGG	3 cut(s)	336, 505, 746
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	595, 961
SfcI	CTRYAG	1 cut(s)	446
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	2 cut(s)	391, 742
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	9 cut(s)	75, 96, 151, 154, 208, 804, 908, 926, 974
SspI	AATATT	1 cut(s)	670
StyD4I	CCNGG	3 cut(s)	334, 503, 744
TaaI	ACNGT	2 cut(s)	250, 427
TaiI	ACGT	5 cut(s)	135, 186, 240, 300, 455
TaqI	TCGA	7 cut(s)	6, 90, 198, 343, 420, 621, 996
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	352
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	889
TscAI	CASTG	3 cut(s)	230, 249, 392
TseI	GCWGC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	361, 867, 881
TspGWI	ACGGA	1 cut(s)	576
TspRI	CASTG	3 cut(s)	230, 249, 392
Tth111I	GACNNNGTC	1 cut(s)	645
Van91I	CCANNNNNTGG	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	391, 742
XagI	CCTNNNNNAGG	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	1 cut(s)	6
ZraI	GACGTC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.