RchiOBHm_Chr3g0463821

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013532
Physical Location & Seq
Reverse (-)
11092334 .. 11096052
3719 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43011

Sequence Viewer

Length: 2091 bp
ATGGTCGACTTCCCGAAATCCCTGTCCCCCAAGCGCGTCCTCAAGCTCCTCCAAGCCGAAAAGAACACCCACTCCGCACTCGCCCTCCTCGACTCCGCCACTCGCCACCCCAACTACACCCACTCCCCCGACGTCTTCCACCACATCCTCCGCCGCCTCATCCACCCCAACCTCGTTGCCCACGTCGCTCGGGTCGTCGAACTCATCCGCACCCAGAAATGCCACTGCCCCGAGGACGTGGCACTGACCGTCATCAAAGCCTACGCCAAAAACTCAATGCCTGATAAAGCCCTGCACGTCTTCCAGCAAATGCGAGAGATTTTCGGGTGCGAACCCGGCATTCGATCCTACAATTCTCTTCTAAACGCCTTCATTGAGTCCAACCAGTGGGACCGAGCCGAGCAGTTCTTTGCTTATTTCGAAACGGTGGGGTTGCCCCCAAATCTGCAGACGTACAACACTCTGATCAAGATTTCGTGCAAGAAGAAGCAGTTTGAGAAGGCCAGGGGGCTGCTGGATTGGATGTGGGAGAAGGGTTTGGAGCCTGATGTGATGAGTTACGGAACTTTGATCAATGCGTTGGCCAAAAATGGGAGGCTGGGGGATGCATTGGAGGTGTTCGACGAAATGCCTGAGAGAGGAGTCAGGCCTGATGTCATGTGTTATAATATTTTGATTGATGGGTTTTTTCGGAAAGGTGAATATGTGGAGGCTAAGGAGCTTTGGGAGAGGTTGGTGATGGACGCGGAGGCATATCCGAATGCTGTTAGTTATAATGTTATGATTAGTGGTTTGTGCAAATGCGGGAGGTTTGGTGAGAGTTTGGAGATATGGAATAGGATGAAGAGGAATGAAAGAGGATGTGATTTGTTTACTTGTAGTTCTTTGATTCATGGGCTGTGTAAAGCGGGGAATGTGGATGAGGCAGAGAGAGTTTATAAGGATATGGTTGAGAAGGGAGTAGTGCCGGATGCGGTTATGTATAATGCAATGCTCGATGGTTTCTGCCGAGCAGGGAAGATTGGACAGTGCTTTGAGTTGTGGGAGGTGATGGAGAAGGGTGGTTGTCGTAATGTTGTGAGTTATAACATATTGATCAAAGGGTTGTTTGAAAATAAGAAGGCAGAGGAAGCAATGTCTGTCTGGGAATTGATGCATGAGAAGGCTTGTGTTGCAGATTCCACAACTTATGGAGTATTAATTCATGGACTGTGTAAGAATGGTTACTTGAACAAGGCTCTATGGATTTTAAAAGAGGCGGAAAATGCTAGAGCTGATCTTGATGTCTTTGCATATTCCACATTGATTAATTGGTTATGCAAAGAAGGGAGACTGGATGAAGCAGCCAGAATCCTTGATCAGATGGTTAAGTGTGGCTATAAACCAAACTCTCATGTTTGCAATTCATTGATATATGGCTTTATCCAAGCTACCAAACTTGAAGATGCAATTTGCTTTTTTAGGGGAATGTCCACCAAGTATTGCTCTCCAAATGTTGTCTCCTACAATACTCTGATAAATGGCTTATGCAAAGTGGGAAGATTTAGTGATGCATATGTGTTTGTGAGGGAAATGCTGGAGACAGGGTGGACACTAGATGTGATCACATATAGTTTGTTAATTGATGGGCTTTGTCAAGGCAGGAAGATTGCCATGGCCCTCAATTTGTGGAATCAAGCCCTTGACAAGGGATTCGAACCTGATGTAACTATGTACAACATTATGATTCATGGACTTTGCTCTGCAGGCAAAGCTGAAGGTGCTTTGCAGCTATATTTTCAGATGGGGTGTAGGAACTGTGTTCCGAACCTTGTGACACACAACACCCTAATGGAGGGTTTTTACAAAATTAGAGACTGTGGAAAGGCATCAGAAATTTGGGCTCGCATTTTAAAGGATGGGCTACAACCAGATATAATTTCCTATAATATTACTCTGAAAGGGCTTTGTTCATGCAGTAGAATATCAGATGCTGTTGGGTACTTAGAAAAAGCTTTGCATCATGGAGTTCTTCCGACTCATATAACGTGGCACATACTTGTTAGGGCAGTGGTCAACGATGGGGCCACTATGCAGTCTTCTTGGGGTTAA

Protein Analysis

696

Amino Acids

78.7

Weight (kDa)

7.2

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 83 - 124 2.7e-06 PPR repeat family
TPR_24 PF23276 84 - 209 3.3e-06 Fungal tetratrico peptide repeats
PPR_3 PF13812 110 - 158 1.5e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 112 - 161 2.3e-09 PPR repeat family
PPR_long PF17177 132 - 233 3.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 147 - 196 2.6e-13 PPR repeat family
PPR_3 PF13812 171 - 227 1.4e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 178 - 210 1e-11 PPR repeat
PPR_2 PF13041 182 - 230 5.1e-16 PPR repeat family
PPR PF01535 186 - 215 2.7e-08 PPR repeat
PPR_1 PF12854 213 - 244 3e-08 PPR repeat
PPR_2 PF13041 253 - 302 4.8e-14 PPR repeat family
PPR_1 PF12854 253 - 282 5.6e-08 PPR repeat
PPR PF01535 256 - 284 2e-08 PPR repeat
PPR_long PF17177 273 - 386 6.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 279 - 333 3.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 289 - 326 1.3e-09 PPR repeat family
PPR_1 PF12854 289 - 317 2.7e-08 PPR repeat
PPR PF01535 291 - 321 4.8e-09 PPR repeat
PPR_3 PF13812 311 - 367 5e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 319 - 352 1.9e-09 PPR repeat
PPR_2 PF13041 323 - 356 2.8e-08 PPR repeat family
PPR PF01535 326 - 356 1.1e-06 PPR repeat
PPR_2 PF13041 357 - 406 4.1e-15 PPR repeat family
PPR_1 PF12854 390 - 419 2.4e-06 PPR repeat
PPR_1 PF12854 427 - 456 4.8e-10 PPR repeat
PPR_2 PF13041 428 - 473 9.9e-12 PPR repeat family
PPR PF01535 431 - 459 6.9e-07 PPR repeat
PPR_3 PF13812 450 - 507 1.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 462 - 511 1.1e-12 PPR repeat family
PPR_1 PF12854 495 - 525 4.1e-13 PPR repeat
PPR_2 PF13041 497 - 546 9.4e-17 PPR repeat family
PPR PF01535 500 - 528 2.2e-06 PPR repeat
PPR_2 PF13041 540 - 580 5.2e-09 PPR repeat family
PPR_3 PF13812 560 - 612 5.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 563 - 595 1.5e-08 PPR repeat
PPR_2 PF13041 567 - 616 8.9e-14 PPR repeat family
PPR PF01535 571 - 600 3.5e-06 PPR repeat
PPR_2 PF13041 602 - 650 2.2e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G09060 AT3G09060
fragaria_vesca FvH4_6g11981
malus_domestica MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica Prupe.6G271000_v2.0.a1
pyrus_communis pycom12g15230
rosa_chinensis RchiOBHm_Chr3g0463821
rosa_laevigata RLG00000024754
rosa_multiflora Rmu_sc0004796.1_g000010
rosa_roxburghii Rroxscaffold_6G00416270
rosa_rugosa Rorug03G0068000 Rorug03G0068100
rosa_samantha Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana Rw3G010560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 666, 774, 939, 1086
AatII GACGTC 1 cut(s) 135
AccB7I CCANNNNNTGG 1 cut(s) 387
AccI GTMKAC 1 cut(s) 6
AccII CGCG 2 cut(s) 36, 746
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 1 cut(s) 1875
AcuI CTGAAG 1 cut(s) 1776
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 3 cut(s) 455, 1715, 1982
AfiI CCNNNNNNNGG 5 cut(s) 387, 591, 638, 1687, 1834
AgsI TTSAA 3 cut(s) 1112, 1231, 1442
AjiI CACGTC 3 cut(s) 184, 238, 298
AjnI CCWGG 1 cut(s) 503
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 7 cut(s) 46, 721, 1274, 1430, 1754, 1771, 1994
AluI AGCT 7 cut(s) 46, 721, 1274, 1430, 1754, 1771, 1994
Alw26I GTCTC 4 cut(s) 1324, 1504, 1574, 1848
AlwI GGATC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 1973
Ama87I CYCGRG 2 cut(s) 189, 230
AoxI GGCC 5 cut(s) 501, 582, 647, 1656, 2064
ApeKI GCWGC 3 cut(s) 511, 1343, 1768
ApoI RAATTY 1 cut(s) 1875
ArsI GACNNNNNNTTYG 4 cut(s) 8, 40, 1676, 1708
AseI ATTAAT 2 cut(s) 1199, 1308
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 3 cut(s) 391, 1657, 2064
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 4 cut(s) 710, 748, 827, 1060
AsuII TTCGAA 2 cut(s) 420, 1695
AvaI CYCGRG 2 cut(s) 189, 230
AvaII GGWCC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 584
BanII GRGCYC 1 cut(s) 1885
BbsI GAAGAC 3 cut(s) 127, 292, 2070
BbvI GCAGC 3 cut(s) 498, 1355, 1780
BccI CCATC 9 cut(s) 674, 733, 992, 1045, 1357, 1619, 1777, 1892, 2054
BciT130I CCWGG 1 cut(s) 505
BclI TGATCA 5 cut(s) 465, 570, 1095, 1357, 1602
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 4 cut(s) 1324, 1504, 1574, 1848
BfaI CTAG 2 cut(s) 1269, 1595
BfmI CTRYAG 2 cut(s) 446, 1743
BisI GCNGC 4 cut(s) 154, 512, 1344, 1769
BlsI GCNGC 4 cut(s) 155, 513, 1345, 1770
Bme1390I CCNGG 2 cut(s) 336, 505
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 2 cut(s) 189, 230
BmgBI CACGTC 3 cut(s) 184, 238, 298
BmgT120I GGNCC 3 cut(s) 391, 1657, 2064
BmiI GGNNCC 3 cut(s) 392, 543, 2065
BmrFI CCNGG 2 cut(s) 336, 505
BmsI GCATC 8 cut(s) 595, 961, 1143, 1435, 1540, 1877, 1960, 2008
BpiI GAAGAC 3 cut(s) 127, 292, 2070
BpmI CTGGAG 1 cut(s) 1598
Bpu10I CCTNAGC 1 cut(s) 714
Bpu14I TTCGAA 2 cut(s) 420, 1695
BpuEI CTTGAG 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 3 cut(s) 231, 504, 1653
Bsc4I CCNNNNNNNGG 5 cut(s) 387, 591, 638, 1687, 1834
Bse1I ACTGG 2 cut(s) 385, 1338
Bse3DI GCAATG 2 cut(s) 996, 1140
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 3 cut(s) 231, 504, 1653
BseLI CCNNNNNNNGG 5 cut(s) 387, 591, 638, 1687, 1834
BseMI GCAATG 2 cut(s) 996, 1140
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 2 cut(s) 385, 1338
BseRI GAGGAG 3 cut(s) 38, 77, 654
BseXI GCAGC 3 cut(s) 498, 1355, 1780
BseYI CCCAGC 1 cut(s) 598
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 2 cut(s) 36, 746
BshFI GGCC 5 cut(s) 503, 584, 649, 1658, 2066
BsiHKCI CYCGRG 2 cut(s) 189, 230
BsiSI CCGG 2 cut(s) 336, 968
BslFI GGGAC 2 cut(s) 10, 404
BslI CCNNNNNNNGG 5 cut(s) 387, 591, 638, 1687, 1834
BsmAI GTCTC 4 cut(s) 1324, 1504, 1574, 1848
BsmFI GGGAC 2 cut(s) 10, 404
BsmI GAATGC 2 cut(s) 339, 766
BsnI GGCC 5 cut(s) 503, 584, 649, 1658, 2066
BsoBI CYCGRG 2 cut(s) 189, 230
Bsp119I TTCGAA 2 cut(s) 420, 1695
Bsp1286I GDGCHC 1 cut(s) 1885
Bsp1407I TGTACA 1 cut(s) 1713
Bsp143I GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
Bsp19I CCATGG 1 cut(s) 1653
BspANI GGCC 5 cut(s) 503, 584, 649, 1658, 2066
BspCNI CTCAG 1 cut(s) 625
BspFNI CGCG 2 cut(s) 36, 746
BspLI GGNNCC 3 cut(s) 392, 543, 2065
BspMAI CTGCAG 2 cut(s) 450, 1747
BspPI GGATC 1 cut(s) 339
BspT104I TTCGAA 2 cut(s) 420, 1695
BsrDI GCAATG 2 cut(s) 996, 1140
BsrGI TGTACA 1 cut(s) 1713
BsrI ACTGG 2 cut(s) 385, 1338
BssECI CCNNGG 3 cut(s) 231, 504, 1653
BssMI GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 1653
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 6 cut(s) 250, 427, 1029, 1212, 1799, 1859
Bst6I CTCTTC 2 cut(s) 363, 839
BstACI GRCGYC 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 1713
BstBI TTCGAA 2 cut(s) 420, 1695
BstC8I GCNNGC 2 cut(s) 1747, 1885
BstDEI CTNAG 3 cut(s) 633, 714, 1984
BstDSI CCRYGG 1 cut(s) 1653
BstENI CCTNNNNNAGG 3 cut(s) 636, 1685, 1832
BstFNI CGCG 2 cut(s) 36, 746
BstHHI GCGC 1 cut(s) 36
BstKTI GATC 7 cut(s) 347, 468, 573, 1098, 1279, 1360, 1605
BstMAI GTCTC 4 cut(s) 1324, 1504, 1574, 1848
BstMBI GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
BstMWI GCNNNNNNNGC 8 cut(s) 185, 336, 1130, 1172, 1265, 1746, 1751, 1760
BstNI CCWGG 1 cut(s) 505
BstSCI CCNGG 2 cut(s) 334, 503
BstSFI CTRYAG 2 cut(s) 446, 1743
BstUI CGCG 2 cut(s) 36, 746
BstV1I GCAGC 3 cut(s) 498, 1355, 1780
BstV2I GAAGAC 3 cut(s) 127, 292, 2070
BsuRI GGCC 5 cut(s) 503, 584, 649, 1658, 2066
BtgI CCRYGG 1 cut(s) 1653
BtrI CACGTC 3 cut(s) 184, 238, 298
BtsI GCAGTG 2 cut(s) 223, 2055
BtsIMutI CAGTG 5 cut(s) 223, 242, 392, 1034, 2055
Cac8I GCNNGC 2 cut(s) 1747, 1885
CaiI CAGNNNCTG 1 cut(s) 1973
CfoI GCGC 1 cut(s) 36
Cfr13I GGNCC 3 cut(s) 391, 1657, 2064
CseI GACGC 2 cut(s) 25, 752
Csp6I GTAC 3 cut(s) 454, 1714, 1981
CviAII CATG 9 cut(s) 658, 893, 1157, 1205, 1394, 1654, 1730, 1953, 2003
CviQI GTAC 3 cut(s) 454, 1714, 1981
DdeI CTNAG 3 cut(s) 633, 714, 1984
DpnI GATC 7 cut(s) 346, 467, 572, 1097, 1278, 1359, 1604
DpnII GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
DraI TTTAAA 2 cut(s) 1251, 1893
EaeI YGGCCR 1 cut(s) 582
Eam1104I CTCTTC 2 cut(s) 363, 839
EarI CTCTTC 2 cut(s) 363, 839
EciI GGCGGA 3 cut(s) 85, 140, 1274
Eco130I CCWWGG 1 cut(s) 1653
Eco147I AGGCCT 1 cut(s) 649
Eco24I GRGCYC 1 cut(s) 1885
Eco47I GGWCC 1 cut(s) 391
Eco57I CTGAAG 1 cut(s) 1776
Eco88I CYCGRG 2 cut(s) 189, 230
EcoNI CCTNNNNNAGG 3 cut(s) 636, 1685, 1832
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 1 cut(s) 1653
EcoT22I ATGCAT 3 cut(s) 610, 1158, 1555
EcoT38I GRGCYC 1 cut(s) 1885
ErhI CCWWGG 1 cut(s) 1653
FaeI CATG 9 cut(s) 661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
FaqI GGGAC 2 cut(s) 10, 404
FatI CATG 9 cut(s) 657, 892, 1156, 1204, 1393, 1653, 1729, 1952, 2002
FauI CCCGC 2 cut(s) 797, 901
FauNDI CATATG 1 cut(s) 1555
FbaI TGATCA 5 cut(s) 465, 570, 1095, 1357, 1602
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 154, 512, 1344, 1769
FriOI GRGCYC 1 cut(s) 1885
Fsp4HI GCNGC 4 cut(s) 154, 512, 1344, 1769
FspBI CTAG 2 cut(s) 1269, 1595
GlaI GCGC 1 cut(s) 35
GluI GCNGC 4 cut(s) 154, 512, 1344, 1769
GsaI CCCAGC 1 cut(s) 602
GsuI CTGGAG 1 cut(s) 1598
HaeIII GGCC 5 cut(s) 503, 584, 649, 1658, 2066
HapII CCGG 2 cut(s) 336, 968
HgaI GACGC 2 cut(s) 25, 752
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 9 cut(s) 661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 2 cut(s) 7, 2056
HindII GTYRAC 2 cut(s) 7, 2056
HindIII AAGCTT 1 cut(s) 1992
HpaII CCGG 2 cut(s) 336, 968
HphI GGTGA 4 cut(s) 710, 748, 827, 1060
Hpy166II GTNNAC 5 cut(s) 7, 873, 1473, 1590, 2056
Hpy188III TCNNGA 3 cut(s) 13, 469, 1280
Hpy8I GTNNAC 5 cut(s) 7, 873, 1473, 1590, 2056
Hpy99I CGWCG 4 cut(s) 134, 188, 200, 626
HpyAV CCTTC 9 cut(s) 379, 493, 526, 949, 1051, 1114, 1156, 1319, 1751
HpyCH4III ACNGT 6 cut(s) 250, 427, 1029, 1212, 1799, 1859
HpyCH4IV ACGT 6 cut(s) 132, 183, 237, 297, 452, 2027
HpyF10VI GCNNNNNNNGC 8 cut(s) 185, 336, 1130, 1172, 1265, 1746, 1751, 1760
HpyF3I CTNAG 3 cut(s) 633, 714, 1984
HpySE526I ACGT 6 cut(s) 132, 183, 237, 297, 452, 2027
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 9 cut(s) 661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
HspAI GCGC 1 cut(s) 34
Ksp22I TGATCA 5 cut(s) 465, 570, 1095, 1357, 1602
Kzo9I GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
LmnI GCTCC 3 cut(s) 51, 541, 718
Lsp1109I GCAGC 3 cut(s) 498, 1355, 1780
LweI GCATC 8 cut(s) 595, 961, 1143, 1435, 1540, 1877, 1960, 2008
MaeI CTAG 2 cut(s) 1269, 1595
MaeII ACGT 6 cut(s) 132, 183, 237, 297, 452, 2027
MaeIII GTNAC 4 cut(s) 557, 1223, 1705, 1813
MalI GATC 7 cut(s) 346, 467, 572, 1097, 1278, 1359, 1604
MboI GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
MhlI GDGCHC 1 cut(s) 1885
MlsI TGGCCA 1 cut(s) 584
MluNI TGGCCA 1 cut(s) 584
MlyI GAGTC 4 cut(s) 86, 386, 651, 2011
MmeI TCCRAC 2 cut(s) 405, 2039
Mox20I TGGCCA 1 cut(s) 584
Mph1103I ATGCAT 3 cut(s) 610, 1158, 1555
MscI TGGCCA 1 cut(s) 584
MseI TTAA 7 cut(s) 1199, 1250, 1308, 1368, 1619, 1892, 2089
MslI CAYNNNNRTG 1 cut(s) 1829
Msp20I TGGCCA 1 cut(s) 584
MspI CCGG 2 cut(s) 336, 968
MspR9I CCNGG 2 cut(s) 336, 505
Mva1269I GAATGC 2 cut(s) 339, 766
MvaI CCWGG 1 cut(s) 505
MvnI CGCG 2 cut(s) 36, 746
MwoI GCNNNNNNNGC 8 cut(s) 185, 336, 1130, 1172, 1265, 1746, 1751, 1760
NciI CCSGG 1 cut(s) 336
NcoI CCATGG 1 cut(s) 1653
NdeI CATATG 1 cut(s) 1555
NdeII GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
NlaIII CATG 9 cut(s) 661, 896, 1160, 1208, 1397, 1657, 1733, 1956, 2006
NlaIV GGNNCC 3 cut(s) 392, 543, 2065
NmeAIII GCCGAG 2 cut(s) 424, 1034
NmuCI GTSAC 1 cut(s) 1813
NsiI ATGCAT 3 cut(s) 610, 1158, 1555
NspV TTCGAA 2 cut(s) 420, 1695
PceI AGGCCT 1 cut(s) 649
PcsI WCGNNNNNNNCGW 3 cut(s) 87, 180, 192
PctI GAATGC 2 cut(s) 339, 766
PfeI GAWTC 6 cut(s) 889, 1178, 1350, 1672, 1692, 1726
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 4 cut(s) 155, 513, 1345, 1770
PleI GAGTC 4 cut(s) 86, 385, 650, 2011
PpsI GAGTC 4 cut(s) 86, 385, 650, 2011
PshBI ATTAAT 2 cut(s) 1199, 1308
PsiI TTATAA 4 cut(s) 666, 774, 939, 1086
Psp6I CCWGG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 598
PspGI CCWGG 1 cut(s) 503
PspN4I GGNNCC 3 cut(s) 392, 543, 2065
PspPI GGNCC 3 cut(s) 391, 1657, 2064
PstI CTGCAG 2 cut(s) 450, 1747
PstNI CAGNNNCTG 1 cut(s) 1973
RsaI GTAC 3 cut(s) 455, 1715, 1982
RsaNI GTAC 3 cut(s) 454, 1714, 1981
RseI CAYNNNNRTG 1 cut(s) 1829
SalI GTCGAC 1 cut(s) 5
SaqAI TTAA 7 cut(s) 1199, 1250, 1308, 1368, 1619, 1892, 2089
SatI GCNGC 4 cut(s) 154, 512, 1344, 1769
Sau3AI GATC 7 cut(s) 344, 465, 570, 1095, 1276, 1357, 1602
Sau96I GGNCC 3 cut(s) 391, 1657, 2064
SchI GAGTC 4 cut(s) 86, 386, 651, 2011
ScrFI CCNGG 2 cut(s) 336, 505
SduI GDGCHC 1 cut(s) 1885
SfaNI GCATC 8 cut(s) 595, 961, 1143, 1435, 1540, 1877, 1960, 2008
SfcI CTRYAG 2 cut(s) 446, 1743
SfuI TTCGAA 2 cut(s) 420, 1695
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 1829
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SseBI AGGCCT 1 cut(s) 649
SspI AATATT 2 cut(s) 670, 1930
SspMI CTAG 2 cut(s) 1269, 1595
StuI AGGCCT 1 cut(s) 649
StyD4I CCNGG 2 cut(s) 334, 503
StyI CCWWGG 1 cut(s) 1653
TaaI ACNGT 6 cut(s) 250, 427, 1029, 1212, 1799, 1859
TaiI ACGT 6 cut(s) 135, 186, 240, 300, 455, 2030
TaqI TCGA 8 cut(s) 6, 90, 198, 343, 420, 621, 996, 1695
TaqII GACCGA 1 cut(s) 408
TatI WGTACW 1 cut(s) 1713
TauI GCSGC 1 cut(s) 156
TfiI GAWTC 6 cut(s) 889, 1178, 1350, 1672, 1692, 1726
Tru1I TTAA 7 cut(s) 1199, 1250, 1308, 1368, 1619, 1892, 2089
Tru9I TTAA 7 cut(s) 1199, 1250, 1308, 1368, 1619, 1892, 2089
TscAI CASTG 5 cut(s) 230, 249, 392, 1034, 2055
TseFI GTSAC 1 cut(s) 1813
TseI GCWGC 3 cut(s) 511, 1343, 1768
Tsp45I GTSAC 1 cut(s) 1813
TspDTI ATGAA 9 cut(s) 361, 857, 867, 881, 1193, 1353, 1395, 1718, 1941
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 5 cut(s) 230, 249, 392, 1034, 2055
Van91I CCANNNNNTGG 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 391
VspI ATTAAT 2 cut(s) 1199, 1308
XagI CCTNNNNNAGG 3 cut(s) 636, 1685, 1832
XapI RAATTY 1 cut(s) 1875
XcmI CCANNNNNNNNNTGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 2 cut(s) 1269, 1595
ZraI GACGTC 1 cut(s) 133
Zsp2I ATGCAT 3 cut(s) 610, 1158, 1555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.