Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013532

Physical Location & Seq

Genomic Coordinates Reverse (-)

7199685 .. 7201860

Gene Structure 2176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2100 bp

ATGGTCGACTTCCCCAAATCCCTCTCCCCCAAACGCGTCCTCAAACTCCTCCAAGCCGAGAAGAACACCCACTCCGCCCTCGCCCTCCTCGACTCCGCCACCCGCCACCCCAACTACTCCCACTCCCCGGACGTCTTCCACCACATTCTCCGCCGCCTCTTCCACCCCAACCTCGTCTCCCACGTCACCCGGGTCCTCCAGCTCATCCGGACCCAGAAATGCCAATGCCCCGAGGACGTGGCACTCACTGTGATCAAAGCCTATACCAAAAACTCAATGCCGGATAAAGCTCTGGAAATCTTTCATCAAATGCGCGAGATTTTCGGGTGCGAGCCCGGTATCCGGTCCTACAATGCTTTGCTGAATGCCTTCATAGAGTCGAATCAGTGGGACCGGGCCGAGCAGTTGTTTGCCTATTTCGAAACGGTGGGGTTGGTCCCCAATTTGCAGACTTACAACACTTTGATTAAGATTTCGTGCAAGAAGAGGCAGTTTGAGAAGGCGAGACGGTTGCTGGATTGGATGTGGGAGAAGGGTTTGAAGCCTGATGTGATGAGTTACGGAGTTTTGATCAATGCGCTTGCGAAAAATGGGAAGATGGGGGATGCATTGGAGGTGTTCGACGAAATGCCTGAGAGAGGAGTGAGTCCTGATGTCATGTGTTATAATATTTTGATTGATGGGTGGTTTCGGAGAGGGGATTACGCGGAGGCGAAGGAGGTTTGGGAGAGGTTGGTGATGGACTCGGGGGCGTATCCAAATGTTGTTAGTTATAATGTGATGATTAGTGGGTTGTGCAAGTGCGGGAGGTTTGGTGAGAGTTTGGAGATATGGGATAGGATGAAGAGGAATGAAAGAGGGTGTGATTTGTTCACTTGTAGTTCTTTGATCAACGGGTTGTGTAAAGCGGGGAATGTGGATGAGGCGGAGATAGTTTATAAGGATATGGTTGGGAAGGGAGTGATGCCGGATGTGGTTGTGTATAATGCAATGCTCAATGGATTCTGCCGAGATGGGAAGATTGGTGAGTGTTTTGAGTTGTGGGAGGTGATGGAGAAGGGTGGTTGTCGTAATGTTGTGAGTTATAACATATTGATCAGAGGGTTGTTTGAGAATGGGAAGGTGGAGGAAGCAATGTCTGTCTGGGAATTGATGCATGAGAAGGCTTGCGTTGCGGATTCCACAACGTATGGAGTATTAATTCATGGACTGTGTAAGAATGGTTACTTGAACAAGGCTCTGTTGATTTTAAAAGAGGCAGAAAATGCAGGAGCTGATCTCGATATCTTTGCATATTCCTCATTGATTAATTGGTTATGCAAAGAAGGGAGACTAGATGAAGCAGCCAGGCTACTTGATCAGATGGCCAAGTGTGGCTATAAACCAAATCTTCATGTCTGCAATTCGTTGATATATGGCTTTATCCAAGTTTCCAAACTTGAAGATGCAATTTGTTTTTTCAAGGCAATGTCCACCAAGTACTGCTCTCCAAATGTTGTCTCCTATAATACTCTGATAAATGGCTTGTGCAAAGTCAGAAGATATAGCGATGCATATGTGTTTGTGAAGGAAATGCTGGAGAAAGGCTTGAAGCTAGACGTGATCACATATAGTCTGTTGATTGATGGCCTTTGTCAAGGCAGGAAGATTGACATGGCCCTCAATTTGTGGAATCAAGCCCTTGACAAGGGATTTGAGCCTGATGTAACTATGTACAACATTATGATTCATGGACTTTGCTCTGCAGGCAAAGCTGAAGGTGCTTTGCAGCTATATTTTCAGATGGGGTGTCGGAATTGTGATCCGAATCTTGTGACGCACAACACCCTAATGGAAGGTTTTTACAAAATTAGAGACTGTGGAAAGGCATCTCAAATTTGGGCTCGCATTTTAAAGGTTGGGCTACGACCAGATATAATTTCCTATAATATCACTCTCAAAGGGCTTTGTTCAAGCAGTAGAATATCAGATGCTGTTGGGTACTTGGAAAAAGCTTTGCATCATGGAGTTCTTCCAACTCATATAACGTGGCACATACTTGTTAGAGCAGTGGTCAACGATAGGGCCACTTCACAGTCTTCTTGGGAAGTTGCAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

700

Amino Acids

79.02

Weight (kDa)

7.86

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	110 - 158	5.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	112 - 161	1.9e-09	PPR repeat family
TPR_24	PF23276	116 - 209	7.3e-06	Fungal tetratrico peptide repeats
PPR_long	PF17177	132 - 235	7.9e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	144 - 175	3.7e-06	PPR repeat
PPR_2	PF13041	147 - 196	7.2e-14	PPR repeat family
PPR_3	PF13812	170 - 226	1.3e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	178 - 210	4.5e-10	PPR repeat
PPR_2	PF13041	182 - 228	2.6e-15	PPR repeat family
PPR	PF01535	186 - 215	3.9e-08	PPR repeat
PPR_1	PF12854	213 - 244	1.3e-07	PPR repeat
PPR_3	PF13812	213 - 263	4.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	250 - 282	2.8e-09	PPR repeat
PPR_2	PF13041	253 - 302	1e-14	PPR repeat family
PPR	PF01535	256 - 284	1.6e-08	PPR repeat
PPR_3	PF13812	277 - 334	6.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	289 - 326	2.4e-08	PPR repeat family
PPR_1	PF12854	289 - 317	8.7e-07	PPR repeat
PPR	PF01535	291 - 321	7.2e-08	PPR repeat
PPR_1	PF12854	319 - 352	2e-10	PPR repeat
PPR_2	PF13041	323 - 356	1.8e-09	PPR repeat family
PPR	PF01535	326 - 356	2.8e-07	PPR repeat
PPR_1	PF12854	353 - 385	2.2e-08	PPR repeat
PPR_2	PF13041	357 - 406	3e-16	PPR repeat family
PPR	PF01535	360 - 388	3.7e-07	PPR repeat
PPR_1	PF12854	390 - 419	8.6e-07	PPR repeat
PPR_2	PF13041	393 - 441	4.5e-09	PPR repeat family
PPR_1	PF12854	425 - 455	1.3e-09	PPR repeat
PPR_2	PF13041	428 - 474	6e-11	PPR repeat family
PPR	PF01535	431 - 459	1.5e-06	PPR repeat
PPR_3	PF13812	450 - 507	2.6e-09	Pentatricopeptide repeat domain
PPR_2	PF13041	462 - 511	8.3e-13	PPR repeat family
PPR_1	PF12854	495 - 525	5.4e-11	PPR repeat
PPR_2	PF13041	497 - 546	7.3e-18	PPR repeat family
PPR	PF01535	500 - 530	5.6e-07	PPR repeat
PPR_1	PF12854	528 - 559	3.2e-07	PPR repeat
PPR_2	PF13041	540 - 580	1.3e-09	PPR repeat family
PPR_3	PF13812	560 - 612	2.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	563 - 595	1.5e-08	PPR repeat
PPR_2	PF13041	567 - 616	5e-14	PPR repeat family
PPR	PF01535	571 - 600	3.5e-06	PPR repeat
PPR_3	PF13812	598 - 647	9.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	605 - 650	2.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09060 AT3G09060
fragaria_vesca	FvH4_6g11981
malus_domestica	MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica	Prupe.6G271000_v2.0.a1
pyrus_communis	pycom12g15230
rosa_chinensis	RchiOBHm_Chr3g0463821
rosa_laevigata	RLG00000024754
rosa_multiflora	Rmu_sc0004796.1_g000010
rosa_roxburghii	Rroxscaffold_6G00416270
rosa_rugosa	Rorug03G0068000 Rorug03G0068100
rosa_samantha	Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana	Rw3G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	4 cut(s)	666, 774, 939, 1086
AatII	GACGTC	1 cut(s)	135
AccI	GTMKAC	1 cut(s)	6
AccII	CGCG	3 cut(s)	36, 315, 707
AccIII	TCCGGA	1 cut(s)	207
AclWI	GGATC	1 cut(s)	1796
AcoI	YGGCCR	1 cut(s)	1365
AcsI	RAATTY	1 cut(s)	1875
AcuI	CTGAAG	1 cut(s)	1776
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	3 cut(s)	1481, 1715, 1982
AfiI	CCNNNNNNNGG	4 cut(s)	127, 342, 638, 1687
AflIII	ACRYGT	1 cut(s)	34
AgsI	TTSAA	6 cut(s)	541, 1231, 1442, 1462, 1591, 1953
AjiI	CACGTC	3 cut(s)	184, 238, 1600
AjnI	CCWGG	1 cut(s)	1346
AloI	GAACNNNNNNTCC	2 cut(s)	56, 88
AluBI	AGCT	7 cut(s)	202, 290, 1274, 1594, 1754, 1771, 1994
AluI	AGCT	7 cut(s)	202, 290, 1274, 1594, 1754, 1771, 1994
Alw26I	GTCTC	5 cut(s)	181, 499, 1324, 1504, 1848
AlwI	GGATC	1 cut(s)	1796
AlwNI	CAGNNNCTG	2 cut(s)	1274, 1973
Ama87I	CYCGRG	3 cut(s)	189, 230, 745
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	5 cut(s)	396, 1365, 1627, 1656, 2064
ApeKI	GCWGC	2 cut(s)	1343, 1768
ApoI	RAATTY	1 cut(s)	1875
ArsI	GACNNNNNNTTYG	2 cut(s)	1676, 1708
AseI	ATTAAT	2 cut(s)	1199, 1308
Asp700I	GAANNNNTTC	2 cut(s)	300, 368
AspLEI	GCGC	2 cut(s)	315, 580
AspS9I	GGNCC	8 cut(s)	193, 210, 345, 391, 396, 436, 1657, 2064
AsuC2I	CCSGG	5 cut(s)	128, 190, 191, 336, 395
AsuHPI	GGTGA	5 cut(s)	178, 748, 827, 1037, 1060
AsuII	TTCGAA	1 cut(s)	420
AvaI	CYCGRG	3 cut(s)	189, 230, 745
AvaII	GGWCC	5 cut(s)	193, 210, 345, 391, 436
BalI	TGGCCA	1 cut(s)	1367
BanII	GRGCYC	2 cut(s)	336, 1885
BbsI	GAAGAC	2 cut(s)	127, 2070
BbvI	GCAGC	2 cut(s)	1355, 1780
BccI	CCATC	8 cut(s)	592, 674, 733, 1007, 1045, 1357, 1619, 1777
BcgI	CGANNNNNNTGC	4 cut(s)	493, 527, 1271, 1305
BciT130I	CCWGG	1 cut(s)	1348
BciVI	GTATCC	2 cut(s)	350, 765
BclI	TGATCA	6 cut(s)	252, 570, 888, 1095, 1357, 1602
BcnI	CCSGG	5 cut(s)	128, 190, 191, 336, 395
BcoDI	GTCTC	5 cut(s)	181, 499, 1324, 1504, 1848
BfaI	CTAG	2 cut(s)	1334, 1595
BfmI	CTRYAG	1 cut(s)	1743
BfuI	GTATCC	2 cut(s)	350, 765
BisI	GCNGC	3 cut(s)	154, 1344, 1769
BlsI	GCNGC	3 cut(s)	155, 1345, 1770
BmcAI	AGTACT	1 cut(s)	1481
Bme1390I	CCNGG	6 cut(s)	128, 190, 191, 336, 395, 1348
Bme18I	GGWCC	5 cut(s)	193, 210, 345, 391, 436
BmeT110I	CYCGRG	3 cut(s)	189, 230, 745
BmgBI	CACGTC	3 cut(s)	184, 238, 1600
BmgT120I	GGNCC	8 cut(s)	193, 210, 345, 391, 396, 436, 1657, 2064
BmiI	GGNNCC	4 cut(s)	194, 212, 392, 438
BmrFI	CCNGG	6 cut(s)	128, 190, 191, 336, 395, 1348
BmsI	GCATC	8 cut(s)	595, 954, 1143, 1435, 1540, 1877, 1960, 2008
BpiI	GAAGAC	2 cut(s)	127, 2070
BplI	GAGNNNNNCTC	2 cut(s)	1263, 1295
BpmI	CTGGAG	2 cut(s)	182, 1598
Bpu14I	TTCGAA	1 cut(s)	420
BpuMI	CCSGG	5 cut(s)	128, 190, 191, 336, 395
BsaBI	GATNNNNATC	1 cut(s)	1806
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	126, 189, 231
BsaWI	WCCGGW	2 cut(s)	207, 342
BsaXI	ACNNNNNCTCC	8 cut(s)	56, 86, 107, 137, 161, 191, 799, 829
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 342, 638, 1687
Bse3DI	GCAATG	3 cut(s)	996, 1140, 1473
Bse8I	GATNNNNATC	1 cut(s)	1806
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	1348
BseDI	CCNNGG	3 cut(s)	126, 189, 231
BseGI	GGATG	6 cut(s)	204, 528, 610, 846, 925, 976
BseJI	GATNNNNATC	1 cut(s)	1806
BseLI	CCNNNNNNNGG	4 cut(s)	127, 342, 638, 1687
BseMI	GCAATG	3 cut(s)	996, 1140, 1473
BseMII	CTCAG	1 cut(s)	624
BseRI	GAGGAG	3 cut(s)	38, 77, 654
BseXI	GCAGC	2 cut(s)	1355, 1780
Bsh1236I	CGCG	3 cut(s)	36, 315, 707
BshFI	GGCC	5 cut(s)	398, 1367, 1629, 1658, 2066
BsiHKCI	CYCGRG	3 cut(s)	189, 230, 745
BsiSI	CCGG	8 cut(s)	128, 190, 208, 281, 336, 343, 394, 968
BslFI	GGGAC	2 cut(s)	404, 422
BslI	CCNNNNNNNGG	4 cut(s)	127, 342, 638, 1687
BsmAI	GTCTC	5 cut(s)	181, 499, 1324, 1504, 1848
BsmBI	CGTCTC	2 cut(s)	181, 499
BsmFI	GGGAC	2 cut(s)	404, 422
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	5 cut(s)	398, 1367, 1629, 1658, 2066
BsoBI	CYCGRG	3 cut(s)	189, 230, 745
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	2 cut(s)	336, 1885
Bsp13I	TCCGGA	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	1713
Bsp143I	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
BspANI	GGCC	5 cut(s)	398, 1367, 1629, 1658, 2066
BspCNI	CTCAG	1 cut(s)	625
BspEI	TCCGGA	1 cut(s)	207
BspFNI	CGCG	3 cut(s)	36, 315, 707
BspLI	GGNNCC	4 cut(s)	194, 212, 392, 438
BspMAI	CTGCAG	1 cut(s)	1747
BspPI	GGATC	1 cut(s)	1796
BspT104I	TTCGAA	1 cut(s)	420
BsrDI	GCAATG	3 cut(s)	996, 1140, 1473
BsrGI	TGTACA	1 cut(s)	1713
BssECI	CCNNGG	3 cut(s)	126, 189, 231
BssMI	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	1348
Bst4CI	ACNGT	6 cut(s)	250, 427, 510, 1212, 1859, 2076
Bst6I	CTCTTC	3 cut(s)	164, 479, 839
BstACI	GRCGYC	1 cut(s)	132
BstAPI	GCANNNNNTGC	1 cut(s)	1265
BstAUI	TGTACA	1 cut(s)	1713
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	5 cut(s)	332, 582, 1168, 1747, 1885
BstDEI	CTNAG	1 cut(s)	633
BstENI	CCTNNNNNAGG	2 cut(s)	636, 1685
BstF5I	GGATG	6 cut(s)	204, 528, 610, 846, 925, 976
BstFNI	CGCG	3 cut(s)	36, 315, 707
BstHHI	GCGC	2 cut(s)	315, 580
BstKTI	GATC	8 cut(s)	255, 573, 891, 1098, 1279, 1360, 1605, 1804
BstMAI	GTCTC	5 cut(s)	181, 499, 1324, 1504, 1848
BstMBI	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
BstMWI	GCNNNNNNNGC	5 cut(s)	1172, 1265, 1746, 1751, 1760
BstNI	CCWGG	1 cut(s)	1348
BstSCI	CCNGG	6 cut(s)	126, 188, 189, 334, 393, 1346
BstSFI	CTRYAG	1 cut(s)	1743
BstUI	CGCG	3 cut(s)	36, 315, 707
BstV1I	GCAGC	2 cut(s)	1355, 1780
BstV2I	GAAGAC	2 cut(s)	127, 2070
BsuI	GTATCC	2 cut(s)	350, 765
BsuRI	GGCC	5 cut(s)	398, 1367, 1629, 1658, 2066
BtgZI	GCGATG	1 cut(s)	1563
BtrI	CACGTC	3 cut(s)	184, 238, 1600
BtsCI	GGATG	6 cut(s)	204, 528, 610, 846, 925, 976
BtsI	GCAGTG	1 cut(s)	2055
BtsIMutI	CAGTG	3 cut(s)	246, 392, 2055
Cac8I	GCNNGC	5 cut(s)	332, 582, 1168, 1747, 1885
CaiI	CAGNNNCTG	2 cut(s)	1274, 1973
CfoI	GCGC	2 cut(s)	315, 580
Cfr13I	GGNCC	8 cut(s)	193, 210, 345, 391, 396, 436, 1657, 2064
Cfr9I	CCCGGG	1 cut(s)	189
CseI	GACGC	2 cut(s)	25, 1825
Csp6I	GTAC	3 cut(s)	1480, 1714, 1981
CviAII	CATG	7 cut(s)	658, 1157, 1205, 1394, 1654, 1730, 2003
CviQI	GTAC	3 cut(s)	1480, 1714, 1981
DdeI	CTNAG	1 cut(s)	633
DpnI	GATC	8 cut(s)	254, 572, 890, 1097, 1278, 1359, 1604, 1803
DpnII	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
DraI	TTTAAA	2 cut(s)	1251, 1893
EaeI	YGGCCR	1 cut(s)	1365
Eam1104I	CTCTTC	3 cut(s)	164, 479, 839
EarI	CTCTTC	3 cut(s)	164, 479, 839
EciI	GGCGGA	4 cut(s)	64, 85, 140, 941
Eco24I	GRGCYC	2 cut(s)	336, 1885
Eco32I	GATATC	1 cut(s)	1285
Eco47I	GGWCC	5 cut(s)	193, 210, 345, 391, 436
Eco57I	CTGAAG	1 cut(s)	1776
Eco88I	CYCGRG	3 cut(s)	189, 230, 745
EcoNI	CCTNNNNNAGG	2 cut(s)	636, 1685
EcoO109I	RGGNCCY	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	1346
EcoRV	GATATC	1 cut(s)	1285
EcoT22I	ATGCAT	3 cut(s)	610, 1158, 1555
EcoT38I	GRGCYC	2 cut(s)	336, 1885
Esp3I	CGTCTC	2 cut(s)	181, 499
FaeI	CATG	7 cut(s)	661, 1160, 1208, 1397, 1657, 1733, 2006
FaqI	GGGAC	2 cut(s)	404, 422
FatI	CATG	7 cut(s)	657, 1156, 1204, 1393, 1653, 1729, 2002
FauI	CCCGC	3 cut(s)	110, 797, 901
FauNDI	CATATG	1 cut(s)	1555
FbaI	TGATCA	6 cut(s)	252, 570, 888, 1095, 1357, 1602
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	3 cut(s)	154, 1344, 1769
FokI	GGATG	6 cut(s)	191, 535, 617, 853, 932, 983
FriOI	GRGCYC	2 cut(s)	336, 1885
Fsp4HI	GCNGC	3 cut(s)	154, 1344, 1769
FspBI	CTAG	2 cut(s)	1334, 1595
GlaI	GCGC	2 cut(s)	314, 579
GluI	GCNGC	3 cut(s)	154, 1344, 1769
GsuI	CTGGAG	2 cut(s)	182, 1598
HaeIII	GGCC	5 cut(s)	398, 1367, 1629, 1658, 2066
HapII	CCGG	8 cut(s)	128, 190, 208, 281, 336, 343, 394, 968
HgaI	GACGC	2 cut(s)	25, 1825
HhaI	GCGC	2 cut(s)	315, 580
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	661, 1160, 1208, 1397, 1657, 1733, 2006
Hin6I	GCGC	2 cut(s)	313, 578
HinP1I	GCGC	2 cut(s)	313, 578
HincII	GTYRAC	2 cut(s)	7, 2056
HindII	GTYRAC	2 cut(s)	7, 2056
HindIII	AAGCTT	1 cut(s)	1992
HpaII	CCGG	8 cut(s)	128, 190, 208, 281, 336, 343, 394, 968
HphI	GGTGA	5 cut(s)	178, 748, 827, 1037, 1060
Hpy166II	GTNNAC	4 cut(s)	7, 873, 1473, 2056
Hpy188I	TCNGA	9 cut(s)	693, 1100, 1362, 1515, 1538, 1782, 1794, 1806, 1969
Hpy188III	TCNNGA	4 cut(s)	208, 293, 650, 1280
Hpy8I	GTNNAC	4 cut(s)	7, 873, 1473, 2056
Hpy99I	CGWCG	1 cut(s)	626
HpyCH4III	ACNGT	6 cut(s)	250, 427, 510, 1212, 1859, 2076
HpyCH4IV	ACGT	6 cut(s)	132, 183, 237, 1187, 1599, 2027
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1172, 1265, 1746, 1751, 1760
HpyF3I	CTNAG	1 cut(s)	633
HpySE526I	ACGT	6 cut(s)	132, 183, 237, 1187, 1599, 2027
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	661, 1160, 1208, 1397, 1657, 1733, 2006
HspAI	GCGC	2 cut(s)	313, 578
Kpn2I	TCCGGA	1 cut(s)	207
Ksp22I	TGATCA	6 cut(s)	252, 570, 888, 1095, 1357, 1602
Kzo9I	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
LmnI	GCTCC	1 cut(s)	1271
Lsp1109I	GCAGC	2 cut(s)	1355, 1780
LweI	GCATC	8 cut(s)	595, 954, 1143, 1435, 1540, 1877, 1960, 2008
MaeI	CTAG	2 cut(s)	1334, 1595
MaeII	ACGT	6 cut(s)	132, 183, 237, 1187, 1599, 2027
MaeIII	GTNAC	5 cut(s)	184, 557, 1223, 1705, 1813
MalI	GATC	8 cut(s)	254, 572, 890, 1097, 1278, 1359, 1604, 1803
MboI	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
MhlI	GDGCHC	2 cut(s)	336, 1885
MlsI	TGGCCA	1 cut(s)	1367
MluI	ACGCGT	1 cut(s)	34
MluNI	TGGCCA	1 cut(s)	1367
MlyI	GAGTC	4 cut(s)	86, 386, 655, 737
MmeI	TCCRAC	2 cut(s)	1772, 2039
Mox20I	TGGCCA	1 cut(s)	1367
Mph1103I	ATGCAT	3 cut(s)	610, 1158, 1555
MroI	TCCGGA	1 cut(s)	207
MroXI	GAANNNNTTC	2 cut(s)	300, 368
MscI	TGGCCA	1 cut(s)	1367
MseI	TTAA	5 cut(s)	468, 1199, 1250, 1308, 1892
MslI	CAYNNNNRTG	1 cut(s)	1829
Msp20I	TGGCCA	1 cut(s)	1367
MspI	CCGG	8 cut(s)	128, 190, 208, 281, 336, 343, 394, 968
MspR9I	CCNGG	6 cut(s)	128, 190, 191, 336, 395, 1348
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	1348
MvnI	CGCG	3 cut(s)	36, 315, 707
MwoI	GCNNNNNNNGC	5 cut(s)	1172, 1265, 1746, 1751, 1760
NciI	CCSGG	5 cut(s)	128, 190, 191, 336, 395
NdeI	CATATG	1 cut(s)	1555
NdeII	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
NlaIII	CATG	7 cut(s)	661, 1160, 1208, 1397, 1657, 1733, 2006
NlaIV	GGNNCC	4 cut(s)	194, 212, 392, 438
NmeAIII	GCCGAG	3 cut(s)	82, 424, 1034
NmuCI	GTSAC	2 cut(s)	184, 1813
NsiI	ATGCAT	3 cut(s)	610, 1158, 1555
NspV	TTCGAA	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 180
PctI	GAATGC	1 cut(s)	370
PdmI	GAANNNNTTC	2 cut(s)	300, 368
PfeI	GAWTC	6 cut(s)	382, 1002, 1178, 1672, 1726, 1807
PkrI	GCNGC	3 cut(s)	155, 1345, 1770
PleI	GAGTC	4 cut(s)	86, 385, 654, 737
PpsI	GAGTC	4 cut(s)	86, 385, 654, 737
PpuMI	RGGWCCY	1 cut(s)	193
PshBI	ATTAAT	2 cut(s)	1199, 1308
PsiI	TTATAA	4 cut(s)	666, 774, 939, 1086
Psp5II	RGGWCCY	1 cut(s)	193
Psp6I	CCWGG	1 cut(s)	1346
PspGI	CCWGG	1 cut(s)	1346
PspN4I	GGNNCC	4 cut(s)	194, 212, 392, 438
PspPI	GGNCC	8 cut(s)	193, 210, 345, 391, 396, 436, 1657, 2064
PspPPI	RGGWCCY	1 cut(s)	193
PstI	CTGCAG	1 cut(s)	1747
PstNI	CAGNNNCTG	2 cut(s)	1274, 1973
RsaI	GTAC	3 cut(s)	1481, 1715, 1982
RsaNI	GTAC	3 cut(s)	1480, 1714, 1981
RseI	CAYNNNNRTG	1 cut(s)	1829
SalI	GTCGAC	1 cut(s)	5
SaqAI	TTAA	5 cut(s)	468, 1199, 1250, 1308, 1892
SatI	GCNGC	3 cut(s)	154, 1344, 1769
Sau3AI	GATC	8 cut(s)	252, 570, 888, 1095, 1276, 1357, 1602, 1801
Sau96I	GGNCC	8 cut(s)	193, 210, 345, 391, 396, 436, 1657, 2064
ScaI	AGTACT	1 cut(s)	1481
SchI	GAGTC	4 cut(s)	86, 386, 655, 737
ScrFI	CCNGG	6 cut(s)	128, 190, 191, 336, 395, 1348
SduI	GDGCHC	2 cut(s)	336, 1885
SfaNI	GCATC	8 cut(s)	595, 954, 1143, 1435, 1540, 1877, 1960, 2008
SfcI	CTRYAG	1 cut(s)	1743
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	5 cut(s)	193, 210, 345, 391, 436
SmaI	CCCGGG	1 cut(s)	191
SmiMI	CAYNNNNRTG	1 cut(s)	1829
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	1334, 1595
StyD4I	CCNGG	6 cut(s)	126, 188, 189, 334, 393, 1346
TaaI	ACNGT	6 cut(s)	250, 427, 510, 1212, 1859, 2076
TaiI	ACGT	6 cut(s)	135, 186, 240, 1190, 1602, 2030
TaqI	TCGA	6 cut(s)	6, 90, 380, 420, 621, 1281
TatI	WGTACW	2 cut(s)	1479, 1713
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	6 cut(s)	382, 1002, 1178, 1672, 1726, 1807
Tru1I	TTAA	5 cut(s)	468, 1199, 1250, 1308, 1892
Tru9I	TTAA	5 cut(s)	468, 1199, 1250, 1308, 1892
TscAI	CASTG	3 cut(s)	253, 392, 2055
TseFI	GTSAC	2 cut(s)	184, 1813
TseI	GCWGC	2 cut(s)	1343, 1768
Tsp45I	GTSAC	2 cut(s)	184, 1813
TspDTI	ATGAA	8 cut(s)	293, 361, 857, 867, 1193, 1353, 1382, 1718
TspGWI	ACGGA	1 cut(s)	576
TspMI	CCCGGG	1 cut(s)	189
TspRI	CASTG	3 cut(s)	253, 392, 2055
VpaK11BI	GGWCC	5 cut(s)	193, 210, 345, 391, 436
VspI	ATTAAT	2 cut(s)	1199, 1308
XagI	CCTNNNNNAGG	2 cut(s)	636, 1685
XapI	RAATTY	1 cut(s)	1875
XmaI	CCCGGG	1 cut(s)	189
XmiI	GTMKAC	1 cut(s)	6
XmnI	GAANNNNTTC	2 cut(s)	300, 368
XspI	CTAG	2 cut(s)	1334, 1595
ZraI	GACGTC	1 cut(s)	133
ZrmI	AGTACT	1 cut(s)	1481
Zsp2I	ATGCAT	3 cut(s)	610, 1158, 1555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.