Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0013532

Physical Location & Seq

Genomic Coordinates Reverse (-)

5220174 .. 5221890

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGCAGACCTCCATAAAATTCCGTTTGAACTATTGGTGCAAATCCTATCCAGGCTGCCTCCTAAATCTCTAATGCGATTCAAGTGCATCCGTAAGTCATTCGATGCTCTGGTCAATAATCCCCAGTTCGCAGTGAAGCACCTCCACTATTACAATGAACAGTCCTCCTCTACTTGCATTCTTTTCAGGCGTACTGCCGAGCACAAGACCGAAAATGACAAGCAGCAAATTTACTTTTCATTCCTTCAACTTCGCTATGACAATGACGTTGATGATGGTGATGATCATAGCCTTCATTTCAGTTTGGAGGATATCCATTTTCCACTTTCTATGGGGTTAAAGGTTAGGGGGGCCTTTATTGAGCTCCCTGATATTAGTGGTACAGGTCTTCGTGATGAATCTGTTACTATTTTAGCTCATTGTGATGGAATTTTTTGTTTTTCTCTTTACGGTGGCAACCTTGTTCTATACAATCCAGGAATCAACGAATTCAAGATCATTCCCGAGTCATGCCTTCGAGATGGTATCGGATTCTTTGTAGGATTTGGCTTTGATCCAAAATCTAAAGATTACTTACTTGTTAGGATTGTATCTTTCAAAGACCTATATGATGGCGAGTATGAAGAGCATCTCGTTATTCAACCTCCTAAGGCAGAAGTGTACACATTGAGTGCTAATTCTTGGAGAGAGGTCAATGCTGATAATTTACATACAGAAACCAGAAACATATTTGGCTTGGATTGTCAGACATGCTTCAAAGGTATTTTCTATTGGAAGGGATATGACGAACCGAGAGAATACATGTCATCTTATGACAGAGATGTGGAGGATCTAAAGTATCTGGTTATTTTATTTGATGCGTGTGACCGAGTATTTCATAGTGTAAAACTGCCGGAGTGTTTCTACCAGTTTCCACTTCATGAATTTATCCTTACCGTGTGGAATAATTCCGTTGTTCTTTATGGTTTTTATCGCGGTGGAGATCAACCTTTTGAAATTTGGGGGATGGATAACTTTGCTACTACTGGTGTCAACTGTTCTTGGACAAAACACATTTCCATTGTGCCCACATTGAAGGCTGAGATCCGGGTTCCACTTATATTGGGACTTTGGAAGAGCGATGAGGTTCTTCTGCTTGCCAAAAATGGATGCCTAGTCTCCTACAATTTCGTTACCGATAAACTTAAACATCTACCCATTCATTATTTGTCTCATGGAAATTATAACCAAGTGGTCTGTAAACGTAGTATAGTTTCGGTTAATGGTGGAAATAAGTTTGAAAGCAAAGATGTAATTTCTAACCGTGTCTCTTGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

439

Amino Acids

50.59

Weight (kDa)

5.89

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	132 - 389	3.8e-17	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013532)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09060 AT3G09060
fragaria_vesca	FvH4_6g11981
malus_domestica	MD04G1147200.v1.1 MD12G1160500.v1.1
prunus_persica	Prupe.6G271000_v2.0.a1
pyrus_communis	pycom12g15230
rosa_chinensis	RchiOBHm_Chr3g0463821
rosa_laevigata	RLG00000024754
rosa_multiflora	Rmu_sc0004796.1_g000010
rosa_roxburghii	Rroxscaffold_6G00416270
rosa_rugosa	Rorug03G0068000 Rorug03G0068100
rosa_samantha	Rh3AG125000 Rh3BG129300 Rh3CG131900 Rh3DG130400
rosa_wichuraiana	Rw3G010560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1224
AccII	CGCG	1 cut(s)	975
AciI	CCGC	1 cut(s)	975
AclWI	GGATC	3 cut(s)	548, 837, 1078
AcsI	RAATTY	6 cut(s)	18, 228, 429, 488, 923, 996
AfaI	GTAC	3 cut(s)	193, 382, 662
AflIII	ACRYGT	1 cut(s)	801
AjnI	CCWGG	2 cut(s)	50, 475
AluBI	AGCT	2 cut(s)	364, 416
AluI	AGCT	2 cut(s)	364, 416
Alw21I	GWGCWC	2 cut(s)	204, 366
Alw26I	GTCTC	3 cut(s)	1162, 1215, 1312
AlwI	GGATC	3 cut(s)	548, 837, 1078
Ama87I	CYCGRG	1 cut(s)	503
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	55, 223
ApoI	RAATTY	6 cut(s)	18, 228, 429, 488, 923, 996
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	1088
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	503
AxyI	CCTNAGG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	1068
BanII	GRGCYC	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	204, 366
BbvI	GCAGC	2 cut(s)	42, 235
BccI	CCATC	5 cut(s)	269, 419, 515, 605, 1000
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BciT130I	CCWGG	2 cut(s)	52, 477
BclI	TGATCA	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	1088
BcoDI	GTCTC	3 cut(s)	1162, 1215, 1312
BfaI	CTAG	1 cut(s)	1154
BisI	GCNGC	2 cut(s)	56, 224
BlsI	GCNGC	2 cut(s)	57, 225
Bme1390I	CCNGG	3 cut(s)	52, 477, 1088
BmeT110I	CYCGRG	1 cut(s)	503
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	2 cut(s)	352, 1092
BmrFI	CCNGG	3 cut(s)	52, 477, 1088
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	5 cut(s)	94, 96, 637, 847, 1139
BmuI	ACTGGG	1 cut(s)	118
BpiI	GAAGAC	1 cut(s)	380
BpuMI	CCSGG	1 cut(s)	1088
Bse1I	ACTGG	3 cut(s)	124, 907, 1030
Bse21I	CCTNAGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	52, 477
BseGI	GGATG	3 cut(s)	87, 1011, 1154
BseMII	CTCAG	1 cut(s)	1071
BseNI	ACTGG	3 cut(s)	124, 907, 1030
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	1068
BseXI	GCAGC	2 cut(s)	42, 235
Bsh1236I	CGCG	1 cut(s)	975
BshFI	GGCC	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	204, 366
BsiHKCI	CYCGRG	1 cut(s)	503
BsiSI	CCGG	2 cut(s)	893, 1087
BslFI	GGGAC	1 cut(s)	1119
BsmAI	GTCTC	3 cut(s)	1162, 1215, 1312
BsmFI	GGGAC	1 cut(s)	1119
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	503
Bsp1286I	GDGCHC	3 cut(s)	204, 366, 1068
Bsp1407I	TGTACA	1 cut(s)	660
Bsp143I	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
BspACI	CCGC	1 cut(s)	975
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	1072
BspFNI	CGCG	1 cut(s)	975
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	2 cut(s)	352, 1092
BspPI	GGATC	3 cut(s)	548, 837, 1078
BspQI	GCTCTTC	2 cut(s)	618, 1109
BsrGI	TGTACA	1 cut(s)	660
BsrI	ACTGG	3 cut(s)	124, 907, 1030
BssMI	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
Bst2UI	CCWGG	2 cut(s)	52, 477
Bst4CI	ACNGT	5 cut(s)	162, 452, 937, 1037, 1304
Bst6I	CTCTTC	2 cut(s)	618, 1109
BstAUI	TGTACA	1 cut(s)	660
BstC8I	GCNNGC	1 cut(s)	1137
BstDEI	CTNAG	2 cut(s)	648, 1080
BstF5I	GGATG	3 cut(s)	87, 1011, 1154
BstFNI	CGCG	1 cut(s)	975
BstKTI	GATC	6 cut(s)	286, 498, 556, 832, 985, 1086
BstMAI	GTCTC	3 cut(s)	1162, 1215, 1312
BstMBI	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
BstNI	CCWGG	2 cut(s)	52, 477
BstNSI	RCATGY	2 cut(s)	753, 805
BstSCI	CCNGG	3 cut(s)	50, 475, 1086
BstSLI	GKGCMC	1 cut(s)	1068
BstUI	CGCG	1 cut(s)	975
BstV1I	GCAGC	2 cut(s)	42, 235
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	2 cut(s)	829, 1083
BstYI	RGATCY	2 cut(s)	829, 1083
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	1134
BtsCI	GGATG	3 cut(s)	87, 1011, 1154
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	1137
CciI	TCATGA	1 cut(s)	919
Cfr13I	GGNCC	1 cut(s)	351
Csp6I	GTAC	3 cut(s)	192, 381, 661
CspCI	CAANNNNNGTGG	2 cut(s)	1083, 1118
CviAII	CATG	5 cut(s)	510, 750, 802, 920, 1214
CviJI	RGCY	8 cut(s)	55, 291, 353, 364, 416, 549, 735, 1079
CviKI_1	RGCY	8 cut(s)	55, 291, 353, 364, 416, 549, 735, 1079
CviQI	GTAC	3 cut(s)	192, 381, 661
DdeI	CTNAG	2 cut(s)	648, 1080
DpnI	GATC	6 cut(s)	285, 497, 555, 831, 984, 1085
DpnII	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
Eam1104I	CTCTTC	2 cut(s)	618, 1109
EarI	CTCTTC	2 cut(s)	618, 1109
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco32I	GATATC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	364
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	503
EcoICRI	GAGCTC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	351
EcoRI	GAATTC	1 cut(s)	488
EcoRII	CCWGG	2 cut(s)	50, 475
EcoRV	GATATC	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	366
FaeI	CATG	5 cut(s)	513, 753, 805, 923, 1217
FaqI	GGGAC	1 cut(s)	1119
FatI	CATG	5 cut(s)	509, 749, 801, 919, 1213
FbaI	TGATCA	1 cut(s)	283
Fnu4HI	GCNGC	2 cut(s)	56, 224
FokI	GGATG	3 cut(s)	74, 1018, 1161
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	2 cut(s)	56, 224
FspBI	CTAG	1 cut(s)	1154
GluI	GCNGC	2 cut(s)	56, 224
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	2 cut(s)	893, 1087
Hin1II	CATG	5 cut(s)	513, 753, 805, 923, 1217
HincII	GTYRAC	1 cut(s)	1033
HindII	GTYRAC	1 cut(s)	1033
HinfI	GANTC	5 cut(s)	78, 398, 480, 506, 531
HpaII	CCGG	2 cut(s)	893, 1087
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	4 cut(s)	661, 663, 1033, 1241
Hpy188I	TCNGA	2 cut(s)	530, 747
Hpy188III	TCNNGA	5 cut(s)	392, 493, 503, 518, 920
Hpy8I	GTNNAC	4 cut(s)	661, 663, 1033, 1241
HpyAV	CCTTC	5 cut(s)	254, 302, 524, 769, 1069
HpyCH4III	ACNGT	5 cut(s)	162, 452, 937, 1037, 1304
HpyCH4IV	ACGT	2 cut(s)	267, 1243
HpyCH4V	TGCA	3 cut(s)	40, 87, 177
HpyF3I	CTNAG	2 cut(s)	648, 1080
HpySE526I	ACGT	2 cut(s)	267, 1243
Hsp92II	CATG	5 cut(s)	513, 753, 805, 923, 1217
Ksp22I	TGATCA	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
LguI	GCTCTTC	2 cut(s)	618, 1109
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	2 cut(s)	42, 235
LweI	GCATC	5 cut(s)	94, 96, 637, 847, 1139
MaeI	CTAG	1 cut(s)	1154
MaeII	ACGT	2 cut(s)	267, 1243
MaeIII	GTNAC	3 cut(s)	403, 863, 1171
MalI	GATC	6 cut(s)	285, 497, 555, 831, 984, 1085
MboI	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
MboII	GAAGA	4 cut(s)	380, 635, 1121, 1126
MflI	RGATCY	2 cut(s)	829, 1083
MhlI	GDGCHC	3 cut(s)	204, 366, 1068
MlyI	GAGTC	1 cut(s)	515
MseI	TTAA	3 cut(s)	338, 1185, 1260
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	2 cut(s)	893, 1087
MspR9I	CCNGG	3 cut(s)	52, 477, 1088
Mva1269I	GAATGC	1 cut(s)	177
MvaI	CCWGG	2 cut(s)	52, 477
MvnI	CGCG	1 cut(s)	975
NciI	CCSGG	1 cut(s)	1088
NdeII	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
NlaIII	CATG	5 cut(s)	513, 753, 805, 923, 1217
NlaIV	GGNNCC	2 cut(s)	352, 1092
NmeAIII	GCCGAG	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	863
NspI	RCATGY	2 cut(s)	753, 805
PagI	TCATGA	1 cut(s)	919
PciI	ACATGT	1 cut(s)	801
PciSI	GCTCTTC	2 cut(s)	618, 1109
PctI	GAATGC	1 cut(s)	177
PfeI	GAWTC	4 cut(s)	78, 398, 480, 531
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	57, 225
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PscI	ACATGT	1 cut(s)	801
PsiI	TTATAA	1 cut(s)	1224
Psp124BI	GAGCTC	1 cut(s)	366
Psp6I	CCWGG	2 cut(s)	50, 475
PspGI	CCWGG	2 cut(s)	50, 475
PspN4I	GGNNCC	2 cut(s)	352, 1092
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	2 cut(s)	829, 1083
RsaI	GTAC	3 cut(s)	193, 382, 662
RsaNI	GTAC	3 cut(s)	192, 381, 661
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	366
SapI	GCTCTTC	2 cut(s)	618, 1109
SaqAI	TTAA	3 cut(s)	338, 1185, 1260
SatI	GCNGC	2 cut(s)	56, 224
Sau3AI	GATC	6 cut(s)	283, 495, 553, 829, 982, 1083
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	3 cut(s)	52, 477, 1088
SduI	GDGCHC	3 cut(s)	204, 366, 1068
SfaNI	GCATC	5 cut(s)	94, 96, 637, 847, 1139
SmiMI	CAYNNNNRTG	1 cut(s)	423
SsiI	CCGC	1 cut(s)	975
SspMI	CTAG	1 cut(s)	1154
SstI	GAGCTC	1 cut(s)	366
StyD4I	CCNGG	3 cut(s)	50, 475, 1086
TaaI	ACNGT	5 cut(s)	162, 452, 937, 1037, 1304
TaiI	ACGT	2 cut(s)	270, 1246
TaqI	TCGA	2 cut(s)	102, 517
TaqII	GACCGA	2 cut(s)	224, 882
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	78, 398, 480, 531
Tru1I	TTAA	3 cut(s)	338, 1185, 1260
Tru9I	TTAA	3 cut(s)	338, 1185, 1260
TscAI	CASTG	1 cut(s)	138
TseFI	GTSAC	1 cut(s)	863
TseI	GCWGC	2 cut(s)	55, 223
Tsp45I	GTSAC	1 cut(s)	863
TspDTI	ATGAA	9 cut(s)	171, 228, 284, 411, 636, 866, 908, 936, 1190
TspGWI	ACGGA	3 cut(s)	12, 80, 940
TspRI	CASTG	1 cut(s)	138
XapI	RAATTY	6 cut(s)	18, 228, 429, 488, 923, 996
XceI	RCATGY	2 cut(s)	753, 805
XspI	CTAG	1 cut(s)	1154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.